transcript:BL97084_cuf6 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97084_cuf6
Unique Nametranscript:BL97084_cuf6
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97084_cuf6

>transcript:BL97084_cuf6-protein ID=transcript:BL97084_cuf6-protein|Name=transcript:BL97084_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=263bp
QEDKKQLRKGAITSLNRIPIQTLDGLHQTATAMAQLTKEDTELSGDAQDL
AVSKLTKMTTFLKEKMEDGTASVQVVELTTQALISGLANVVKAAARRTST
AHDHFTPKVFPWSSTVIQQSLQTISTVKQTVLTTIAPGEKPKVLTTPSLA
IMLQRDECRDFRAGAYVQEDFDSLFSVPSCDDLFRNGTIQPDQVIDTHMT
HFSNNPYQWATNISLEDTVVSLEFTSEGQNIAVRNLTEAVDIILPRDDSS
EFWNTVRISGDGT
Run BLAST on NCBI

mRNA from alignment at Sc0000001:9625642..9627741+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97084_cuf6 ID=transcript:BL97084_cuf6|Name=transcript:BL97084_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=2100bp|location=Sequence derived from alignment at Sc0000001:9625642..9627741+ (Branchiostoma lanceolatum)
CAGGAGGACAAAAAACAGGTAAAAAAACATTACATGGACTGTGACCATCT GTTACTGTATCCCATGTATGATGGAACACCTGTATCATCGCATCATTTAC TGTTAAGATTAGGTTTTATCATTCGGTTGATACGATTGCCGTCTTGTCCA AAACCACCGAGGAATGGGCATCGTTCTAAGAACATCTGAAGTCTTCACAG CAAGCGTTATCTGACAAAGGTCCCAATCTGCTTTTTGTAAACTGAAATCG AACTTAATCATAAAGTTGTTAGTTTGCGTACCATCTGGCCTGGTATTGAA TATAAAAAATACACATGATTGCCAGATACTTATGCCATGAGCGATTCTCA TTATTTCCTATACGTGAAGAGTTTTTTCAAAGATCCTGCCTACAAGTAAA GTGTTTTTCGCTCTTCTCCACATCAGCTGCGGAAAGGTGCCATTACCAGT TTGAATAGGATCCCGATTCAAACACTGGACGGTCTGCATCAAACTGCTAC CGCCATGGCTCAACTTACCAAAGAGGACACCGAGCTCTCGGGGGACGCAC AGGTAAAAAAATAAAGACTTGCAATGTAACCAGTGAACTGGGCTGTGAAT AACAAATCATAAAATACCAATTGTATCCATCACTAGTATCCCTTCCGCTT GCAACCATGCACTGGATAATACTTTATCTAGTAACGTTTTTGATTTCGTT ATAACTACACGAGATGTAGTGAGGTCTTGAAAGCACCACTGTACCTAGTT TTCTAGAGATACGTTTAATTGTAAGTCTAATCATTCAGTCAACATTTGTT TGATCTCTTCCTCCCTGTTTGCCAGGATCTGGCTGTATCGAAACTTACAA AAATGACGACATTTCTGAAGGAAAAAATGGAGGATGGAACAGCAAGCGTT CAGGTAGTAGAGCTTACCACACAGGCTCTAATATCCGGCCTGGCTAATGT CGTCAAAGCAGCTGCCAGGAGAACCTCAACAGCTCATGACCACTTCACGG TGGGTACAAAACATGCTGAGCAAGTACTTTAATTCTAATCACAATGGTAA