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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97161_cuf1 >transcript:BL97161_cuf1-protein ID=transcript:BL97161_cuf1-protein|Name=transcript:BL97161_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=172bp
ADGWDGPTCSEPCGNASPLCGANPGWPDVSACEELYVQDNCHHFCGLCRK
VGDTWGQGTTEATTTTPQPITTTTTTPEPTTTTTTTPEPTTTTTTTPQPT
TTTTTTPEPSTASTTTPVPPEPGACYHMGYYFEDGSRWDVFEGAYRVEYY
CSNGQITATDRVPIAQPQDVSG Run BLAST on NCBI mRNA from alignment at Sc0000119:558788..562912- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97161_cuf1 ID=transcript:BL97161_cuf1|Name=transcript:BL97161_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4125bp|location=Sequence derived from alignment at Sc0000119:558788..562912- (Branchiostoma lanceolatum)
GCGGACGGTTGGGATGGTCCCACCTGCTCAGGTAAGGTTGATTCTTTACC
ATTGGCCATTGTTACCTATTTACCATGATAAGTAGTGCTACATGACGTTG
GCCCAAATATATCAGTTTCTAGACATTTTAACCTAGATCGCACAGTCATC
TGCTACTTAAAGAATTTAGGTTGGGAAATGATTGGTGCTGGTTTGGACTG
CATAGCTACTATCCTTGCAGCTGAATGTTTTTGGTATTAAATGATGAAGC
AGGATAACTGAAGAGGGGATGACTTGATTTTCATGATGTGTAAGTAACTC
GATGTTGTAAACACATTTACATTTCTAGAGCCCTGTGGCAACGCTAGCCC
CCTCTGCGGTGCCAATCCGGGCTGGCCGGACGTCTCGGCTTGTGAGGAAC
TCTACGTCCAGGACAACTGTCATCATTTCTGTGGACTCTGTAGAAAGGTA
TGATTCATGAGCAATGACCCAAGTAGAACAGTAACAAAATGTATTCAATT
TTTGTCCCATCCCTCCCGTGTTAACGCATATAATGCCACTTGTACACATT
ACTATATACAAATTTTGGCATCCACAGATGTACATGTGCAAGTATACGTA
TGTGTATCTTTGCATTTGCGTGCACCCAGATACACTTGCATGAAAATATT
CATATCATGATTTATGCTGCCGTATTGGATGTTCACCTAGTAGTGAAATT
ATCAACATTTATTTCATCTAAGGTTGGTTTCTCATAATGAAATACTTTAT
ATCAATTTTTAGGTGCCTGCATGTACATATACTTATATATATATATATAT
ATAGAATATTGTTATAGCTTGTTATATGCTGTCCTTGTCAAAATACGATT
GTGATGTCTTTGTCAGCAGGGCTAGTCCTTTGTAAAAGCAACAGGCTAGT
TGTGCGTGCTGAACAGCCAAACCAATAAATAGGAATATAATAACTTTTAT
CTTTCACAATAGGTTGGTGACACATGGGGCCAGGGTACGACTGAAGCGAC
CACTACAACCCCACAGCCCATTACAACAACAACTACAACTCCTGAGCCAA
CGACTACTACAACCACCACTCCCGAACCCACGACGACGACAACCACTACT
CCTCAGCCTACCACAACCACCACCACGACCCCTGAGCCTTCTACAGCCTC
TACCACCACCCCGGTCCCTCCAGAACCTGGTAAGTTACTGATGTTCCTGT
ATCTAGCAGTTAATGATGTGGCTACCAGAAGAAGTATTATTACATGCATG
TCTGAGCAAGCGATACCGCCAACATGCTGAATGCGCATTTTAGTACCAGT
GATACGTTGGAAGTGTTTTGGCGACGCCTCAGGGGCAAGCCTTATGAACA
TATATTTTGTGCAGATTGCAAGAATTCTAGGAATTGCCAGGAATGTGTCC
ACAGGAATTTAAGACCATAACTCAAGAATGCCTCATATTTGGTAGGTGGA
CAGACCTCGAAATGATAGGATTTTGGGCCCCCAGCAATTTTCTATGGTAC
CTCAGGGGAACTTTAGCTTTTGAAATCTCATGTTATAAACATGCTATGGT
CATGATCTTTAATGGTGGATAGCTCTTTGGTTGGAAAATATGTCCTGTAG
ATTTGAAACCCCTAGCAGCTCTTTTTGAAACTGCAGGAGCTGATTTTGTA
TAGTGTTGGTGACCTTAGCGTTGCCGCGAACTTAAAACAACCGCAAACAC
TCCATTTTCTCCAGCGCGAACTTGAATGCATTTACAGCATCTTCACTGTT
