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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97154_cuf1 >transcript:BL97154_cuf1-protein ID=transcript:BL97154_cuf1-protein|Name=transcript:BL97154_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=268bp
MLRKLLTTAVVLAAFHRASAEGEPLLLVSELLGQAILQVDVTSGSTVTLP
LGPVGQPLGLDYDPLTDYVYWSNLRDNDIKRARRDGSGREIIMDTGKDAR
GLALDHAGEKVFWSVYDGKTISEAKTDGSSAMTLLTSPAIGRPYGIVLDP
RNGLMYWVDQDNGRIDRAAMDGSGQTTIITGLSMPRPIAIDYYEDRLYYV
DGLNRIFSSDLQGNDIREVLYEAGKMVNGIAVDANYVYWSSSWYDGGKIG
KLSKSDLTKTVLVDGLNY Run BLAST on NCBI mRNA from alignment at Sc0000600:50152..55715- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97154_cuf1 ID=transcript:BL97154_cuf1|Name=transcript:BL97154_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5564bp|location=Sequence derived from alignment at Sc0000600:50152..55715- (Branchiostoma lanceolatum)
GTCACCTGATAGTGATAACTGATAAAGGGTGTCGGTGCTGACGTGGACCA
ATGGGAAGAGTCCAGAATCCTGCCACATACCGGTTCGTACTGGACTCTCC
CGCACATTTCATCGGGGTCTCTCGTCTCAGACGGACCACATCTTATTTTC
CAGACGTTTTTCGAGAGAATCGGACGGTAAGTAATGTTTTAGTCACTGAC
AGGTAGATTTAGGCAATGAAATGTTTTCACAGCATGGTTTTCTTTTTTAT
ATATATGTCTAGTTTTATTATTGTAGGATACATGTCATTATGATGTTCGC
GCACGCTCTTGTATAAAAAGAACGAACGTGAGACGATTTAAGAGCATCGC
GTGATTTAAACGAAGCATGATGAAAAAGGTAACTTTGCCTTCCCTAAAGT
ATTATAAAAATGTTATCCATTTGTCAAGAATAATACAGTATAATAAGATT
ACACGCAAAATCGACACAGATCCAGTGAGTTGGCTGGAACACAGGCGCCG
TGACTGTACGATAAAACACTTTTCTTGTTAGACAGCTCAACAAGCATGCT
GCGCAAACTGCTGACCACCGCCGTAGTGCTCGCTGCTTTTCATAGAGCCA
GTGCTGAAGGTACGTACCGCCCATTTCTGTACATGGTTAGGTGTATATAA
AGTGCTGTCCTGTATTTTGCTAACGGTAGGTGCTACTGTACAGGAGTGCA
GCTTGTACAGACAAATCGTTTGTTATCTACTCCTCGTGGCAGTCGTGCAT
AGTGCACTTCATTTTGATAGTAAAGAAAACTAAACGTAGAGAAAAGGGAA
AATGTTATAAGCTCACACTTGTTGGTCGTCTTTAATATTTCTTGGGGGGC
CCAATAGGTTGTATAGTATGGAGGTTGGTCGTTCAGCCCGTTGGCAATAC
CTCTGTTGAGCTCTGCTAACAACAAACAAGTCGATTCTATTGTTGGCATC
ACCAATTGAAGACACACGTAGGGCTTCAAGGAATATCTCTACCAAGTAGA
AGTATTAGAAATGATAGGCATTAGAAAAACTGGACTATATTAGAATATTT
GATTCTTTCGGGAAGTGTGAAGATAGTTCTACTGTTTGCGCCAATCTACG
