|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97137_cuf11 >transcript:BL97137_cuf11-protein ID=transcript:BL97137_cuf11-protein|Name=transcript:BL97137_cuf11|organism=Branchiostoma lanceolatum|type=polypeptide|length=309bp
SMYPVGEEVAELLDSLKAVQKSVPALKGVPVEEHGYQTPSDDDSSSDEDD
VAYCPPFAPAILPPPGQHFKINITHVDQPNQMYFQRVMADDEDDSGEDPT
LEETHRQLMMLETISEEIVAQVDTFPPLDNIIAGMACCACYTMDDSWYRA
QVISIQSLDPLAVWVLYVDYGTSELLMADRLKQLPERYQALPMQATKCTL
LGVQPTELTGQESGLLPESTWTHQALKTMITAVDNKVLTACIKDPGPPPS
LLLFESISPKPWLVVQSLVEQGLAVPDTTGLEGLEWVLDNMSTPQSPESA
EEPLEQEVD Run BLAST on NCBI mRNA from alignment at Sc0000040:1584126..1588711+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97137_cuf11 ID=transcript:BL97137_cuf11|Name=transcript:BL97137_cuf11|organism=Branchiostoma lanceolatum|type=mRNA|length=4586bp|location=Sequence derived from alignment at Sc0000040:1584126..1588711+ (Branchiostoma lanceolatum)
TCCATGTATCCAGGTAAGTCCCACCAACACTGTATGCCATGGAGGGTACT
GTGTAAAAGGGAAAGATAGTCCCATAGCATTTTTCAGGGCGGTAGGTTGT
TATCCATGTGGAGAGATGATGGTGAACATTTAGGGGCTGGCAGCACCGGG
GAGAAAGCCTTGTGGAGAGTCCATGTATCCAGGTAAGTCCCACCAACACT
GTATGCCATGGGAGGGTACTGTGGTAAAGGGAAAGATAGTCCCATAGCAT
TTTTCAGGGCGGTAGGTTGTTATCCATGTGGGAGAAATGATGGTGAGCAA
GGGGCTGGCAGCACCGGGGAGAAAGCCTTGTGGAGAGTCCATGTATCCAG
GTAAGTCCCACCAACACTGTATGCCATGGGAGGGTACTGTGGTAAAGGGA
AAGATAGTCCCATAGCATTTTTCAGGGCGGTAGGTTGTTATCCATGTGGA
GAGATGATGGTGAACATTTAGGGGCTGGCAGCACCGGGGAGAAAGCCTTG
TGGAGAGTCCATGTATCCAGGTAAGTCCCACCAACACTGTATGCCATGGG
AGGGTACTGTGGTAAAGGGAAAGATAGTCCCATAGCATTTTTCAGGGCGG
TAGGTTGTTATCCATGTGGAGAGATGATGGTGAACATTTAGGGGCTGGCA
GCACCGGGGAGAAAGCCTTGTGGAGAGTCCATGTATCCAGGTAAGTAAGT
CCCGATACACACTAGGAATATTTTTTGGACGTACGACAATGAGGCACGTT
ACTTTGTCGTACGTTTCATCCAGGGTGTACGTACGACGAAATCGTACGAG
CCATAAAAATGCCTGACGTATGTCGCTCGGGGCCGATTCACACCCAGGAA
AAAATACGACATATGACCAGTGTGTATTGGGTCTAAGTCCCACCAACACT
GTATGCAAGGGGAGGGTATGGCACATGTTCGTTATACCTAACACTATGGC
TGTGTACGTAAAAAAATTTTCTACAGGTATACAGGTACAGTGGTTTACTT
AAGGTACAGGTCTAGACCTGTATGTGACACTGTTCAATAACATCAGAAGG
