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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97134_cuf3 >transcript:BL97134_cuf3-protein ID=transcript:BL97134_cuf3-protein|Name=transcript:BL97134_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=222bp
SSVDRFGSQDSSQGGEDTSSKDSSPKQKRKQRVRTSWKPSRWELVFVTHI KHPCHFLVQRLSDNDRVDAMMKAINRFCNGQEPEHVNLDSMAVGDLCLAQ YSFDHKWYRGRIRTVSGGASDESSDSGADKKEPMVEVAYVDYGNSELVPV RRLRKMPQRFQTIPEMSMCCSLVDIVPIDKGNRKVVPGSHTSLRKDGWGQ ASSPEDPESLRKSTVCRSTQAT Run BLAST on NCBI mRNA from alignment at Sc0000040:1559542..1564059+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97134_cuf3 ID=transcript:BL97134_cuf3|Name=transcript:BL97134_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=4518bp|location=Sequence derived from alignment at Sc0000040:1559542..1564059+ (Branchiostoma lanceolatum) CAGCTCGGTGGACAGGTTTGGGTCCCAGGACTCCAGTCAGGGAGGGGAGG
ACACCTCCAGTAAGGACAGCAGCCCCAAACAGAAGAGGAAACAGAGAGTC
AGGACCAGCTGGAAACCAAGTATAACATTTTCCAATCTCCTGCTGTAGAT
CTGACATTGTTAGATTAGCTTAGAAACGTCTGACCGTTTCCAAAATCATA
TCCAGTTGCTTGAGTAACAGCTATTTGGTAAATCTTTTACCTGGATGTCT
AATTTTCATTGATGTTAGATTAGCTTACTTAGCTATTTAGTTTATGAATA
AAGTTTTATCACTTCAAAATATTTCTATCAATAGAAGGGAAAGAAGGGAA
TATTAAATCTCTTTTTGCTTTTATGATGACCTCTAGCTAAAGTTTAAATG
AGAACCATTAAGAAATAGATTGGCCTTATTGTGAGATTTGTAAACCTTAT
CACTTGTACAGGTCGCTGGGAGCTTGTTTTTGTGACCCACATCAAACACC
CGTGCCACTTCCTGGTGCAGCGACTGTCAGACAACGATCGAGTCGACGCC
ATGATGAAGGCCATCAACAGGTTCTGTAACGGTCAGGAGCCTGAACATGT
CAACTTGGACAGCATGGCAGTGGGTAGGGGCATTTCCTGCACTTGTGTGT
GTGTGAAGATGTGTGTGTGAAGATGTGTGTGTGAAGATGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGATGTGTGTGCGTGTACAT
GTGCGTGGATGCCATGATAAAGGCCACACAGGCCACGCAAACAAGGTCGA
AGTGAACAGTTACTGACTGAATCCAAGGGGTCATCGTCTTTATTTGAATA
TAATCAACTCTTCAGATTCTGAAGTTTTGTGTTAGGTCTACATGGCATAT
AGTATAATAGATCATAAGTAGAATTTCTACATGCTATTCCACTCCAGGTG
ACCTGTGCCTTGCACAGTACAGCTTTGACCACAAGTGGTACCGAGGTCGG
ATCAGGACAGTCTCGGGAGGAGCCTCCGACGAATCCTCGGACAGCGGGGC
AGACAAGAAAGAACCCATGGTGGAGGTGGCTTATGTAGACTACGGAAACT
CAGAACTTGTACCCGTCAGAAGGTAATTTAAAGAAAACATTCTTAAGAGA