GAAAATTTATTACAGGACAGAAGATCTACATATCGATCGCGCGCGATTTA
AGATCTCAGTTATTTTCCAATCACGCTACCCTTTGACGATGCAAGCATAA
TCTATTTTTCAAGGAACGTTGCGAATACTGAAACAACAGATGAGGAATTA
AAGGAACATGCTTCATCAAAACCTAATGATATCTTTAGGCATGTTTTGGC
AGTTAGATGTACAGTTTTACAGAGCTCCAGTATATACTAGTTTCTTGGAC
TACAACTAGATACGACAATTACAAGTCAGATTTTAGACATTCAACTATCA
AAGCTAATTCAACTGATAGGAAGCCATGTTTAATTGTTGCAATTTCATCG
TAATCTTATGATTGATAAATTGCGCCACGATTTTATGCGCGGCCCCGAAG
GCTTGGTGAATGTTGAACACACGGCTGAATCCTTCATGAGGATAGAACCT
GAGCAAAAACTTTTTGAGGTACCCAAATTAACAGTTTACGTCCGTGGTTT
AAAGCGTTAGAATTAAGTCAGTTATTGTGAATGACCTTGATTCAAATGTG
GCCGTGACTCTCGTATTTATGGTACACAAAGTAACTTGTAGCTATTGACT
TCCCATACGATTCTGAATATCATTATAATACTAAAATACCCTCAGAACAT
GAATACTTGTGGGAAAATATCTGAAATGGTCAGTCCATGCGATTTTGGTG
ACCTTAAACCTATTGTAATATAGATTTTAGTATAAATAGATTTTTTATGA
TGCCTGGTATGACATACCACAGGAAAATCAACGGATCCATAAGAAACATT
TTTTTCTATATAGAACTGAACTTAATTGTCTGTGAATTGTGAATTTATGC
CAAAAAAAGTTTTTTTGGACCATTTTTGTGATCACCACCTTGACACATCA
CCTTTTGAAGTGCAAAATCCTCTTACGGTATGGCATGCCTTTTAAAATAC
CATTAAATGGACCATCATGAACATATCTATACGTTATACCTAATCAAAAT
TGGAGAAGCTTTAAATGTTGGCAATTAAACACGCAACTTTAGGGTACAAA
AATATTATTCAGGGCTGGGAGGGGGTTGGACGAAAATTTCAAAATGATTA
CACAGGGGTGCTTACAACATCGTGTTGCATCAGAAAATCAGGGCTATTGT
ACTCTTTGGTATTGACACCCCTCCTTAATGGAATGCTGGGTTTTAATTTG
TTCAAGTTTAACTAATTAGTATATATTACATCTGCTAATGGTAGCTGTGT
CGTGGCCAAGGTCATATGAAGGACAACATTGCAACATTATTTCATGAAGT
TTACAGGCGCATGAAATATTGTCCCATGTCTCTTGTAGTCTTTCTTCAGC
CTTAACTGAAAGCTTCTTCAATTTGTTTAACTATAATGATTCAAATTGTC
GGCACAATTTACTACACTTGAAGATAACAAAGAAAGGTTGAATGTATATT
ATAGTATCTGTTGTATTCTTCAACACTCTTACTTATTCCACTAATTAGGA
GAGCCATTGCTTTTGGTGTCTGAACTGCTGGGACAAGCTATTCTCCAAGT
TGACGTCACTTCCGGATCGACCGTCACACTTCCGCTCGGACCTGTGGGAC
AGCCCCTTGGACTGGACTACGACCCGCTCACCGACTACGTGTACTGGTCA
AATCTTCGGGACAACGACATCAAACGGGCTCGTCGTGATGGAAGTGGCAG
GGAGATCATCATGGATACCGGCAAAGGTAAGTTGTTAATCGTCATTTTCT
GCTTCATCATAAAGTCGGACACGGTCCTTGCAAAAAGCCATACCAATTCT
GCAATGGTACAAAACAGCATATTGGTAACATCCAAGCAAGTAGAAGGATC
CGGCTCGTTGTGGATTCGTGTAACGTAGGAAAAGGCGAATCTTAAGAAAT
ATGAATTTCAGCAAAAGGGAACTTCAAGGTAGCAGAACACAGTTTTTGGC