GTCTATATTTTTGTACAAATGTCTAATATGTCTAATTGAATAATACATGA
TGGTTGCTTGAATAGTATTATCCAGTATTTGATTATACTGCTGCCGGGGT
CCCTGACATGGGTGGGCAGCAGTCAGCTAGTCTTCACACGCGGCTCTGTC
CAGGGGGTTCACGCTGGTTAGGCTGCACACCTTAATGTTGTATTTAGTGT
CATTGGTGACCTAAGCGCTTAAAGACTGTAGAACCTTTATCCCTGCTACA
GTTAAGCTGTGGAACAGCCTCCCGCAGGACATTGTGAACCTCAAGGACCC
ACAGAACTTTAAATGTAATTTATTGTAAAGTAAACGCCCACCTCAGCGCC
ACTCGTCAGCGCCCTGTATAATGAACATTACCAGTTCTGCTGCTAATGCT
GAGGACGAGGCCATAGCATAGATAAAAAAAAAAATTTTTTTTAAATGTTC
TTACTTCAGTGGGAGAGGAGGTGGCAGAGCTCCTGGACAGCCTGAAGGCA
GTTCAGAAGAGCGTGCCTGCGCTGAAGGGAGTCCCAGTAGAGGAGCACGG
GTACCAGACCCCATCAGATGATGACAGCAGTAGTGATGAGGATGATGTGG
CGTATTGTCCGCCGTTTGCCCCGGCCATACTGCCTCCACCTGGTCAACAC
TTCAAGATCAACATCACTCATGTGGACCAGCCTAACCAGGTAACACACAC
CACTAACTGTTCCACTAACTGTGTTTCCCTTGCATTCAGGAGGTTTCTGG
TTCAAATCCCGGTTGGGCCATACCAAAGATTTTTTTTAAATGGTTCATAC
AAAATGATATACCTCAACTTCTTACCCTGCCATTATGCCACCTTGATGCA
GATGTACTTCCAGCGAGTAATGGCTGATGATGAAGATGACAGTGGTGAGG
ACCCTACGTTAGAGGAGACACACCGCCAGCTCATGATGTTGGAAACTATT
AGTGAGGAGATCGTGGCTCAAGTGGACACTTTTCCTCCACTGGACAATAT
CATAGCTGGTAAGTGATTTAGGACTTAATTACTTAGTGAAACATGTTCTT
GGTTAAGTACAGTAGAAGTATAAACTGTCTGATTATACAAGGGGGAACTT
CATACTTAAATCATAACATGAAAAAAAAACTTTTATGGCTTGAAAAAGTA
TTTCAAAATGGAATTACATGTGTTATGATTTCATTGCTCGAACAACAGAT
ACACAGACCGTGTGTCTACTAAATGTTGTATTTTTATGTTTCATTTACTT
AATGAAGAATTGTATTAATTTTTTGGATTAGGGGTGCAAAGTAGTACACA
ATTATGCAATATCTACAACAATTTTGATTTCTGAAACTAAAAAGTTTGGC
TTTTCTCTGAGACCTCTTAACAACTGTATTGTAATCATGTATTGTAATCA
AACTAGACAAGTATTAGTAGTAAAGATGATGACTTGACATAGAAGGAACT
TGCATATTCATAACCAAAACTTTCCTAGTGTAACGTCTTGTTTATATTAG
CTAGCTCTATGTTGTGTGCTGGACAGAGTTGTTTTACCATGACTGTTGTG
TGTAGGGATGGCGTGCTGTGCCTGTTACACCATGGATGACAGCTGGTACC
ATGTAGCTGTAGCTCTGTGCTTTACAGAGCAACCATTTGTAACAACCAAA
ATTTTTCTAGCATAACGTCTTCTCTACAAGGTAGCTCTAGCTCTGTGCTT
GACAAAGGTGTTTTACCTTGACAATGACTGTTGTGTGTACTAGGGATGGC
GTGCTGTGCTTGTTACACCATGGATGACAGCTGGTACCGGGCACAAGTCA
TCAGTATCCAGTCCCTGGACCCGCTGGCAGTCTGGGTTCTGTATGTGGAT
TACGGCACCTCGGAGCTTCTCATGGCCGATAGGTTAGTGTTTTAGTCTTT