CTCAGATAGGGTTTATACTCCCTATAAATTTCAAAGAGGATGATATTATA
GTGGCATGTTTTCAGTAACTGTAAGAAATGTTGTGACCTTGAAAACCTTT
CTTTTGTCAATGTTTTTACAAAATTACCTTATTTATTGTTTATCACTGAT
TGTAGAAGATTCGTTATTAACAAGAATTTATTATTAGTATTACTGTAACA
GTATAATTATTATTGTGTAATGAGAGTTCACATTTTTGACATGGAACATA
TTGTATGCCAACGTAATTATAAGGCTGCACCAAGTAATTTTTATGGATGA
CGTCCTTTGGAGACCCTAAATCTAATGCGAGAGCGCGAAAAAAACACAAG
AAGGGCCGAAAAAAACAAGATGCCTAGATTAGAAATATAATAGTCAACGA
CGCATGTTAGGACACACATTGAATGAGAGAACACAGTGTAACAACTAACA
ATTCTTTTATTCATCAGGAAAACAGCAACAATTTGAATGAATCATTTGAA
GTTGAACAGCAGTTGTTGTACTGTTCTGTTTCTTTCCATATCCCATTAAT
TTTGCAGGCCTGCAGAAACATAGTATATTAAAAATGAACTCTTTGGTCAT
AGTTACAGGCAGCAAATTTTTTTTTTCTGGGAACAGACCAAAATCAATGC
GTGCGCGGACGTCATCCATAAAAATTACTTGGTGTAGCCTAATACATATA
CCTGGGTCTTCTTGATAAGAGGGAGATGTAATGTATCAGCTTGTTAGTAA
ACTTTCCATACCTTTTACTCCAGGCTGAGGAAGATGCCGCAGAGGTTCCA
GACTATTCCTGAGATGTCCATGTGCTGTTCTCTGGTGGACATAGTCCCTA
TAGATAAGGTATGATCATTATTAGACCAGTATGTCTTGTGTCTCTTTGGA
AAACGGCGCATTATCATACACCAAATACCAGTTACTCACAAACAACTGGA
TAGATGATCAGATGTTTCAGTTGCATCCACTACCTTTTGTCAGTGACACT
TGTATCTTTAGTTATGACCTGGATGTCCAACCTCCTTTGACAATACCTAT
CATATACCTTACAGTTCTTTTGATTTAATGCGTAGCATGAAAAAAACTAA
CTTTGAATGTTCTGATCACGAACTCTCACCCTAGTAATAACATTACGGTT
CAGTTCTTGAACATCAGACAATAGACATCTTAGCATTAGTGCATGCCCTG
TACCATTATGTAATGCCTCACTACAGGAAACAGGAAAGTGGTCCCAGGAA
GCCATACAAGCCTTCGCAAAGATGGTTGGGGACAAGCCAGTTCTCCTGAA
GGTGGGTTGCACTTTCTTTGGGTTGTTGCCTTATTATTCAAATCTGAAGG
TTCTGAGTTTTAATCCCTGGCCTGAAGCCTCAACGTTGTGCCCTTGGTAA
GATGTAATGTACACAAAACACCAAATCCTATTTCATCTCTTGACTCAGAT
TGAAATGAGACCCCTAGCTTTTGTTAAGTTTTGGGACGTAAAGCAGTAGG
TCCCGTGTTTGAGGAGAGCCATGCATGAGCAGTATAAAAAATACGCCATT
CTTAAATGTATCAATGAATTATACATGTACAAGGTTCCCTCCTGGTGTGA
GTGGATCAAACATGTTTTTTTACCTTCTCCTAAGTGCTGCCTAACTCTGT
AACAAATAGGGAATTGCGTGCCAAATGGATTCTTCAGTGTGCTAAAGGTT
AAACCTTTACACAAGTTACAGTCTGGGTTCATGGTTGACATCAGCTGTTA
TATATATTTGTAATGTCAATCTTTCTTCCAATTCAGGAATTTTTGAAGAC
AGTTAATGTTATTATTCCAGATCCTGAATCATTTCAGAAGTCTACTTACA
AAATGTGGTAAATATCTGATTCAGTAATTATTGAAAAACTCTCTCTCTCT
CTTTCCCCCTCTAATCCATTTTAACACATTTTATTTCCCATCATATGGGG
GTTGGACGTGCTTGCACATGGATGGGGGAGCCCCAGAACTCCTCATCAAG