CTATGAGGGTTTCTATAGTTAAGGACCACAAAGTGACCCTCATTGACGTG
GATAAAATCATAGTAGGGTAACCTACAAAATCACGATAAAGGGAAAATGT
TGAAGTCGAGGGTACGATCTACAAAGTAACTGAAAACCAAAAAAAGTTAT
GGTTTTCTAACAATTTGACGGCCACTTTGATATGGGGTCATGCGGGGTCA
TACGGAACTGCAGCCGACTCACCTCGGCAGGCAGCTGCAAAGGTCACGCG
CATGTATACGCCGAATGGGAAAACTTCAGAATCTCATTCCTACGATCTAA
AAGCCCACTTATTATACTGCCATACGGTAAAGTTCGTGCCTCTCTGGCAT
TCACGTCAACGTTTTTACACACGGTTCAAGGTTTAGGGCGCACTATTTTC
TTACCGCTACGTCACCGGGGGTCGCGGCGAAATACTGTTTGCTGCTACCT
AATGTTGTAAAAACAGAATATAACAAAGGAACTGATCCTGATTTGACATG
ATCTGTTTCCCTGATGTACGGTAATGTCAGCACACGCTGTTTCCTGTAGA
TGCCAGGGGCCTTGCATTGGACCACGCTGGTGAGAAGGTATTTTGGTCTG
TCTATGACGGAAAGACTATCTCTGAAGCAAAGACGGATGGCTCGTCCGCC
ATGACACTTCTGACGTCACCAGCCATCGGGCGTCCTTACGGCATTGTCCT
GGACCCCAGGAATGGGTGGGCGAAACGCATTTCATTACAAACAGGCCTTT
TGACTATACATATTCATCTCTCTCTCTCTATAATGCATCATTAGTAAAAA
AATGCATTCCTGTATCATACAGAAGTTGGGTAAAGGTGCACAGCATACAG
GATTCATTATGTGAAGCTGAATGTCAAATGTTCTGTCAAATGAAAAACCT
TTACGGTTACCTCTGTTGCCACATATACATTTATCATTATTTATATCACC
ATTGATGTAGATAATGATTCTTAACCCCCAGCATGCAAAGTGTGTGGATA
TCCACCCCTGTGGAGTCTAGACTTTACTACGAGGAGGCATTAAAACTAGA
TAAGTTAAAAAACAAGATTCACATTTTCAAAATAGACATCATAAATGTTG
TAACTAGAGTTGAACCGACAAAAGACAACAACTCTTTTATCCCTATATTC
AAGAATTACACAAAGTGACACCAGTGTGGTAGAGTGGTATCAATTACCAA
CTTGGCAACAACACTCTAGGCTACCAATGGTGCCAATCACCTTTGCAACT
ATTGAACTAGTTTAATTTCTACAAGTACAATCATGGCTACTTCACCAGTG
TCACTATAACACGGCATACCTCTCTATCTTGGTGCTTGCTTGTCATGTTA
CCCATTTCCAGAGGGGGGGGGGATATTTCCAATCAAATTCAGTCGAAAAT
TAACGGAGCGCGCTGATGTCATTAATAAAATTTACCTGCTGTGGCCTTAG
GACTTTATTTGCATTAATCAGACTATCAGCGATAGACACAACTGTCGATG
AAACAATTCACAATAAGACAAGAAACTTCCAAGGAATTAGATATATCAGA
TTTTCGCATGCCGGACCCTTTTCCACAGACTCATGTACTGGGTGGACCAG
GATAATGGCAGAATTGACCGCGCTGCGATGGACGGCAGTGGCCAAACCAC
CATCATCACGGGCCTGAGTATGCCCCGCCCCATTGCAATAGACTATTATG
GTGAGAATACAGACTCTAGTATACAGAACATATTCTAATGCATATGCATA
TCTTTACTCAAATCAAATAAGCACATGTACAAGTCTGAAAACTTGTGTTA
GTAGATATTTGCGATACGGTTCATAGTATGCTTTTACTATATAACTGGGA
AGAAAGCTTATTTATTGACCTTTGCAGTATTAGCCTGTGCAAGTGTACAT
ACTTTCTCTTTCTGTACTTTTATTCAGCATTCTTAGTATTACGGCTGCAG
CTAGATCACTACATATATATTACTATACATATTTTGTTTATCCCATTTAG