ACGTGTATATGAGCTATAGGCTACAAGTATAGCGCGACAAGATGAGATGA TGAGATGTGCTATCGATATAGAATTATGTACACACGTTGAAACGCTATCC TTGCCAGTTTGGGAGGAAATGATGGCCATTTTTAACACAGGTAGTATAGA ATGACACTATGTGATAACCTGTCTTTCTCAACGTTATGTTCTGCTAGATA GGTTCAACGTTTCAAAATCAAACCGGGCAATCTCAAAGGTTGCGTTGAAA CTTTCCTTATTGGTCAAGAGTAAAGTCCTTAGCATAGTCAGCAATAGCAG ATTTTGTCTCATTTCAGCCAAAGGTGTTCCCGTGGTCCTCCACTGTCATA CAACAGTCGCTGCAGACGATATCTACCGTCAAACAAACTGTTCTTACCAC GATAGCCCCTGGGGAGAAACCCAAGGTACTGACCACCCCAAGCCTCGCTA TCATGCTGCAGCGAGACGAATGCCGGGATTTCCGCGCAGGCGCATATGTG CAGGAGGACTTTGATAGTCTGTTCTCAGTACCAAGTTGTGATGACCTGTT CAGGAACGGCACCATCCAACCAGACCAGGTCATCGATACGCATGTAAGTT TCTTACTTGCACGTATAAGCTATGCTTGAAAAGCAAAAACTGTTAATTTT CGTACATTGACAAGCATTCGTCTTGTCTTGGGCACAAACGGTTACTTCGT ATCAGGCAATGGTAATCTTCGTCATGAGACAAATCTCTATGTTTGACAGC TTCCAAATTCTGTCAAAACAGGAATAAAATTTTGACATAAAACTCTAGTT TTTATAACGCTTTTGTTTCATATGATGATATTCTTATATCATGTCTGCTT GTTAGATGACGCACTTCAGCAATAACCCTTATCAGTGGGCTACTAACATA AGTCTGGAGGATACCGTTGTATCATTGGAGTTCACATCTGAAGGCCAGAA TATCGCTGTACGGAACCTAACAGAAGCAGTTGACATCATCCTGCCTCGGG ACGATAGCTCCGAGTTCTGGAACACGGTTCGGATATCAGGGGATGGTACC

Coding sequence (CDS) from alignment at Sc0000001:9625642..9627741+

>transcript:BL97084_cuf6 ID=transcript:BL97084_cuf6|Name=transcript:BL97084_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=3945bp|location=Sequence derived from alignment at Sc0000001:9625642..9627741+ (Branchiostoma lanceolatum)
CAGGAGGACAAAAAACAGCTGCGGAAAGGTGCCATTACCAGTTTGAATAG
GATCCCGATTCAAACACTGGACGGTCTGCATCAAACTGCTACCGCCATGG
CTCAACTTACCAAAGAGGACACCGAGCTCTCGGGGGACGCACAGGATCTG
GCTGTATCGAAACTTACAAAAATGACGACATTTCTGAAGGAAAAAATGGA
GGATGGAACAGCAAGCGTTCAGGTAGTAGAGCTTACCACACAGGCTCTAA
TATCCGGCCTGGCTAATGTCGTCAAAGCAGCTGCCAGGAGAACCTCAACA
GCTCATGACCACTTCACGCCAAAGGTGTTCCCGTGGTCCTCCACTGTCAT
ACAACAGTCGCTGCAGACGATATCTACCGTCAAACAAACTGTTCTTACCA
CGATAGCCCCTGGGGAGAAACCCAAGGTACTGACCACCCCAAGCCTCGCT
ATCATGCTGCAGCGAGACGAATGCCGGGATTTCCGCGCAGGCGCATATGT
GCAGGAGGACTTTGATAGTCTGTTCTCAGTACCAAGTTGTGATGACCTGT
TCAGGAACGGCACCATCCAACCAGACCAGGTCATCGATACGCATATGACG
CACTTCAGCAATAACCCTTATCAGTGGGCTACTAACATAAGTCTGGAGGA
