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transcript:BL97093_cuf8 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97093_cuf8
Unique Nametranscript:BL97093_cuf8
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97093_cuf8

>transcript:BL97093_cuf8-protein ID=transcript:BL97093_cuf8-protein|Name=transcript:BL97093_cuf8|organism=Branchiostoma lanceolatum|type=polypeptide|length=178bp
GSFSPDGLEQCETCQIGYYQPEEGSSSCLSCEGNYTTARRGTRTHKDCGV
LCQPGYVSATGLEECYPCPEGYYQQSPGMSVCNACYKGGIRPGKGAKKGA
ASIFECLGRAAYVDVNVTQFELAADLTFNDCFSDPCENGGDCRSISAGYV
CDCVAGYTGVNCEVEIDECLSSPCLNNA
Run BLAST on NCBI

mRNA from alignment at Sc0000001:7094432..7101432-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97093_cuf8 ID=transcript:BL97093_cuf8|Name=transcript:BL97093_cuf8|organism=Branchiostoma lanceolatum|type=mRNA|length=7001bp|location=Sequence derived from alignment at Sc0000001:7094432..7101432- (Branchiostoma lanceolatum)
CTGGCAGTTTCTCCCCTGATGGACTGGAGCAGTGTGAGACGTGTCAGATT GGGTACTACCAGCCCGAGGAGGGGAGCAGCTCCTGCCTGTCCTGCGAGGG GAACTACACCACCGCCAGGAGGGGCACGCGCACGCACAAGGACTGCGGAG GTCAGTAGTGGCCAACTATTGGACATAAAAAAAACAAGGGGTACTTCAGG AACTTACAAAAAAACTTGCAAAGCCAAACAACCCACCCAAGGAAGGTTCA AACACAATAAATGTCTCTCTTGGGACTATACAAAGTGTAAAGTGTAAATT TCTGGTATAGTGGAGGTCAGTTCTACAGGGCAAGGAAGAATACATATTGA TTCTAAAGAATGCAAGTGCTGGCAATCTATGCAGTGGTTTAATTCATGTC TGCAGTTTTTGCAAAATTATCACAACGCAAACAACACAGATTTTTGTCAG TGATGCACTCATTGTGCTCACCACAAACTTTTATCACTGCTCTGCCTCCT TTGACCATGAAATCAAATGCCCTGGAACTTAATTGAACACAAAGTCATCT TGACTATCAGTGGTATGATTATCATATCAGGATTTTATGTTGCATGTTCT CTCAATTCAACTTTTAATTAAAGATAAAACTGAGTCTTGGATCCTTTTTT ACCAATTCTTCCCAAGTGAGCAATGCATTTACTACCAGAACAATGTAGAA ACTTAGAAACAACTATCCATTTCATTGTACCTTGTGATGATAAATTGGAT TTGGATAGCTTTGGTCTCTTGTTGCTTGACACAGTCTCCCCCTGTTCTTC CCCTGGCCCCACCAGTGCTGTGTCAGCCTGGTTATGTGTCAGCCACAGGT CTGGAGGAGTGCTACCCCTGTCCTGAGGGGTACTACCAGCAGAGTCCAGG CATGTCTGTCTGCAACGCCTGTTACAAGGGCGGCATTAGACCTGGCAAGG GAGCCAAGAAAGGGGCGGCTTCCATTTTTGAGTGTCTCGGTAAGATGTTT AGATTTTTGTTTGTTTGTATCACGCAGCAACCTATAGCTCATAGTTGGAG ATAAAATTATGCATTTTTGTGTGTCTTCGTTTGTTTGTATTGCATACCCG GTAATATGCCTCAAACAAGAGCCCACTATGCCCCACTATACAATCCCATG GCCTCTACTCATACAATTTATATTCAGATATCACATAAAAAAATGTAGCA ACTTTTATAAACTTTCAGACACATACATGTATACTATCAAGCACCATCAG TAACTAGGCTGATTAACTGTAGAGACTCTGTTGAAAATCAAACTCATTGA