ATATGAAATCTTTGAAATCTTTATCACTTTGCAAACTTGAAATAATAAAG
TCTGAATTATAATGGTATTTACATGTATTTTACGTACACACACCTTTACT
CTAAAGTTATGGAGCTTGTGTCCTTAATACATGGAGTATTTGTTAAAAGC
TTGCTCACATATAGCAAATATCTAAAACATCTGAACGCATTGAAATTAGA
ATAGATCTCAGAACTGACGAAAAGACATTGACTTCACTATTTACAGAATA
TGTTATAATTATATGGTCATTACAATAACCATTAGGATGGTGAAAATTGT
ATTAAGCCACACTGACTGGATTAATATATGAATGACATCTGCTTGCACAT
CAATTTTTGTACGTTTGGGACCGCATTGTAGATACCCTTCACTGTAGCGG
TGTTTATAAATGTAAATACTTTGTGTTTGGGAATGCATCTATAAGTAGTG
GCACCTGTGCTGCAGTGCCGTGTGAACCAGTCAGAATTGCCCTGAGTAAG
GTGACAGATGCCTGAGANAATTACCCTGAGTAAGGTGACAGATGCCTGAG
ATGGTCACTGAAACGTTGGTTGAATAAATCACTTGGTTATGTACAAAGAG
TCTTTTCAGTCACTGTACATGTACTGCAGCTATACTTTTTCTATCAGTGG
TATTCAACTGTACTGTACCCTTATACAGGCTGAAGCAGCTGCCAGAGCGT
TACCAGGCCTTACCGATGCAGGCCACCAAATGCACCCTGCTGGGCGTCCA
GCCCACAGAACTGACCGGCCAGGAATCCGGCCTGCTACCAGAGAGTACCT
GGACACACCAGGCTCTCAAGACCATGATAACAGCCGTCGACAACAAGGTG
CTCACAGCCTGCATCAAGGTAAACTTACAGGAACTTGGTAGAAGAAAACT
TTTCAAACTGCAAACATTAAACCAATGCAGTTTCAGGAATATTCGTCAAA
CAGTGACTTGAAAAGGTAGCGAGATACGTACCTCCAAATTTTCTATGTCA
ACTGTACATCTTGATCACGGAATGACCTAGTCTCGCGAGAATACGAGACT
AGGACGAGACTTGTGAAGATCCTCCTGCCTCCCCTGCCTCCTTGCGGAGT
CTCGTCCTAGTCTCGTATTCTCGCGAGACTAGGTCATTCCGTGATCAAGA
TGTACAGTTGACATCGAAAATTTGGAGGTACGTATCTCGCTACCTTTTCA
AGTCATTGTTTGACGAATATTCCTGAAACTGTGATTATATGTGACTGATG
AGCCTCTTCAAAGATAAACCAATGCAAAACTTTAAACATTTACAGTACTG
TGTCCTGCTGTGTTACAGGACCCTGGCCCCCCACCCTCCCTCCTCCTGTT
TGAAAGCATCAGTCCCAAACCCTGGCTGGTGGTCCAGTCTCTGGTGGAGC
AGGGTCTGGCTGTACCTGACACCACGGGGTTGGAGGGGCTGGAGTGGGTG
CTAGACAACATGTCGACCCCACAATCACCAGAGTCTGCGGAGGAACCATT
GGAGCAAGAAGTGGACTAATCTGTTATCGGAAATCATGTTTAAGTCACAA
TTTCCTCTTGGTTGATAATCACAACAAAACCCATCTAGAATTATGATTCA
ATCACATGTAGACCATAGCCATTCTCAAAAATAGCA Coding sequence (CDS) from alignment at Sc0000040:1584126..1588711+ >transcript:BL97137_cuf11 ID=transcript:BL97137_cuf11|Name=transcript:BL97137_cuf11|organism=Branchiostoma lanceolatum|type=CDS|length=5580bp|location=Sequence derived from alignment at Sc0000040:1584126..1588711+ (Branchiostoma lanceolatum)