TACCGTTGTATCATTGGAGTTCACATCTGAAGGCCAGAATATCGCTGTAC
GGAACCTAACAGAAGCAGTTGACATCATCCTGCCTCGGGACGATAGCTCC
GAGTTCTGGAACACGGTTCGGATATCAGGGGATGGTACCCAGGAGGACAA
AAAACAGCTGCGGAAAGGTGCCATTACCAGTTTGAATAGGATCCCGATTC
AAACACTGGACGGTCTGCATCAAACTGCTACCGCCATGGCTCAACTTACC
AAAGAGGACACCGAGCTCTCGGGGGACGCACAGGATCTGGCTGTATCGAA
ACTTACAAAAATGACGACATTTCTGAAGGAAAAAATGGAGGATGGAACAG
CAAGCGTTCAGGTAGTAGAGCTTACCACACAGGCTCTAATATCCGGCCTG
GCTAATGTCGTCAAAGCAGCTGCCAGGAGAACCTCAACAGCTCATGACCA
CTTCACGCCAAAGGTGTTCCCGTGGTCCTCCACTGTCATACAACAGTCGC
TGCAGACGATATCTACCGTCAAACAAACTGTTCTTACCACGATAGCCCCT
GGGGAGAAACCCAAGGTACTGACCACCCCAAGCCTCGCTATCATGCTGCA
GCGAGACGAATGCCGGGATTTCCGCGCAGGCGCATATGTGCAGGAGGACT
TTGATAGTCTGTTCTCAGTACCAAGTTGTGATGACCTGTTCAGGAACGGC
ACCATCCAACCAGACCAGGTCATCGATACGCATATGACGCACTTCAGCAA
TAACCCTTATCAGTGGGCTACTAACATAAGTCTGGAGGATACCGTTGTAT
CATTGGAGTTCACATCTGAAGGCCAGAATATCGCTGTACGGAACCTAACA
GAAGCAGTTGACATCATCCTGCCTCGGGACGATAGCTCCGAGTTCTGGAA
CACGGTTCGGATATCAGGGGATGGTACCCAGGAGGACAAAAAACAGCTGC
GGAAAGGTGCCATTACCAGTTTGAATAGGATCCCGATTCAAACACTGGAC
GGTCTGCATCAAACTGCTACCGCCATGGCTCAACTTACCAAAGAGGACAC
CGAGCTCTCGGGGGACGCACAGGATCTGGCTGTATCGAAACTTACAAAAA
TGACGACATTTCTGAAGGAAAAAATGGAGGATGGAACAGCAAGCGTTCAG
GTAGTAGAGCTTACCACACAGGCTCTAATATCCGGCCTGGCTAATGTCGT
CAAAGCAGCTGCCAGGAGAACCTCAACAGCTCATGACCACTTCACGCCAA
AGGTGTTCCCGTGGTCCTCCACTGTCATACAACAGTCGCTGCAGACGATA
TCTACCGTCAAACAAACTGTTCTTACCACGATAGCCCCTGGGGAGAAACC
CAAGGTACTGACCACCCCAAGCCTCGCTATCATGCTGCAGCGAGACGAAT
GCCGGGATTTCCGCGCAGGCGCATATGTGCAGGAGGACTTTGATAGTCTG
TTCTCAGTACCAAGTTGTGATGACCTGTTCAGGAACGGCACCATCCAACC
AGACCAGGTCATCGATACGCATATGACGCACTTCAGCAATAACCCTTATC
AGTGGGCTACTAACATAAGTCTGGAGGATACCGTTGTATCATTGGAGTTC
ACATCTGAAGGCCAGAATATCGCTGTACGGAACCTAACAGAAGCAGTTGA
CATCATCCTGCCTCGGGACGATAGCTCCGAGTTCTGGAACACGGTTCGGA
TATCAGGGGATGGTACCCAGGAGGACAAAAAACAGCTGCGGAAAGGTGCC
ATTACCAGTTTGAATAGGATCCCGATTCAAACACTGGACGGTCTGCATCA
AACTGCTACCGCCATGGCTCAACTTACCAAAGAGGACACCGAGCTCTCGG
GGGACGCACAGGATCTGGCTGTATCGAAACTTACAAAAATGACGACATTT
CTGAAGGAAAAAATGGAGGATGGAACAGCAAGCGTTCAGGTAGTAGAGCT
TACCACACAGGCTCTAATATCCGGCCTGGCTAATGTCGTCAAAGCAGCTG