TGCAAGTCTTTTTTGTAGCAAGAGTTTTTACGGCTGGATGCCCTTCCTAA
CGCCAACCCAAACCCTACTGTAGGGCATAGGACTATTAATCTTTTATCAT
GTGTAATATTATTCCAGATCCAGAATCACTCCGGAAGTCTACTGTATGTA
GATCTACACAAGCCACCTAATGAAGACATAGACACGGACATGCCTGTGTC
TCTCCGTGATGCCCTGGTGTTCCTGGAGGTGGCCTACCTCAGGTCCCCAC
ACTCCGTACCATCCTTTACTGGTAAGATCTCTCTCTCTCTCTCTCTATCC
AACTTAACGTCTTTTGTTCCCCATCATCTGGGGGTTGGACGTGCTTGCAC
ATGGATGGGAAAGCCCCAGAACTCCTCATCAAGTGCAAGTCCTTTTTTGT
AGCAAGAGTTTTTACGACTGGATGCCCTTCCTAACGCCAACCCAAACCCT
ACTGCTGGGCTTAGGACATGGGAAATGTGTGTTAAGTGCCTTTCCCAAGG
GCACAACGTTGCGTGCATGTCCGGACATGTCTGGGTACTCCACTGGGGAT
TGAACCTGGGTCTTATTGGTTCATAGCCGGATGCTGTGCCACTGTGCTAC
ACAGACGCCAGATGTCCGTTAAATACAAATTGTGAAGTCTCTGTCTGCCC
TCTAGAACTTGGAAGAATCCCTTCAATCTGATAAATGATTGATCTTTTGA
AGATGCACTCAGGCAAAAGCAGCAGACAAAGGATATAGTCACTGTTAATT
TGTGATTGATGCCTGTGTACCTCAACTGGTAGCACCCTCACAGTTGATCA
AGAGCTTTGCTAACTGGTAAACCCTGGTTCAATCCCGTGAATTCTCAGTT
ATGGCTGCACCTGTCTTTATACAGACAGTGTGAAAGATTGGGCCTGGCAT
ACAATTTATGCTAGTAGGTCCTTACCTTAGATGATGTTGTTAACATTTCA
ATATATTTCATCAAGACTAAAAGCCATTTTCAGTGGGGTCGTGTGGCGTA
ACGGCAGGGTTTTCGGCCCAGAACCCAGCGGTTGTTTGAATCCCCTAGGC
CAGATGCCACCCATCTTGTGCGCTTGGGAAAAAGGCACTTTGCACATCAA
CTTTCCTCACTCCACCAAAGTGTGTAAAAACGGGTATATTATGTGTGGGT
CACGACACCAGCAGTAGCTGCCTTTGTCTCACGTGTATCGCACTATTGCA
ATTCTGATAAAATCAAATCAATAAATACATATGGCTGTTGTGATCCTGTT
CCAGCATCTGTTCTGCAGCCCAGAAGGAAGTTCCTGCCAGCCGAACCCCT
GCTCCAGGGGCAGGACATCCCCGTGTTGGGCAGCCATGTCGCAGGGCCAG
ACCTCTTCTATGTACAAG Coding sequence (CDS) from alignment at Sc0000040:1559542..1564059+ >transcript:BL97134_cuf3 ID=transcript:BL97134_cuf3|Name=transcript:BL97134_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=4014bp|location=Sequence derived from alignment at Sc0000040:1559542..1564059+ (Branchiostoma lanceolatum) AGCTCGGTGGACAGGTTTGGGTCCCAGGACTCCAGTCAGGGAGGGGAGGA CACCTCCAGTAAGGACAGCAGCCCCAAACAGAAGAGGAAACAGAGAGTCA GGACCAGCTGGAAACCAAGTCGCTGGGAGCTTGTTTTTGTGACCCACATC AAACACCCGTGCCACTTCCTGGTGCAGCGACTGTCAGACAACGATCGAGT CGACGCCATGATGAAGGCCATCAACAGGTTCTGTAACGGTCAGGAGCCTG AACATGTCAACTTGGACAGCATGGCAGTGGGTGACCTGTGCCTTGCACAG