TCCATGTATCCAGTGGGAGAGGAGGTGGCAGAGCTCCTGGACAGCCTGAA
GGCAGTTCAGAAGAGCGTGCCTGCGCTGAAGGGAGTCCCAGTAGAGGAGC
ACGGGTACCAGACCCCATCAGATGATGACAGCAGTAGTGATGAGGATGAT
GTGGCGTATTGTCCGCCGTTTGCCCCGGCCATACTGCCTCCACCTGGTCA
ACACTTCAAGATCAACATCACTCATGTGGACCAGCCTAACCAGATGTACT
TCCAGCGAGTAATGGCTGATGATGAAGATGACAGTGGTGAGGACCCTACG
TTAGAGGAGACACACCGCCAGCTCATGATGTTGGAAACTATTAGTGAGGA
GATCGTGGCTCAAGTGGACACTTTTCCTCCACTGGACAATATCATAGCTG
GGATGGCGTGCTGTGCTTGTTACACCATGGATGACAGCTGGTACCGGGCA
CAAGTCATCAGTATCCAGTCCCTGGACCCGCTGGCAGTCTGGGTTCTGTA
TGTGGATTACGGCACCTCGGAGCTTCTCATGGCCGATAGGCTGAAGCAGC
TGCCAGAGCGTTACCAGGCCTTACCGATGCAGGCCACCAAATGCACCCTG
CTGGGCGTCCAGCCCACAGAACTGACCGGCCAGGAATCCGGCCTGCTACC
AGAGAGTACCTGGACACACCAGGCTCTCAAGACCATGATAACAGCCGTCG
ACAACAAGGTGCTCACAGCCTGCATCAAGGACCCTGGCCCCCCACCCTCC
CTCCTCCTGTTTGAAAGCATCAGTCCCAAACCCTGGCTGGTGGTCCAGTC
TCTGGTGGAGCAGGGTCTGGCTGTACCTGACACCACGGGGTTGGAGGGGC
TGGAGTGGGTGCTAGACAACATGTCGACCCCACAATCACCAGAGTCTGCG
GAGGAACCATTGGAGCAAGAAGTGGACTAATCCATGTATCCAGTGGGAGA
GGAGGTGGCAGAGCTCCTGGACAGCCTGAAGGCAGTTCAGAAGAGCGTGC
CTGCGCTGAAGGGAGTCCCAGTAGAGGAGCACGGGTACCAGACCCCATCA
GATGATGACAGCAGTAGTGATGAGGATGATGTGGCGTATTGTCCGCCGTT
TGCCCCGGCCATACTGCCTCCACCTGGTCAACACTTCAAGATCAACATCA
CTCATGTGGACCAGCCTAACCAGATGTACTTCCAGCGAGTAATGGCTGAT
GATGAAGATGACAGTGGTGAGGACCCTACGTTAGAGGAGACACACCGCCA
GCTCATGATGTTGGAAACTATTAGTGAGGAGATCGTGGCTCAAGTGGACA
CTTTTCCTCCACTGGACAATATCATAGCTGGGATGGCGTGCTGTGCTTGT
TACACCATGGATGACAGCTGGTACCGGGCACAAGTCATCAGTATCCAGTC
CCTGGACCCGCTGGCAGTCTGGGTTCTGTATGTGGATTACGGCACCTCGG
AGCTTCTCATGGCCGATAGGCTGAAGCAGCTGCCAGAGCGTTACCAGGCC
TTACCGATGCAGGCCACCAAATGCACCCTGCTGGGCGTCCAGCCCACAGA
ACTGACCGGCCAGGAATCCGGCCTGCTACCAGAGAGTACCTGGACACACC
AGGCTCTCAAGACCATGATAACAGCCGTCGACAACAAGGTGCTCACAGCC
TGCATCAAGGACCCTGGCCCCCCACCCTCCCTCCTCCTGTTTGAAAGCAT
CAGTCCCAAACCCTGGCTGGTGGTCCAGTCTCTGGTGGAGCAGGGTCTGG
CTGTACCTGACACCACGGGGTTGGAGGGGCTGGAGTGGGTGCTAGACAAC
ATGTCGACCCCACAATCACCAGAGTCTGCGGAGGAACCATTGGAGCAAGA
AGTGGACTAATCCATGTATCCAGTGGGAGAGGAGGTGGCAGAGCTCCTGG