AGTGGAAGCAAGTGGGGATATGACTTCTAGATGTAATCTTACTTCTTGTA CATAATATGCATAGTTTACTCTTATATTATTACAGCCTTTCTCCACAGTA CACCACTTAACAGAGCTATTCAACAACCATGGGTTCTGATGTATAAATTA CGTATAATTAGGATGTAAATCAAATACTGCATTTGATACTGAAAAGTCCT CTCTCTATGGAGAATGAAACTTTGATGTCCATAAAAGTTATATATACAGA GTGACATAGTTATGTGTACAGACATATAAGCCTTTGGCAACAAAGGTACT AGTAATCAAAACTGGCATGCTTCCAAAGGAACTGTATTGCATCATGATAT GCAAGTTTGCAAAGCTGGAGCTACATTTCACACTGCACCATTACATTCTG GACAGCACACTTTGCTTTTCTTCCCTGTATAGTAAAAATTAATGTACAGT TATGACTAGAAATATGACCATGTTACTCTCATACTTGTAGCAGAATGTAC ACCTTAAACTAAAGATACATCCATAAATGTATACTGTACAATGTAGTAGC TCTTAAAGTTACACAATACTGTACAATCATGTAGCTAGCTAGTTATAAAG CAGTAGAAAAAGCAATGACAATAAGTTATAACTTACATTTGCCAAGGGTA CTGTCAACCTTGTTGTTAGTAGTCCATTTGGATCATTGGATGAATGATAT ATTATTGGTAATATGAAACAAAGATGGATTATCAAGTCTGATATTTCCAT CCTGTCCTGTACATGTCATGAATGTCACTGTCACAAAACATCAGAGAATT GGTCCTCCTTGTTGTCAGCTCGGCGGAACTTCTTGCACTTTTTGTGGTTC TTGTGGGAGTGGTACGCGTGCGTCTTGGTCAGCATGTCCGCTACTTCCTC CGTCTCCTCGTCGAACTCCATCGTAAGTTCCGCGATCAGGCTCCGCCGCG CCTGTCCCGGCGACACGTCTCCGAACGTGGGGTTATTCACGACCTGGTCC GTTCCGTTCTTCCAGCTGACAGGGTACCCGCAGATCTCTGTGTCGGTTTT GACGATGGGGTTGGGGTGATCGTTCTCGGAGGGGATGATGAGCTGCTGCT CGATCTGTCTCTGCTGCCTGTCCAGACACATCACAACCCCCATCACAATC GCAGCGATCAGAACAACGACCACGCCAAGCGAGATGAACGTCAACTGGGT TGCCGTCAGACCTGTCTCATGTTTACCATGAGTGGTGACCTTAGAGAGGT CGGCGTAAGCAGTGTGGTTATCCCTACTGTCTGGTGTAACCGGCTTGGTG TAGGCTCTGGCAGTTTTCTGGTCATCCACCCAGGGGTTGCTGAAGTAGTA ATCACCAGTGTACACACTTCTGGTGGCTGTTGACAACCCTTGTGTTGGGA TGACTTCAACAGATGTTGTTGTACTTACTAGTGATGTGCTGGCAATGTCA CTGTTAGTTGGCTGGCGTGTCGTTGTGGTGGAGATATCTTCAGCCAAGGT GGATGTCCTGCATGCCAACGCTGACTGTTTGACAAAGCGCAGCTCCTGGC CTGCCTGTGACTTAGGTGATTGACAGGTGACACGAGTTCTGGCTGTCGTG TCCTGCAACCACTCCCACAGTCCCTGCAGTTCACAGTCGCATCTCCAGGG GTTGTTGTTGAGATTCAGGCTGCGTATCTGCAGTAGTGGTAGGATCACAT CTTCGTCCAAAGACTGCAGACTGTTGTTGTATAAGGATAGGGATTCCAGT GCCACAAGACCTACAAATGACACACCTCCAATCCACTCAATCGTCTGGTT TGACAAATCTAAGGCTTCAAGGGAGTACAAGTTTTTAAAGGCAGTTGTGT TGAGTGTTGTGAACTGGTTACGGTGAAGGCTTAATGTTCTCAGACTTGGG AGGGCGTTGAATGGATCCGTTGGTAAGTCTTTCAGTTTGTTTCCTCCGAG AAACAAGTAGGTAAGTTGTTGCAGCATTGCAAAGGCATTGTTCTCCAGAG TTTCTATCTCGTTGTCTGCAAGTTGAAGGAGATAGAGGTTCTTGGTTTCT GCGAAAGACGTGGTTGGTACAATAGTCAACTTGTTCTCATTCAAATATAA ATGTTGCAAATTCTCTAGTCCAACAAAGGCTTCAGTTGATATACTTGCAA TGGAGTTTTTCTTGAGGTGCAAGTCAAGCAAGTTCTTTAGCCCTTGAAAG