|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97097_cuf3 >transcript:BL97097_cuf3-protein ID=transcript:BL97097_cuf3-protein|Name=transcript:BL97097_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=124bp
ASMGLVIRNEMELDLKPLKGGFYVDALDWAYAKVHVGIIGIDYKFLDARV CFKGQAEYEFNIFQEFNFEEVFRLVKLFDRVIKTVVGNVKNTIIRFKQLL GRTTGSIDGIFRDIIEAVQNLPNQ Run BLAST on NCBI mRNA from alignment at Sc0000001:3618120..3621450+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97097_cuf3 ID=transcript:BL97097_cuf3|Name=transcript:BL97097_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3331bp|location=Sequence derived from alignment at Sc0000001:3618120..3621450+ (Branchiostoma lanceolatum) TGCGTCCATGGGCCTGGTCATCAGGAACGAGATGGAACTGGATCTGAGTG
AGTGCACATCTTACTAGTGATAATTTCCTGACTGTAAGTTTTGCGTTGAG
ACTACCAATGGATTGTCAACAAGTACTGTTCTAAAATAATGTGCTGTAAC
CCTTTTCACAGAAAAAAAGTATAACCTTCATTATATTTTGACGGATGAAG
GGAGCTGAAACAGCCGAAACGTCCGTGAAATACAATCATTATGGTTGTTG
ATTTGGTCTATTGTAGCTATGGCAATGTTCATTACAGCTGTACAAAACTG
CTAGTACTGGTAGGCTTATTGGACTTCATTTGACGAGTTAAATCCTTTGA
GAATCATTGAAATAATCAATCAATCAATCAATCAATCAATCAATCGTTCT
TTCTGTCTCAATGTATACACCGCAGCGATCAAAGCCTGGCAGTTACTTAA
GGTAAACAAATTGAGGCAATAACAGGGAATTATTGACTCAGTTGCGTGGG
TCCGGGCTTGCTCAAAGATATAGGCTTTTGTCCTGACTTTGATATGTACC
GTTGTACCGATAAGGTAAAAGTCAACAACGCAGTCTAGTCAATAAAACAT
CATTTAGAGTATAAAGCTGTCTCGGGTTATCACAAGAGGGCTGATTAATG
AGCGATGTTTTGTCAAGTAAGGTCTATAATTCAGATAAAGATTTGGTCAT
GGCTATTGCAATTGGGAAGTAATGAAAAAATGAGCTGCTGAATAACAACT
GTCTGAAGACTAGCTTAGTGAACATGAAAATATCTGCCTGAGTGTCAAGT
CACTTCAGGGTTATGGCGAATATACTAGGTACACTTTGCTTCAATGGCGC
TGGCGACCACCTTATTCATCAGACATAGATTAGATTTCTCTTATACACTA
TAAAAATTCATATCATTCAACCTATATTGAGGCGAAGAATAACGACTTTC
TATGGCCAACAGTGCAATGTGGATCACAACGACAGGCGCTTAGGCCAGAG
TAGCCTGGGTGCCATCCTATTTTTACCGGGGGCTCCTACACTCGCTACCT
TCAAAAGCGAGTGTAGGAGCCCCGGTAGAAGTAGAATGGCACCCAGGCTA
AGGCCATGGCACATCAAGGCAGCCTCCGTCCCTTACTCAATAAATGTGCT
GGAAATTTCACGTTATATTGACAAATAATCATGTATGCAAAAAAATCCAA
TGTACCACAAGGACAAACGGACTATCACTAAAACTTTGCCATATTTATAG
AACCGCTGAAGGGTGGGTTCTATGTGGACGCGCTGGACTGGGCGTACGCC