CCAGGAGAACCTCAACAGCTCATGACCACTTCACGCCAAAGGTGTTCCCG
TGGTCCTCCACTGTCATACAACAGTCGCTGCAGACGATATCTACCGTCAA
ACAAACTGTTCTTACCACGATAGCCCCTGGGGAGAAACCCAAGGTACTGA
CCACCCCAAGCCTCGCTATCATGCTGCAGCGAGACGAATGCCGGGATTTC
CGCGCAGGCGCATATGTGCAGGAGGACTTTGATAGTCTGTTCTCAGTACC
AAGTTGTGATGACCTGTTCAGGAACGGCACCATCCAACCAGACCAGGTCA
TCGATACGCATATGACGCACTTCAGCAATAACCCTTATCAGTGGGCTACT
AACATAAGTCTGGAGGATACCGTTGTATCATTGGAGTTCACATCTGAAGG
CCAGAATATCGCTGTACGGAACCTAACAGAAGCAGTTGACATCATCCTGC
CTCGGGACGATAGCTCCGAGTTCTGGAACACGGTTCGGATATCAGGGGAT
GGTACCCAGGAGGACAAAAAACAGCTGCGGAAAGGTGCCATTACCAGTTT
GAATAGGATCCCGATTCAAACACTGGACGGTCTGCATCAAACTGCTACCG
CCATGGCTCAACTTACCAAAGAGGACACCGAGCTCTCGGGGGACGCACAG
GATCTGGCTGTATCGAAACTTACAAAAATGACGACATTTCTGAAGGAAAA
AATGGAGGATGGAACAGCAAGCGTTCAGGTAGTAGAGCTTACCACACAGG
CTCTAATATCCGGCCTGGCTAATGTCGTCAAAGCAGCTGCCAGGAGAACC
TCAACAGCTCATGACCACTTCACGCCAAAGGTGTTCCCGTGGTCCTCCAC
TGTCATACAACAGTCGCTGCAGACGATATCTACCGTCAAACAAACTGTTC
TTACCACGATAGCCCCTGGGGAGAAACCCAAGGTACTGACCACCCCAAGC
CTCGCTATCATGCTGCAGCGAGACGAATGCCGGGATTTCCGCGCAGGCGC
ATATGTGCAGGAGGACTTTGATAGTCTGTTCTCAGTACCAAGTTGTGATG
ACCTGTTCAGGAACGGCACCATCCAACCAGACCAGGTCATCGATACGCAT
ATGACGCACTTCAGCAATAACCCTTATCAGTGGGCTACTAACATAAGTCT
GGAGGATACCGTTGTATCATTGGAGTTCACATCTGAAGGCCAGAATATCG
CTGTACGGAACCTAACAGAAGCAGTTGACATCATCCTGCCTCGGGACGAT
AGCTCCGAGTTCTGGAACACGGTTCGGATATCAGGGGATGGTACC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97084gene:BL97084Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97084_cuf6transcript:BL97084_cuf6-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97084_cuf6-E1BL97084_cuf6-E1-1564476830-31422Branchiostoma lanceolatumexon
BL97084_cuf6-E2BL97084_cuf6-E2-1564476830-31424Branchiostoma lanceolatumexon
BL97084_cuf6-E3BL97084_cuf6-E3-1564476830-31426Branchiostoma lanceolatumexon
BL97084_cuf6-E4BL97084_cuf6-E4-1564476830-31428Branchiostoma lanceolatumexon
BL97084_cuf6-E5BL97084_cuf6-E5-1564476830-31430Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:9625642..9627741 +
Properties
Property NameValue
Transcript idBL97084_cuf6
Biotypeprotein_coding