AGGATCGACTGTACTACGTTGATGGTCTGAACCGCATCTTCAGCTCAGAC
CTGCAGGGCAACGACATCCGTGAGGTTCTGTATGAAGCCGGGAAGATGGT
TAATGGAATCGCGGTTGATGCGAACTACGTCTACTGGTCTTCCAGCTGGT
ATGATGGTGGGAAAATCGGAAAGTGAGGAATTTCCTGAATATACCTCCTA
GTCAGACAACTGTAATTCCCTGCTGGTGAAGATTTATTTGTACAATCTAC
ATTATGAAGTCATATTGATGCATATGCGTTTACATGCGTTTACATATCCA
GCATTACTGTGGACTGATGTGTTGATACATGCATATATATAATGTAACAA
CTTAGTATTTATATTAGGCTTATGTAGTTTTAAAATCTTATACCCTAGAG
CTACATATACGCATATGTACATGTAAACAGAAACAGCAAGATGTTCTGTC
CACAACTCCAGGTTGTCCAAGTCTGACCTGACCAAGACTGTCCTGGTGGA
TGGCCTGAATTACC Coding sequence (CDS) from alignment at Sc0000600:50152..55715- >transcript:BL97154_cuf1 ID=transcript:BL97154_cuf1|Name=transcript:BL97154_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4824bp|location=Sequence derived from alignment at Sc0000600:50152..55715- (Branchiostoma lanceolatum)
ATGCTGCGCAAACTGCTGACCACCGCCGTAGTGCTCGCTGCTTTTCATAG
AGCCAGTGCTGAAGGAGAGCCATTGCTTTTGGTGTCTGAACTGCTGGGAC
AAGCTATTCTCCAAGTTGACGTCACTTCCGGATCGACCGTCACACTTCCG
CTCGGACCTGTGGGACAGCCCCTTGGACTGGACTACGACCCGCTCACCGA
CTACGTGTACTGGTCAAATCTTCGGGACAACGACATCAAACGGGCTCGTC
GTGATGGAAGTGGCAGGGAGATCATCATGGATACCGGCAAAGATGCCAGG
GGCCTTGCATTGGACCACGCTGGTGAGAAGGTATTTTGGTCTGTCTATGA
CGGAAAGACTATCTCTGAAGCAAAGACGGATGGCTCGTCCGCCATGACAC
TTCTGACGTCACCAGCCATCGGGCGTCCTTACGGCATTGTCCTGGACCCC
AGGAATGGACTCATGTACTGGGTGGACCAGGATAATGGCAGAATTGACCG
CGCTGCGATGGACGGCAGTGGCCAAACCACCATCATCACGGGCCTGAGTA
TGCCCCGCCCCATTGCAATAGACTATTATGAGGATCGACTGTACTACGTT
GATGGTCTGAACCGCATCTTCAGCTCAGACCTGCAGGGCAACGACATCCG
TGAGGTTCTGTATGAAGCCGGGAAGATGGTTAATGGAATCGCGGTTGATG
CGAACTACGTCTACTGGTCTTCCAGCTGGTATGATGGTGGGAAAATCGGA
AAGTTGTCCAAGTCTGACCTGACCAAGACTGTCCTGGTGGATGGCCTGAA
TTACATGCTGCGCAAACTGCTGACCACCGCCGTAGTGCTCGCTGCTTTTC
ATAGAGCCAGTGCTGAAGGAGAGCCATTGCTTTTGGTGTCTGAACTGCTG
GGACAAGCTATTCTCCAAGTTGACGTCACTTCCGGATCGACCGTCACACT
TCCGCTCGGACCTGTGGGACAGCCCCTTGGACTGGACTACGACCCGCTCA
CCGACTACGTGTACTGGTCAAATCTTCGGGACAACGACATCAAACGGGCT
CGTCGTGATGGAAGTGGCAGGGAGATCATCATGGATACCGGCAAAGATGC
CAGGGGCCTTGCATTGGACCACGCTGGTGAGAAGGTATTTTGGTCTGTCT