AAGGTGCACGTGGGAATCATCGGCATCGATTACAAATTCCTGGACGCGAG
AGTCTGTTTCAAAGGGCAGGCGGAGTACGAATTCAATATTTTTCAGGTAA
GCAAACTTAGGGTGCCTGTTACAAAAATTAATTTCACGATATTGTAGCGT
GATGTGAACAAATAGAAATCAATTGAAGGGATCTAAGGTGTGTTTGAAGC
TTTAATTTAAGAGTGTTGTAAAATTAGCATATGAATTCAACATTTTCAAG
ATATGGCAGGCGGCCGGACACACATTCTTTTGCACAGACATATATTGCGG
AATATTGGATTGCTTTGTATTGTCCGATCCATATGCGATGTTATGTTTGA
AGAAAAGCTATATGTGGAATATATGTGCGGTTGTGATATTAAGAATTTCT
GTATGACATCAATCTTGAGCTCTTGCTCATCATTTCATTCTACAGGAGTT
CAACTTCGAAGAGGTTTTCCGATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTGA
GGCGAAGAATAACGACTTTCTATGGCCAACAGTGCAATGTGGATCACAAC
GACAGGCGCTTAGGCCAGAGTAGCCTGGGTGCCATCCTATTTTTACCGGG
GGCTCCTACACTCGCTACCTTCAAAAGCGAGTGTAGGAGCCCCGGTAGAA
GTAGAATGGCACCCAGGCTAAGGCCATGGCACATCAAGGCAGCCTCCGTC
CCTTACTCAATAAATGTGCTGGAAATTTCACGTTATATTGACAAATAATC
ATGTATGCAAAAAAATCCAATGTACCACAAGGACAAACGGACTATCACTA
AAACTTTGCCATATTTATAGAACCGCTGAAGGGTGGGTTCTATGTGGACG
CGCTGGACTGGGCGTACGCCAAGGTGCACGTGGGAATCATCGGCATCGAT
TACAAATTCCTGGACGCGAGAGTCTGTTTCAAAGGGCAGGCGGAGTACGA
ATTCAATATTTTTCAGGTAAGCAAACTTAGGGTGCCTGTTACAAAAATTA
ATTTCACGATATTGTAGCGTGATGTGAACAAATAGAAATCAATTGAAGGG
ATCTAAGGTGTGTTTGAAGCTTTAATTTAAGAGTGTTGTAAAATTAGCAT
ATGAATTCAACATTTTCAAGATATGGCAGGCGGCCGGACACACATTCTTT
TGCACAGACATATATTGCGGAATATTGGATTGCTTTGTATTGTCCGATCC
ATATGCGATGTTATGTTTGAAGAAAAGCTATATGTGGAATATATGTGCGG
TTGTGATATTAAGAATTTCTGTATGACATCAATCTTGAGCTCTTGCTCAT
CATTTCATTCTACAGGAGTTCAACTTCGAAGAGGTTTTCCGATTGGTTAA
ACTGTTTGACCGCGTGATCAAGACGGTCGTTGGAAATGTAAAGAACACCA
TCATCCGTTTCAAGCAGCTTCTGGGAAGGTAAGTAGGACTGTGTACTGGC
ACGTAAGTCCGTAACTTAAACATATATACATACATAAATATGAACATGTC
TACTAGGTAAATAGCAATGACCAAATAGCAGCTATGTGGAGGTACAGGGG
AATCAGATATCAAGATATTTTCTCGTGTTATGACTTTGCACACATCGATG
GCAAACCAACAATTAGACCGCAATCAAAGACACTACAAAAGATATCTATG
GGTGACAGAAAACGATCCCTATATAACCTGTACTAAAGTGTCCTTATACC
TAAAGATAACAAGAGGGAGAAACCTTTGTATTTCCATATGCATGGTATGA
TATCTAGCTTTGAGACCAGTATGGTTGAGGACTACATTCTGCAGGATAAC
AAAACTGTTATACCACTTTATTAAGGGCTTTCTATCAAATTGCATGGTTG
CTGTACTAGTGTAACTATAATGATAGTAACGCGATTAGTCAATAATTGAA
ACTTGTTCAATAGAACGACGGGCTCCATAGACGGTATCTTCCGGGACATC