GCAAACTTTTCCAGTCTACTAATGTTGTTGTTATTCAAATGCAATGTTTT AAGACTGAGCATTTTGAAGAACAGGCCACTGGAGAGAGTCTGAATATTGT TGTCGTCTAAATCCAGAAGTTGCAGCGTGCTGAAACCTTTGAAGAGTCTA CTAGCGATCTGACTGATGTTGTTGTCTGGAAGGTTTAGGTATCTCAGTTT CTTCAACCCCTTGAAAGCGTCTTCCTCGATAACGTGTATGTTACTTACAG CCAGTGACAGTCGTACTAGGTTGGTCAGGTTGGCAAAAGTGTTCGATCGA ATCACAGTGAAGTTGTTTCCTTGGAGGTACAAGCTCTTTGTTGAAGGCTG TATCTCTGCGGGTATGGCTTTCAGGTTACGATGGTTACAGTACACCGTTC CTCGCTTGCAAACACAGATGCGTGGGCAACGCTTCTTTTGGCCTTCGATA TTGGTTGCCATGAAAAGCACAACAACAACAAGGACACATAGCTTCATAGT TGCAGCCATTTGGAATCTGAAAATAGAAAGTTTTAAAATGTTTTTTTCAG ATTTTTAGCCCTTAAATGAAGATTATGCGATGTGTATACACATGTGTCAG TAAGGTTACTCTTATCACAAACTGTCATTTCCTCTTAGATCAAAGCCAAG AGGAAATGTTTCAGAGTGAATCCAGTGGTGTTAACAAAAATTAAGGCAGA CCACCCATGATTTTCTGTTCCGTAATCCCTTTCAATTGCTTCAAATGCAG GTGCATAATATATCACATGCAGGAAAACATTGGAACTTCAAATTTGATTT CAGATAATTCCATCAAGAATAGATCTCTTCAATTTAAACCTGTTGGAGAA TGGAAGGCATACATTTGTAAACTTAATGTTTCATGCTAAATGACCTCTCT GTGTCGTTAAGAGCTGGAAATCCGATTATTTCAGCATTCAGGAATAATTC CACCAAACTTATAAGACATTAAAAAGATAACATTCTTTTAAGCTATCTGT ATGATTGTAAGAAAAATCAGTCATCTTTTGAATTGACTAAGCCTAATATT TTTGACAGTACAATATCTGCTTAGTTATCACAAGTCTACGAAACTTATTT AATTGGCACGGTGACAGAAGCGTTACGAACTTGACAGCAGTTCAAAAGTG CATGGAGATTTCAATCTCCTTTTCAACCTCAAAACGGACGATGCTTGTAC TAAAGCATGAGAGTGCTAAAACAAACAATCAAATCAAAGACAAGCTTCAA TGACATTACCTTGACAGGTGGTCGTTCCACAGAGAAATTCTCCAGTCAAC GTTCGGGTACGTAACAAAAGAAAGGAGCTGAACTGCCACTGGATGCTGTA TAATGTGGATGTCTGCTCGGTATCGAGCTAGTTAAGAACAAGCTGCGAAT TTCCTGTGCCGCTACGGGCAACTCCCTTACATCCTGTATATCACATGATC AGGATGGGCCTATCACATTGAAAAGACGGGGACAAACTTTCTCAACCAAG TTTTACTGGAATAGATTATTAGAAGCACTAGGTAATGTCTACCAGTGGAC TAGGACAACTCTGTAGTCCTTGAACAATTGTGTGGCCAAAGGCCTATAGA AATAAAAATGGGCACTGCTTTATTTAATTATACACCAAAAGATGTGGGAA GGATTTTAACATGTAATGTCTTCTGGGGTTGATTCTATTTTACAAGCTAT TGACATATCATCACTTCACAACTTCCAATGGTGTATTTTCATTGCCTGAA TCTTTATCTTCTGAGAACAAAAAAAAAAAAAGTTTGGTGCAAGCAAAAGG GCCATGACAAAGTGTAGGACAAGGGACTCAGGGTTGTACAAGGTTGTGTT TGCTATATACTAGTAGGCATTGTCACTTCACAACTTCCAATGGTGTATTT TCATTGCCCGAAAGTTTATCTTCTGAGAGCAAAAAAAAAGCTTGGTGCAA GCAAAAAGGCAATGACAAAGCATAGGACAAGGGACTTCGGGTTGTACAAG GTTGTGTTTGTGTGCGTGATGTGAGAAGGAAGTGGGTCCCTACAGGAGGA GGGGAGGGTGTTATCAGGGGAAACAGGTGTCAGGATGTTTCCTCTTCTCA AGGAAGTGCTGGCCTGGGAATTGGGACATCAGCACCATAGGGGATTACCA