ATGACGGAAAGACTATCTCTGAAGCAAAGACGGATGGCTCGTCCGCCATG
ACACTTCTGACGTCACCAGCCATCGGGCGTCCTTACGGCATTGTCCTGGA
CCCCAGGAATGGACTCATGTACTGGGTGGACCAGGATAATGGCAGAATTG
ACCGCGCTGCGATGGACGGCAGTGGCCAAACCACCATCATCACGGGCCTG
AGTATGCCCCGCCCCATTGCAATAGACTATTATGAGGATCGACTGTACTA
CGTTGATGGTCTGAACCGCATCTTCAGCTCAGACCTGCAGGGCAACGACA
TCCGTGAGGTTCTGTATGAAGCCGGGAAGATGGTTAATGGAATCGCGGTT
GATGCGAACTACGTCTACTGGTCTTCCAGCTGGTATGATGGTGGGAAAAT
CGGAAAGTTGTCCAAGTCTGACCTGACCAAGACTGTCCTGGTGGATGGCC
TGAATTACATGCTGCGCAAACTGCTGACCACCGCCGTAGTGCTCGCTGCT
TTTCATAGAGCCAGTGCTGAAGGAGAGCCATTGCTTTTGGTGTCTGAACT
GCTGGGACAAGCTATTCTCCAAGTTGACGTCACTTCCGGATCGACCGTCA
CACTTCCGCTCGGACCTGTGGGACAGCCCCTTGGACTGGACTACGACCCG
CTCACCGACTACGTGTACTGGTCAAATCTTCGGGACAACGACATCAAACG
GGCTCGTCGTGATGGAAGTGGCAGGGAGATCATCATGGATACCGGCAAAG
ATGCCAGGGGCCTTGCATTGGACCACGCTGGTGAGAAGGTATTTTGGTCT
GTCTATGACGGAAAGACTATCTCTGAAGCAAAGACGGATGGCTCGTCCGC
CATGACACTTCTGACGTCACCAGCCATCGGGCGTCCTTACGGCATTGTCC
TGGACCCCAGGAATGGACTCATGTACTGGGTGGACCAGGATAATGGCAGA
ATTGACCGCGCTGCGATGGACGGCAGTGGCCAAACCACCATCATCACGGG
CCTGAGTATGCCCCGCCCCATTGCAATAGACTATTATGAGGATCGACTGT
ACTACGTTGATGGTCTGAACCGCATCTTCAGCTCAGACCTGCAGGGCAAC
GACATCCGTGAGGTTCTGTATGAAGCCGGGAAGATGGTTAATGGAATCGC
GGTTGATGCGAACTACGTCTACTGGTCTTCCAGCTGGTATGATGGTGGGA
AAATCGGAAAGTTGTCCAAGTCTGACCTGACCAAGACTGTCCTGGTGGAT
GGCCTGAATTACATGCTGCGCAAACTGCTGACCACCGCCGTAGTGCTCGC
TGCTTTTCATAGAGCCAGTGCTGAAGGAGAGCCATTGCTTTTGGTGTCTG
AACTGCTGGGACAAGCTATTCTCCAAGTTGACGTCACTTCCGGATCGACC
GTCACACTTCCGCTCGGACCTGTGGGACAGCCCCTTGGACTGGACTACGA
CCCGCTCACCGACTACGTGTACTGGTCAAATCTTCGGGACAACGACATCA
AACGGGCTCGTCGTGATGGAAGTGGCAGGGAGATCATCATGGATACCGGC
AAAGATGCCAGGGGCCTTGCATTGGACCACGCTGGTGAGAAGGTATTTTG
GTCTGTCTATGACGGAAAGACTATCTCTGAAGCAAAGACGGATGGCTCGT
CCGCCATGACACTTCTGACGTCACCAGCCATCGGGCGTCCTTACGGCATT
GTCCTGGACCCCAGGAATGGACTCATGTACTGGGTGGACCAGGATAATGG
CAGAATTGACCGCGCTGCGATGGACGGCAGTGGCCAAACCACCATCATCA
CGGGCCTGAGTATGCCCCGCCCCATTGCAATAGACTATTATGAGGATCGA
CTGTACTACGTTGATGGTCTGAACCGCATCTTCAGCTCAGACCTGCAGGG
CAACGACATCCGTGAGGTTCTGTATGAAGCCGGGAAGATGGTTAATGGAA