ACTGTTTCAAACACCACGCTGTGTTGAAGTTGCCCGCAATATTTATCATA
AGGATCCTTTCTTCGCCTTAAAGTACCATCTACGACAGTTTATATCCTAA
ACGTGCAATTATAACTCTTTGTTCAGGTGCATGCTATCACATGGGGTACT
ACTTCGAAGACGGCAGCCGCTGGGACGTGTTTGAGGGAGCGTACCGTGTG
GAGTACTACTGCAGCAACGGTCAGATAACAGCCACGGACAGGGTGCCCAT
AGCACAGCCACAGGACGTCTCAGGTTAGTACACAACTACTGACAGGGTGC
CCATAGCACAGCCACAGGACGTCTCAGGTTAGTACACAACTACTGACAGG
GTGCCCATAGCACAGCCACAGGACGTCTCAGGTTAGTACACAACTACTGA
CAGGGTGCCCATAGCACAGCCACAGGACGTCTCAGGTTAGTACACAACTA
CTGACAGGGTGCCCATAGCACAGCCACAGGACGTCTCAGGTTAGTACACA
ACTACTGACAGGGTGCCCATAGCACAGCCACAGGACGTCTCAGGTTAGTA
CACAACTACTGACAGGGTGCCCATAGCACAGCCACAGGACGTCTCAGGTT
AGTACACAACTACTGACAGGGTGCCCATAGCACAGCCACAGGACGTCTCA
GGTTAGTACACAACTACTGACAGGGTGCCCATAGCACAGCCACAGGACGT
CTCAGGTTAGTACACAACTACTGACAGGGTGCCCATAGCACAGCCACAGG
ACGTCTCAGGTTAGTACACAACTACTGACAGGGTGCCCATAGCACAGCCA
CAGGACGTCTCAGGTTAGTACACAACTACTGACAGGGTGCCCATAGCACA
GCCACAGGACGTCTCAGGTTAGTACACAACTACTGACAGGGTGCCCATAG
CACAGCCACAGGACGTCTCAGGTTAGTACACAACTACTGACAGGGTGCCC
ATAGCACAGCCACAGGACGTCTCAGGTTAGTACACAACTACTGACAGGGT
GCCCATAGCACAGCCACAGGACGTCTCAGGTTAGTACACAACTACTGACA
GGGTGCCCATAGCACAGCCACAGGACGTCTCAGGTTAGTACACAACTACT
GACAGGGTGCCCATAGCACAGCCACAGGACGTCTCAGGTTAGTACACAAC
TACTGACAGGGTGCCCATAGCACAGCCACAGGACGTCTCAGGTTAGTACA
CAACTACTGACAGGGTGCCCATAGCACAGCCACAGGACGTCTCAGGTTAG
TACACAACTACTGACAGGGTGCCCATAGCACAGCCACAGGACGTCTCAGG
TTAGTACACAACTACTGACAGGGTGCCCATAGCACAGCCACAGGACGTCT
CAGGTTAGTACACAACTACTGACAGGGTGCCCATAGCACAGCCACAGGAC
GTCTCAGGTTAGTACACAACTACTGACAGGGTGCCCATAGCACAGCCACA
GGACGTCTCAGGTTAGTACACAACTACTGACAGGGTGCCCATAGCACAGC
CACAGGACGTCTCAGGTTAGTACACAACTACTGACAGGGTGCCCATAGCA
CAGCCACAGGACGTCTCAGGTTAGTACACAACTACTGACAGGGTGCCCAT
AGCACAGCCACAGGACGTCTCAGGTTAGTACACAACTACTGACAGGGTGC
CCATAGCACAGCCACAGGACGTCTCAGGTTAGTACACAACTACTGACAGG
GTGCCCATAGCACAGCCACAGGACGTCTCAGGTTAGTACACAACTACTGA
CAGGGTGCCCATAGCACAGCCACAGGACGTCTCAGGTTAGTACACAACTA
CTGACAGGGTGCCCATAGCACAGCCACAGGACGTCTCAGGTTAGTACACA
ACTACTGACAGGGTGCCCATAGCACAGCCACAGGACGTCTCAGGTTAGTA
CACAACTACTGACAGGGTGCCCATAGCACAGCCACAGGACGTCTCAGGTT
AGTACACAACTACTGACAGGGTGCCCATAGCACAGCCACAGGACGTCTCA
GGTTAGTACACAACTACTGACAGGGTGCCCATAGCACAGCCACAGGACGT
CTCAGGTTAGTACACAACTACTGACAGGGTGCCCATAGCACAGCCACAGG
ACGTCTCAGGTTAGTACACAACTACTGACAGGGTGCCCATAGCACAGCCA
CAGGACGTCTCAGGTTAGTACACAACTACTGACAGGGTGCCCATAGCACA
GCCACAGGACGTCTCAGGTTAGTACACAACTACTGACAGGGTGCCCATAG
CACAGCCACAGGACGTCTCAGGTTAGTACACAACTACTGACAGGGTGCCC
ATAGCACAGCCACAGGACGTCTCAGGTTAGTACACAACTACTGACAGGGT