ACAGCCTGAAGGCAGTTCAGAAGAGCGTGCCTGCGCTGAAGGGAGTCCCA
GTAGAGGAGCACGGGTACCAGACCCCATCAGATGATGACAGCAGTAGTGA
TGAGGATGATGTGGCGTATTGTCCGCCGTTTGCCCCGGCCATACTGCCTC
CACCTGGTCAACACTTCAAGATCAACATCACTCATGTGGACCAGCCTAAC
CAGATGTACTTCCAGCGAGTAATGGCTGATGATGAAGATGACAGTGGTGA
GGACCCTACGTTAGAGGAGACACACCGCCAGCTCATGATGTTGGAAACTA
TTAGTGAGGAGATCGTGGCTCAAGTGGACACTTTTCCTCCACTGGACAAT
ATCATAGCTGGGATGGCGTGCTGTGCTTGTTACACCATGGATGACAGCTG
GTACCGGGCACAAGTCATCAGTATCCAGTCCCTGGACCCGCTGGCAGTCT
GGGTTCTGTATGTGGATTACGGCACCTCGGAGCTTCTCATGGCCGATAGG
CTGAAGCAGCTGCCAGAGCGTTACCAGGCCTTACCGATGCAGGCCACCAA
ATGCACCCTGCTGGGCGTCCAGCCCACAGAACTGACCGGCCAGGAATCCG
GCCTGCTACCAGAGAGTACCTGGACACACCAGGCTCTCAAGACCATGATA
ACAGCCGTCGACAACAAGGTGCTCACAGCCTGCATCAAGGACCCTGGCCC
CCCACCCTCCCTCCTCCTGTTTGAAAGCATCAGTCCCAAACCCTGGCTGG
TGGTCCAGTCTCTGGTGGAGCAGGGTCTGGCTGTACCTGACACCACGGGG
TTGGAGGGGCTGGAGTGGGTGCTAGACAACATGTCGACCCCACAATCACC
AGAGTCTGCGGAGGAACCATTGGAGCAAGAAGTGGACTAATCCATGTATC
CAGTGGGAGAGGAGGTGGCAGAGCTCCTGGACAGCCTGAAGGCAGTTCAG
AAGAGCGTGCCTGCGCTGAAGGGAGTCCCAGTAGAGGAGCACGGGTACCA
GACCCCATCAGATGATGACAGCAGTAGTGATGAGGATGATGTGGCGTATT
GTCCGCCGTTTGCCCCGGCCATACTGCCTCCACCTGGTCAACACTTCAAG
ATCAACATCACTCATGTGGACCAGCCTAACCAGATGTACTTCCAGCGAGT
AATGGCTGATGATGAAGATGACAGTGGTGAGGACCCTACGTTAGAGGAGA
CACACCGCCAGCTCATGATGTTGGAAACTATTAGTGAGGAGATCGTGGCT
CAAGTGGACACTTTTCCTCCACTGGACAATATCATAGCTGGGATGGCGTG
CTGTGCTTGTTACACCATGGATGACAGCTGGTACCGGGCACAAGTCATCA
GTATCCAGTCCCTGGACCCGCTGGCAGTCTGGGTTCTGTATGTGGATTAC
GGCACCTCGGAGCTTCTCATGGCCGATAGGCTGAAGCAGCTGCCAGAGCG
TTACCAGGCCTTACCGATGCAGGCCACCAAATGCACCCTGCTGGGCGTCC
AGCCCACAGAACTGACCGGCCAGGAATCCGGCCTGCTACCAGAGAGTACC
TGGACACACCAGGCTCTCAAGACCATGATAACAGCCGTCGACAACAAGGT
GCTCACAGCCTGCATCAAGGACCCTGGCCCCCCACCCTCCCTCCTCCTGT
TTGAAAGCATCAGTCCCAAACCCTGGCTGGTGGTCCAGTCTCTGGTGGAG
CAGGGTCTGGCTGTACCTGACACCACGGGGTTGGAGGGGCTGGAGTGGGT
GCTAGACAACATGTCGACCCCACAATCACCAGAGTCTGCGGAGGAACCAT
TGGAGCAAGAAGTGGACTAATCCATGTATCCAGTGGGAGAGGAGGTGGCA
GAGCTCCTGGACAGCCTGAAGGCAGTTCAGAAGAGCGTGCCTGCGCTGAA
GGGAGTCCCAGTAGAGGAGCACGGGTACCAGACCCCATCAGATGATGACA