TACAGCTTTGACCACAAGTGGTACCGAGGTCGGATCAGGACAGTCTCGGG AGGAGCCTCCGACGAATCCTCGGACAGCGGGGCAGACAAGAAAGAACCCA TGGTGGAGGTGGCTTATGTAGACTACGGAAACTCAGAACTTGTACCCGTC AGAAGGCTGAGGAAGATGCCGCAGAGGTTCCAGACTATTCCTGAGATGTC CATGTGCTGTTCTCTGGTGGACATAGTCCCTATAGATAAGGGAAACAGGA AAGTGGTCCCAGGAAGCCATACAAGCCTTCGCAAAGATGGTTGGGGACAA GCCAGTTCTCCTGAAGATCCAGAATCACTCCGGAAGTCTACTGTATGTAG ATCTACACAAGCCACCTAAAGCTCGGTGGACAGGTTTGGGTCCCAGGACT CCAGTCAGGGAGGGGAGGACACCTCCAGTAAGGACAGCAGCCCCAAACAG AAGAGGAAACAGAGAGTCAGGACCAGCTGGAAACCAAGTCGCTGGGAGCT TGTTTTTGTGACCCACATCAAACACCCGTGCCACTTCCTGGTGCAGCGAC TGTCAGACAACGATCGAGTCGACGCCATGATGAAGGCCATCAACAGGTTC TGTAACGGTCAGGAGCCTGAACATGTCAACTTGGACAGCATGGCAGTGGG TGACCTGTGCCTTGCACAGTACAGCTTTGACCACAAGTGGTACCGAGGTC GGATCAGGACAGTCTCGGGAGGAGCCTCCGACGAATCCTCGGACAGCGGG GCAGACAAGAAAGAACCCATGGTGGAGGTGGCTTATGTAGACTACGGAAA CTCAGAACTTGTACCCGTCAGAAGGCTGAGGAAGATGCCGCAGAGGTTCC AGACTATTCCTGAGATGTCCATGTGCTGTTCTCTGGTGGACATAGTCCCT ATAGATAAGGGAAACAGGAAAGTGGTCCCAGGAAGCCATACAAGCCTTCG CAAAGATGGTTGGGGACAAGCCAGTTCTCCTGAAGATCCAGAATCACTCC GGAAGTCTACTGTATGTAGATCTACACAAGCCACCTAAAGCTCGGTGGAC AGGTTTGGGTCCCAGGACTCCAGTCAGGGAGGGGAGGACACCTCCAGTAA GGACAGCAGCCCCAAACAGAAGAGGAAACAGAGAGTCAGGACCAGCTGGA AACCAAGTCGCTGGGAGCTTGTTTTTGTGACCCACATCAAACACCCGTGC CACTTCCTGGTGCAGCGACTGTCAGACAACGATCGAGTCGACGCCATGAT GAAGGCCATCAACAGGTTCTGTAACGGTCAGGAGCCTGAACATGTCAACT TGGACAGCATGGCAGTGGGTGACCTGTGCCTTGCACAGTACAGCTTTGAC CACAAGTGGTACCGAGGTCGGATCAGGACAGTCTCGGGAGGAGCCTCCGA CGAATCCTCGGACAGCGGGGCAGACAAGAAAGAACCCATGGTGGAGGTGG CTTATGTAGACTACGGAAACTCAGAACTTGTACCCGTCAGAAGGCTGAGG AAGATGCCGCAGAGGTTCCAGACTATTCCTGAGATGTCCATGTGCTGTTC TCTGGTGGACATAGTCCCTATAGATAAGGGAAACAGGAAAGTGGTCCCAG GAAGCCATACAAGCCTTCGCAAAGATGGTTGGGGACAAGCCAGTTCTCCT GAAGATCCAGAATCACTCCGGAAGTCTACTGTATGTAGATCTACACAAGC CACCTAAAGCTCGGTGGACAGGTTTGGGTCCCAGGACTCCAGTCAGGGAG GGGAGGACACCTCCAGTAAGGACAGCAGCCCCAAACAGAAGAGGAAACAG AGAGTCAGGACCAGCTGGAAACCAAGTCGCTGGGAGCTTGTTTTTGTGAC CCACATCAAACACCCGTGCCACTTCCTGGTGCAGCGACTGTCAGACAACG ATCGAGTCGACGCCATGATGAAGGCCATCAACAGGTTCTGTAACGGTCAG