GCCCATAGCACAGCCACAGGACGTG Coding sequence (CDS) from alignment at Sc0000119:558788..562912- >transcript:BL97161_cuf1 ID=transcript:BL97161_cuf1|Name=transcript:BL97161_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2076bp|location=Sequence derived from alignment at Sc0000119:558788..562912- (Branchiostoma lanceolatum)
GCGGACGGTTGGGATGGTCCCACCTGCTCAGAGCCCTGTGGCAACGCTAG
CCCCCTCTGCGGTGCCAATCCGGGCTGGCCGGACGTCTCGGCTTGTGAGG
AACTCTACGTCCAGGACAACTGTCATCATTTCTGTGGACTCTGTAGAAAG
GTTGGTGACACATGGGGCCAGGGTACGACTGAAGCGACCACTACAACCCC
ACAGCCCATTACAACAACAACTACAACTCCTGAGCCAACGACTACTACAA
CCACCACTCCCGAACCCACGACGACGACAACCACTACTCCTCAGCCTACC
ACAACCACCACCACGACCCCTGAGCCTTCTACAGCCTCTACCACCACCCC
GGTCCCTCCAGAACCTGGTGCATGCTATCACATGGGGTACTACTTCGAAG
ACGGCAGCCGCTGGGACGTGTTTGAGGGAGCGTACCGTGTGGAGTACTAC
TGCAGCAACGGTCAGATAACAGCCACGGACAGGGTGCCCATAGCACAGCC
ACAGGACGTCTCAGGTTAGGCGGACGGTTGGGATGGTCCCACCTGCTCAG
AGCCCTGTGGCAACGCTAGCCCCCTCTGCGGTGCCAATCCGGGCTGGCCG
GACGTCTCGGCTTGTGAGGAACTCTACGTCCAGGACAACTGTCATCATTT
CTGTGGACTCTGTAGAAAGGTTGGTGACACATGGGGCCAGGGTACGACTG
AAGCGACCACTACAACCCCACAGCCCATTACAACAACAACTACAACTCCT
GAGCCAACGACTACTACAACCACCACTCCCGAACCCACGACGACGACAAC
CACTACTCCTCAGCCTACCACAACCACCACCACGACCCCTGAGCCTTCTA
CAGCCTCTACCACCACCCCGGTCCCTCCAGAACCTGGTGCATGCTATCAC
ATGGGGTACTACTTCGAAGACGGCAGCCGCTGGGACGTGTTTGAGGGAGC
GTACCGTGTGGAGTACTACTGCAGCAACGGTCAGATAACAGCCACGGACA
GGGTGCCCATAGCACAGCCACAGGACGTCTCAGGTTAGGCGGACGGTTGG
GATGGTCCCACCTGCTCAGAGCCCTGTGGCAACGCTAGCCCCCTCTGCGG
TGCCAATCCGGGCTGGCCGGACGTCTCGGCTTGTGAGGAACTCTACGTCC
AGGACAACTGTCATCATTTCTGTGGACTCTGTAGAAAGGTTGGTGACACA
TGGGGCCAGGGTACGACTGAAGCGACCACTACAACCCCACAGCCCATTAC
AACAACAACTACAACTCCTGAGCCAACGACTACTACAACCACCACTCCCG
AACCCACGACGACGACAACCACTACTCCTCAGCCTACCACAACCACCACC
ACGACCCCTGAGCCTTCTACAGCCTCTACCACCACCCCGGTCCCTCCAGA
ACCTGGTGCATGCTATCACATGGGGTACTACTTCGAAGACGGCAGCCGCT
GGGACGTGTTTGAGGGAGCGTACCGTGTGGAGTACTACTGCAGCAACGGT
CAGATAACAGCCACGGACAGGGTGCCCATAGCACAGCCACAGGACGTCTC
AGGTTAGGCGGACGGTTGGGATGGTCCCACCTGCTCAGAGCCCTGTGGCA
ACGCTAGCCCCCTCTGCGGTGCCAATCCGGGCTGGCCGGACGTCTCGGCT
TGTGAGGAACTCTACGTCCAGGACAACTGTCATCATTTCTGTGGACTCTG
TAGAAAGGTTGGTGACACATGGGGCCAGGGTACGACTGAAGCGACCACTA
CAACCCCACAGCCCATTACAACAACAACTACAACTCCTGAGCCAACGACT
ACTACAACCACCACTCCCGAACCCACGACGACGACAACCACTACTCCTCA
GCCTACCACAACCACCACCACGACCCCTGAGCCTTCTACAGCCTCTACCA
CCACCCCGGTCCCTCCAGAACCTGGTGCATGCTATCACATGGGGTACTAC
TTCGAAGACGGCAGCCGCTGGGACGTGTTTGAGGGAGCGTACCGTGTGGA
GTACTACTGCAGCAACGGTCAGATAACAGCCACGGACAGGGTGCCCATAG
CACAGCCACAGGACGTCTCAGGTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000119 | genome | Sc0000119:558788..562912 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97161_cuf1 |
| Biotype | protein_coding |
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