ATAGAAGCGGTACAGAACCTCCCCAACCAAG Coding sequence (CDS) from alignment at Sc0000001:3618120..3621450+ >transcript:BL97097_cuf3 ID=transcript:BL97097_cuf3|Name=transcript:BL97097_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1488bp|location=Sequence derived from alignment at Sc0000001:3618120..3621450+ (Branchiostoma lanceolatum) GCGTCCATGGGCCTGGTCATCAGGAACGAGATGGAACTGGATCTGAAACC GCTGAAGGGTGGGTTCTATGTGGACGCGCTGGACTGGGCGTACGCCAAGG TGCACGTGGGAATCATCGGCATCGATTACAAATTCCTGGACGCGAGAGTC TGTTTCAAAGGGCAGGCGGAGTACGAATTCAATATTTTTCAGGAGTTCAA CTTCGAAGAGGTTTTCCGATTGGTTAAACTGTTTGACCGCGTGATCAAGA CGGTCGTTGGAAATGTAAAGAACACCATCATCCGTTTCAAGCAGCTTCTG GGAAGAACGACGGGCTCCATAGACGGTATCTTCCGGGACATCATAGAAGC GGTACAGAACCTCCCCAACCAAGCGTCCATGGGCCTGGTCATCAGGAACG AGATGGAACTGGATCTGAAACCGCTGAAGGGTGGGTTCTATGTGGACGCG CTGGACTGGGCGTACGCCAAGGTGCACGTGGGAATCATCGGCATCGATTA CAAATTCCTGGACGCGAGAGTCTGTTTCAAAGGGCAGGCGGAGTACGAAT TCAATATTTTTCAGGAGTTCAACTTCGAAGAGGTTTTCCGATTGGTTAAA CTGTTTGACCGCGTGATCAAGACGGTCGTTGGAAATGTAAAGAACACCAT CATCCGTTTCAAGCAGCTTCTGGGAAGAACGACGGGCTCCATAGACGGTA TCTTCCGGGACATCATAGAAGCGGTACAGAACCTCCCCAACCAAGCGTCC ATGGGCCTGGTCATCAGGAACGAGATGGAACTGGATCTGAAACCGCTGAA GGGTGGGTTCTATGTGGACGCGCTGGACTGGGCGTACGCCAAGGTGCACG TGGGAATCATCGGCATCGATTACAAATTCCTGGACGCGAGAGTCTGTTTC AAAGGGCAGGCGGAGTACGAATTCAATATTTTTCAGGAGTTCAACTTCGA AGAGGTTTTCCGATTGGTTAAACTGTTTGACCGCGTGATCAAGACGGTCG TTGGAAATGTAAAGAACACCATCATCCGTTTCAAGCAGCTTCTGGGAAGA ACGACGGGCTCCATAGACGGTATCTTCCGGGACATCATAGAAGCGGTACA GAACCTCCCCAACCAAGCGTCCATGGGCCTGGTCATCAGGAACGAGATGG AACTGGATCTGAAACCGCTGAAGGGTGGGTTCTATGTGGACGCGCTGGAC TGGGCGTACGCCAAGGTGCACGTGGGAATCATCGGCATCGATTACAAATT CCTGGACGCGAGAGTCTGTTTCAAAGGGCAGGCGGAGTACGAATTCAATA TTTTTCAGGAGTTCAACTTCGAAGAGGTTTTCCGATTGGTTAAACTGTTT GACCGCGTGATCAAGACGGTCGTTGGAAATGTAAAGAACACCATCATCCG TTTCAAGCAGCTTCTGGGAAGAACGACGGGCTCCATAGACGGTATCTTCC GGGACATCATAGAAGCGGTACAGAACCTCCCCAACCAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000001 | genome | Sc0000001:3618120..3621450 + |
Properties
Property Name | Value |
Transcript id | BL97097_cuf3 |
Biotype | protein_coding |
|