CCATCTATAACTGTCAAACATGCACCACCAGCAGAAGGAGGGGGATATAA TCGCCCTTGCAACGTTATCAGATATTAATCAGTTTCTGCAGAGGAATGAA CAAGTAAACACAAGATGCCAGTCAATTTCTTTAGACACAAATGTTTTGAA AATTTTGGCAACTGACACCAGTTCCTTTTCAGCAGTCAGCTGTTTTTCTA GGGTACATAATTTGTAAACCATACCTAGTTGTTACAACTTAGAACATATT TGATTTGTCTATAGATTGAGTTTGATACTTTGTCTACTATTAGCCTTGTA CATAAATACAATATGAGTGGTCCAAAAATAGTTTGTACATGTATTACATG TAGTCTATTCATCCTATAATAACATCACATGTCATTGATTTTGTTAAGAA TAAGATGCTTGTTACAGAATCAGAATTACGGTATATTGTAAGCACAGGGC CGGGATAGCTATCATGATACAGTAAAACTGCCCAAAAAGACCAATCAGGG GACCAATAAAACCTAGTCTATGCGTGGACAGGTGGTCACTGTAGACAGGA TTCGTAATGCATATAATGGGAAAAATTATCTAAGGGATCACCAAAGAATG GTCACATTGGCCATTGCCCAGGTGGTCTTTATGTAGGTGGTCACTTTTAC AGGTTTGAGCAAACTTTATAATGTTAGTGAACTGTGTCTCCCTGTAGGAA GAGCTGCCTATGTGGACGTTAACGTGACCCAGTTTGAGTTGGCAGCAGAC CTGACGTTTAACGACTGTTTCTCCGACCCCTGTGAGAATGGAGGGGACTG CAGGAGCATCAGTGCTGGCTATGTGTGCGACTGTGTGGCAGGCTACACAG GTAAAGCCACCCTCTCACGGGACCCGCGGCACGCTGGCGTCGTCGCTGCG TCCTAAACTGGATTTGTGTTACCCTTGACTTTATAATGGGAATATCATTC AAAACGTACAAGTATGACCCAAAAAACAACAAAACACACAAAGCTTTTAA AAATGTGTTTTTTGTCAATGAAATTCGTTGAGTGCTTTGTCAATTCGATT GGCCGCAGCGACAACGCCGGCGTGCCGCGGGTCCAGTGAGAGGGGGGGAT TTTGACACCTTGTAAATACTTTTGGTCTAGAGTTGTTTTGCAGTATTCTG TGTTGCTATTATTGTTTCAACCATGATACAATGTACTCCAAACTCTTGAT TTGTACCGTACTGCTAAATCTAGATGCTGTGTTCCTAATACATGACTTGT GCAGACTTCATGAACAGTGTCCATTTTTCTTTCTTCCCCAGGTGTAAACT GTGAAGTGGAGATTGATGAGTGCCTGTCCTCCCCTTGTCTGAACAATGCC A

Coding sequence (CDS) from alignment at Sc0000001:7094432..7101432-

>transcript:BL97093_cuf8 ID=transcript:BL97093_cuf8|Name=transcript:BL97093_cuf8|organism=Branchiostoma lanceolatum|type=CDS|length=2136bp|location=Sequence derived from alignment at Sc0000001:7094432..7101432- (Branchiostoma lanceolatum)
GGCAGTTTCTCCCCTGATGGACTGGAGCAGTGTGAGACGTGTCAGATTGG
GTACTACCAGCCCGAGGAGGGGAGCAGCTCCTGCCTGTCCTGCGAGGGGA
ACTACACCACCGCCAGGAGGGGCACGCGCACGCACAAGGACTGCGGAGTG
CTGTGTCAGCCTGGTTATGTGTCAGCCACAGGTCTGGAGGAGTGCTACCC
CTGTCCTGAGGGGTACTACCAGCAGAGTCCAGGCATGTCTGTCTGCAACG
CCTGTTACAAGGGCGGCATTAGACCTGGCAAGGGAGCCAAGAAAGGGGCG
GCTTCCATTTTTGAGTGTCTCGGAAGAGCTGCCTATGTGGACGTTAACGT
GACCCAGTTTGAGTTGGCAGCAGACCTGACGTTTAACGACTGTTTCTCCG
ACCCCTGTGAGAATGGAGGGGACTGCAGGAGCATCAGTGCTGGCTATGTG
TGCGACTGTGTGGCAGGCTACACAGGTGTAAACTGTGAAGTGGAGATTGA
TGAGTGCCTGTCCTCCCCTTGTCTGAACAATGCCGGCAGTTTCTCCCCTG