GCAGTAGTGATGAGGATGATGTGGCGTATTGTCCGCCGTTTGCCCCGGCC
ATACTGCCTCCACCTGGTCAACACTTCAAGATCAACATCACTCATGTGGA
CCAGCCTAACCAGATGTACTTCCAGCGAGTAATGGCTGATGATGAAGATG
ACAGTGGTGAGGACCCTACGTTAGAGGAGACACACCGCCAGCTCATGATG
TTGGAAACTATTAGTGAGGAGATCGTGGCTCAAGTGGACACTTTTCCTCC
ACTGGACAATATCATAGCTGGGATGGCGTGCTGTGCTTGTTACACCATGG
ATGACAGCTGGTACCGGGCACAAGTCATCAGTATCCAGTCCCTGGACCCG
CTGGCAGTCTGGGTTCTGTATGTGGATTACGGCACCTCGGAGCTTCTCAT
GGCCGATAGGCTGAAGCAGCTGCCAGAGCGTTACCAGGCCTTACCGATGC
AGGCCACCAAATGCACCCTGCTGGGCGTCCAGCCCACAGAACTGACCGGC
CAGGAATCCGGCCTGCTACCAGAGAGTACCTGGACACACCAGGCTCTCAA
GACCATGATAACAGCCGTCGACAACAAGGTGCTCACAGCCTGCATCAAGG
ACCCTGGCCCCCCACCCTCCCTCCTCCTGTTTGAAAGCATCAGTCCCAAA
CCCTGGCTGGTGGTCCAGTCTCTGGTGGAGCAGGGTCTGGCTGTACCTGA
CACCACGGGGTTGGAGGGGCTGGAGTGGGTGCTAGACAACATGTCGACCC
CACAATCACCAGAGTCTGCGGAGGAACCATTGGAGCAAGAAGTGGACTAA
TCCATGTATCCAGTGGGAGAGGAGGTGGCAGAGCTCCTGGACAGCCTGAA
GGCAGTTCAGAAGAGCGTGCCTGCGCTGAAGGGAGTCCCAGTAGAGGAGC
ACGGGTACCAGACCCCATCAGATGATGACAGCAGTAGTGATGAGGATGAT
GTGGCGTATTGTCCGCCGTTTGCCCCGGCCATACTGCCTCCACCTGGTCA
ACACTTCAAGATCAACATCACTCATGTGGACCAGCCTAACCAGATGTACT
TCCAGCGAGTAATGGCTGATGATGAAGATGACAGTGGTGAGGACCCTACG
TTAGAGGAGACACACCGCCAGCTCATGATGTTGGAAACTATTAGTGAGGA
GATCGTGGCTCAAGTGGACACTTTTCCTCCACTGGACAATATCATAGCTG
GGATGGCGTGCTGTGCTTGTTACACCATGGATGACAGCTGGTACCGGGCA
CAAGTCATCAGTATCCAGTCCCTGGACCCGCTGGCAGTCTGGGTTCTGTA
TGTGGATTACGGCACCTCGGAGCTTCTCATGGCCGATAGGCTGAAGCAGC
TGCCAGAGCGTTACCAGGCCTTACCGATGCAGGCCACCAAATGCACCCTG
CTGGGCGTCCAGCCCACAGAACTGACCGGCCAGGAATCCGGCCTGCTACC
AGAGAGTACCTGGACACACCAGGCTCTCAAGACCATGATAACAGCCGTCG
ACAACAAGGTGCTCACAGCCTGCATCAAGGACCCTGGCCCCCCACCCTCC
CTCCTCCTGTTTGAAAGCATCAGTCCCAAACCCTGGCTGGTGGTCCAGTC
TCTGGTGGAGCAGGGTCTGGCTGTACCTGACACCACGGGGTTGGAGGGGC
TGGAGTGGGTGCTAGACAACATGTCGACCCCACAATCACCAGAGTCTGCG
GAGGAACCATTGGAGCAAGAAGTGGACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000040 | genome | Sc0000040:1584126..1588711 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97137_cuf11 |
| Biotype | protein_coding |
|