GAGCCTGAACATGTCAACTTGGACAGCATGGCAGTGGGTGACCTGTGCCT TGCACAGTACAGCTTTGACCACAAGTGGTACCGAGGTCGGATCAGGACAG TCTCGGGAGGAGCCTCCGACGAATCCTCGGACAGCGGGGCAGACAAGAAA GAACCCATGGTGGAGGTGGCTTATGTAGACTACGGAAACTCAGAACTTGT ACCCGTCAGAAGGCTGAGGAAGATGCCGCAGAGGTTCCAGACTATTCCTG AGATGTCCATGTGCTGTTCTCTGGTGGACATAGTCCCTATAGATAAGGGA AACAGGAAAGTGGTCCCAGGAAGCCATACAAGCCTTCGCAAAGATGGTTG GGGACAAGCCAGTTCTCCTGAAGATCCAGAATCACTCCGGAAGTCTACTG TATGTAGATCTACACAAGCCACCTAAAGCTCGGTGGACAGGTTTGGGTCC CAGGACTCCAGTCAGGGAGGGGAGGACACCTCCAGTAAGGACAGCAGCCC CAAACAGAAGAGGAAACAGAGAGTCAGGACCAGCTGGAAACCAAGTCGCT GGGAGCTTGTTTTTGTGACCCACATCAAACACCCGTGCCACTTCCTGGTG CAGCGACTGTCAGACAACGATCGAGTCGACGCCATGATGAAGGCCATCAA CAGGTTCTGTAACGGTCAGGAGCCTGAACATGTCAACTTGGACAGCATGG CAGTGGGTGACCTGTGCCTTGCACAGTACAGCTTTGACCACAAGTGGTAC CGAGGTCGGATCAGGACAGTCTCGGGAGGAGCCTCCGACGAATCCTCGGA CAGCGGGGCAGACAAGAAAGAACCCATGGTGGAGGTGGCTTATGTAGACT ACGGAAACTCAGAACTTGTACCCGTCAGAAGGCTGAGGAAGATGCCGCAG AGGTTCCAGACTATTCCTGAGATGTCCATGTGCTGTTCTCTGGTGGACAT AGTCCCTATAGATAAGGGAAACAGGAAAGTGGTCCCAGGAAGCCATACAA GCCTTCGCAAAGATGGTTGGGGACAAGCCAGTTCTCCTGAAGATCCAGAA TCACTCCGGAAGTCTACTGTATGTAGATCTACACAAGCCACCTAAAGCTC GGTGGACAGGTTTGGGTCCCAGGACTCCAGTCAGGGAGGGGAGGACACCT CCAGTAAGGACAGCAGCCCCAAACAGAAGAGGAAACAGAGAGTCAGGACC AGCTGGAAACCAAGTCGCTGGGAGCTTGTTTTTGTGACCCACATCAAACA CCCGTGCCACTTCCTGGTGCAGCGACTGTCAGACAACGATCGAGTCGACG CCATGATGAAGGCCATCAACAGGTTCTGTAACGGTCAGGAGCCTGAACAT GTCAACTTGGACAGCATGGCAGTGGGTGACCTGTGCCTTGCACAGTACAG CTTTGACCACAAGTGGTACCGAGGTCGGATCAGGACAGTCTCGGGAGGAG CCTCCGACGAATCCTCGGACAGCGGGGCAGACAAGAAAGAACCCATGGTG GAGGTGGCTTATGTAGACTACGGAAACTCAGAACTTGTACCCGTCAGAAG GCTGAGGAAGATGCCGCAGAGGTTCCAGACTATTCCTGAGATGTCCATGT GCTGTTCTCTGGTGGACATAGTCCCTATAGATAAGGGAAACAGGAAAGTG GTCCCAGGAAGCCATACAAGCCTTCGCAAAGATGGTTGGGGACAAGCCAG TTCTCCTGAAGATCCAGAATCACTCCGGAAGTCTACTGTATGTAGATCTA CACAAGCCACCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000040 | genome | Sc0000040:1559542..1564059 + |
Properties
Property Name | Value |
Transcript id | BL97134_cuf3 |
Biotype | protein_coding |
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