ATGGACTGGAGCAGTGTGAGACGTGTCAGATTGGGTACTACCAGCCCGAG
GAGGGGAGCAGCTCCTGCCTGTCCTGCGAGGGGAACTACACCACCGCCAG
GAGGGGCACGCGCACGCACAAGGACTGCGGAGTGCTGTGTCAGCCTGGTT
ATGTGTCAGCCACAGGTCTGGAGGAGTGCTACCCCTGTCCTGAGGGGTAC
TACCAGCAGAGTCCAGGCATGTCTGTCTGCAACGCCTGTTACAAGGGCGG
CATTAGACCTGGCAAGGGAGCCAAGAAAGGGGCGGCTTCCATTTTTGAGT
GTCTCGGAAGAGCTGCCTATGTGGACGTTAACGTGACCCAGTTTGAGTTG
GCAGCAGACCTGACGTTTAACGACTGTTTCTCCGACCCCTGTGAGAATGG
AGGGGACTGCAGGAGCATCAGTGCTGGCTATGTGTGCGACTGTGTGGCAG
GCTACACAGGTGTAAACTGTGAAGTGGAGATTGATGAGTGCCTGTCCTCC
CCTTGTCTGAACAATGCCGGCAGTTTCTCCCCTGATGGACTGGAGCAGTG
TGAGACGTGTCAGATTGGGTACTACCAGCCCGAGGAGGGGAGCAGCTCCT
GCCTGTCCTGCGAGGGGAACTACACCACCGCCAGGAGGGGCACGCGCACG
CACAAGGACTGCGGAGTGCTGTGTCAGCCTGGTTATGTGTCAGCCACAGG
TCTGGAGGAGTGCTACCCCTGTCCTGAGGGGTACTACCAGCAGAGTCCAG
GCATGTCTGTCTGCAACGCCTGTTACAAGGGCGGCATTAGACCTGGCAAG
GGAGCCAAGAAAGGGGCGGCTTCCATTTTTGAGTGTCTCGGAAGAGCTGC
CTATGTGGACGTTAACGTGACCCAGTTTGAGTTGGCAGCAGACCTGACGT
TTAACGACTGTTTCTCCGACCCCTGTGAGAATGGAGGGGACTGCAGGAGC
ATCAGTGCTGGCTATGTGTGCGACTGTGTGGCAGGCTACACAGGTGTAAA
CTGTGAAGTGGAGATTGATGAGTGCCTGTCCTCCCCTTGTCTGAACAATG
CCGGCAGTTTCTCCCCTGATGGACTGGAGCAGTGTGAGACGTGTCAGATT
GGGTACTACCAGCCCGAGGAGGGGAGCAGCTCCTGCCTGTCCTGCGAGGG
GAACTACACCACCGCCAGGAGGGGCACGCGCACGCACAAGGACTGCGGAG
TGCTGTGTCAGCCTGGTTATGTGTCAGCCACAGGTCTGGAGGAGTGCTAC
CCCTGTCCTGAGGGGTACTACCAGCAGAGTCCAGGCATGTCTGTCTGCAA
CGCCTGTTACAAGGGCGGCATTAGACCTGGCAAGGGAGCCAAGAAAGGGG
CGGCTTCCATTTTTGAGTGTCTCGGAAGAGCTGCCTATGTGGACGTTAAC
GTGACCCAGTTTGAGTTGGCAGCAGACCTGACGTTTAACGACTGTTTCTC
CGACCCCTGTGAGAATGGAGGGGACTGCAGGAGCATCAGTGCTGGCTATG
TGTGCGACTGTGTGGCAGGCTACACAGGTGTAAACTGTGAAGTGGAGATT
GATGAGTGCCTGTCCTCCCCTTGTCTGAACAATGCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97093gene:BL97093Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97093_cuf8transcript:BL97093_cuf8-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97093_cuf8-E1BL97093_cuf8-E1-1564476830-28391Branchiostoma lanceolatumexon
BL97093_cuf8-E2BL97093_cuf8-E2-1564476830-28388Branchiostoma lanceolatumexon
BL97093_cuf8-E3BL97093_cuf8-E3-1564476830-28386Branchiostoma lanceolatumexon
BL97093_cuf8-E4BL97093_cuf8-E4-1564476830-28384Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:7094432..7101432 -
Properties
Property NameValue
Transcript idBL97093_cuf8
Biotypeprotein_coding