TCGCGGTTGATGCGAACTACGTCTACTGGTCTTCCAGCTGGTATGATGGT
GGGAAAATCGGAAAGTTGTCCAAGTCTGACCTGACCAAGACTGTCCTGGT
GGATGGCCTGAATTACATGCTGCGCAAACTGCTGACCACCGCCGTAGTGC
TCGCTGCTTTTCATAGAGCCAGTGCTGAAGGAGAGCCATTGCTTTTGGTG
TCTGAACTGCTGGGACAAGCTATTCTCCAAGTTGACGTCACTTCCGGATC
GACCGTCACACTTCCGCTCGGACCTGTGGGACAGCCCCTTGGACTGGACT
ACGACCCGCTCACCGACTACGTGTACTGGTCAAATCTTCGGGACAACGAC
ATCAAACGGGCTCGTCGTGATGGAAGTGGCAGGGAGATCATCATGGATAC
CGGCAAAGATGCCAGGGGCCTTGCATTGGACCACGCTGGTGAGAAGGTAT
TTTGGTCTGTCTATGACGGAAAGACTATCTCTGAAGCAAAGACGGATGGC
TCGTCCGCCATGACACTTCTGACGTCACCAGCCATCGGGCGTCCTTACGG
CATTGTCCTGGACCCCAGGAATGGACTCATGTACTGGGTGGACCAGGATA
ATGGCAGAATTGACCGCGCTGCGATGGACGGCAGTGGCCAAACCACCATC
ATCACGGGCCTGAGTATGCCCCGCCCCATTGCAATAGACTATTATGAGGA
TCGACTGTACTACGTTGATGGTCTGAACCGCATCTTCAGCTCAGACCTGC
AGGGCAACGACATCCGTGAGGTTCTGTATGAAGCCGGGAAGATGGTTAAT
GGAATCGCGGTTGATGCGAACTACGTCTACTGGTCTTCCAGCTGGTATGA
TGGTGGGAAAATCGGAAAGTTGTCCAAGTCTGACCTGACCAAGACTGTCC
TGGTGGATGGCCTGAATTACATGCTGCGCAAACTGCTGACCACCGCCGTA
GTGCTCGCTGCTTTTCATAGAGCCAGTGCTGAAGGAGAGCCATTGCTTTT
GGTGTCTGAACTGCTGGGACAAGCTATTCTCCAAGTTGACGTCACTTCCG
GATCGACCGTCACACTTCCGCTCGGACCTGTGGGACAGCCCCTTGGACTG
GACTACGACCCGCTCACCGACTACGTGTACTGGTCAAATCTTCGGGACAA
CGACATCAAACGGGCTCGTCGTGATGGAAGTGGCAGGGAGATCATCATGG
ATACCGGCAAAGATGCCAGGGGCCTTGCATTGGACCACGCTGGTGAGAAG
GTATTTTGGTCTGTCTATGACGGAAAGACTATCTCTGAAGCAAAGACGGA
TGGCTCGTCCGCCATGACACTTCTGACGTCACCAGCCATCGGGCGTCCTT
ACGGCATTGTCCTGGACCCCAGGAATGGACTCATGTACTGGGTGGACCAG
GATAATGGCAGAATTGACCGCGCTGCGATGGACGGCAGTGGCCAAACCAC
CATCATCACGGGCCTGAGTATGCCCCGCCCCATTGCAATAGACTATTATG
AGGATCGACTGTACTACGTTGATGGTCTGAACCGCATCTTCAGCTCAGAC
CTGCAGGGCAACGACATCCGTGAGGTTCTGTATGAAGCCGGGAAGATGGT
TAATGGAATCGCGGTTGATGCGAACTACGTCTACTGGTCTTCCAGCTGGT
ATGATGGTGGGAAAATCGGAAAGTTGTCCAAGTCTGACCTGACCAAGACT
GTCCTGGTGGATGGCCTGAATTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000600 | genome | Sc0000600:50152..55715 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97154_cuf1 |
| Biotype | protein_coding |
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