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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97011_cuf3 >transcript:BL97011_cuf3-protein ID=transcript:BL97011_cuf3-protein|Name=transcript:BL97011_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=352bp
TWGDLHYLSFDGNHLDFDGNCSYTLVQDTNDRPMFNIQLQRGYVEDDMSL
SPSAIPNQGNVSSSSNASKAPSTRVHVNVYGHKITLVKGRQLMVNQVQMS
TPLVVGRYIHVNQSGDHIVVTTDFGLRVSYDGEQEVMVSLPGCFANRTSG
LCGNYNGDAGDDNRTADGMAASSDAAFVNSWQMKNDSCPPLAEFSFPMCQ
NMSAYLPNNTTNTTNFNMTAMPCHFFMLEINKCSKVVSPRLFFRACVQEH
CALKRGQDRICQTYEAYSHECARRGVILNWRNENFCPKTCPANSNYTACM
SACPATCGDPDAQKQCFVNTGQQFCVEGCRCKKGYVLSGSECILKEQCGC
TK Run BLAST on NCBI mRNA from alignment at Sc0000025:1323101..1328504+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97011_cuf3 ID=transcript:BL97011_cuf3|Name=transcript:BL97011_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=5404bp|location=Sequence derived from alignment at Sc0000025:1323101..1328504+ (Branchiostoma lanceolatum)
GACCTGGGGAGACCTTCACTACCTCAGCTTTGACGGAAACCATCTGGACT
TTGATGGGAACTGCTCCTACACTCTTGTACAAGACACCAACGACAGACCG
ATGTTTAACATCCAGCTGCAGCGTGGATACGTGGAAGACGACATGTCGCT
CAGTCCCAGCGCGATACCAAATCAAGGAAACGTGTCTTCAAGTTCAAACG
CTTCCAAAGCACCGAGCACCAGAGTGCACGTGAACGTGTATGGGCATAAG
ATTACTCTTGTGAAGGGGCGTCAGCTGATGGTATGTTCCTATGGTTTCTA
CTGTCAATCATTCTGAGATGACTATTGATGAAGTAGTTTAGTTTTTTTCA
GTTTCACAAGCCAATCAAAATGTTCAATTTTCTTTGATCCTCAAATTGGG
AATTTGAAGACTTTTAGGACAGAATTCTGAACTTGAAAAAGATTCATTAA
TCCTTTAAATCAAATGTTTGAAATACTTAAAGGTTAAAAACACTTAAAGG
ATGATAATTTACTACTATTAACAAAAAATCTTAAGATCACTGTAACAGTA
TGTTTTTTTTCAAATAATGTAAATAAAGTGAATGGCACATGGGTGCATCA
CCTGATCTTGGAAGAATCTCATTGTTTAAAAAATATGTTGCAGTTTTTCA
AACTGACCTTCTAACTTGAATATATTTCTGCTGTTTCAGGTGAATCAGGT
GCAGATGAGCACACCTCTTGTGGTGGGACGGTACATCCATGTCAATCAAA
GTGGCGACCACATCGTAGTCACCACGGACTTTGGGTTGAGGGTCAGCTAC
GATGGCGAGCAAGAGGTCATGGTATCCCTCCCAGGGTGCTTTGCAAACAG
GACGTCCGGGCTCTGTGGGAACTACAATGGTGATGCGGGTGACGATAACC
GTACGGCTGATGGCATGGCGGCTTCGTCAGATGCCGCGTTTGTTAACAGC
TGGCAGATGAAGAATGACAGGTGGGTATCTTCAGCAACAATTTCAAGTCT
TAATTCAAATTTTGTTTATTGTTTATTTGCATATATGTACAATTATAAAA
AGATAAACAAGGCAAAAAGAAAACATGCAGGGGGGCAGAAGCCTAGGTGG
CTTTTCATGGGCCTCCCCTAAACTACACAATGGGAATTTTTACAAGATTA
TACATAATCAAAACTTAGCAAAATCTTAGCAAAATTAAAGAAAGAACAAA
CTGCAATTGTACCATAAATCCTAATGAAACAAATGAAAAAAAAAGAGGAA
ATACAAAATAAATTGAGTTGATTACACTTTAAATTCTATATTTTAAAAGA
GACACCTTATAAAGATCTGAACTGAATTGAATTTTTTCTCTTTTTATGGT
GAAAAATCAAACAATGTACATTGTACCTGTTAAGTGCATGGAAGGGGGCT
AAATTTAAAATTGAAAAAAGCATAGTGTGACTATTATGCTAAATACACCC
CAAAGTCAAGTTCTCACTTGTTTAACACACCTCCATCATAGTTCAGAGCT
CTCCCACCATTTGCAACTCACAACCTTCAACTATGTACATGTACCTACAT
TCTGAAATGTGTTTTTTTATCCACAGTTGTCCACCATTGGCAGAGTTTTC
CTTCCCGATGTGTCAGAACATGTCTGCCTACCTTCCCAACAACACTACAA
ACACTACAAACTTCAACATGACTGCCATGCCCTGCCATTTCTTCATGTTG
GAGATCAACAAGTGTTCCAAGGTTGTGTCCCCCCGGTTGTTCTTCCGCGC
CTGCGTACAGGAGCACTGTGCGCTGAAACGCGGTCAGGATCGGATCTGTC
AGACGTACGAGGCTTACAGTCACGAGTGCGCGAGACGGGGAGTCATTCTG
AACTGGAGAAATGAGAACTTCTGTCGTGAGTACTTCATCATATGTCCAAT
ATTGAATAGGGAAGAATGATACCTTATGTTCACTGAATAGAATGTTGATC
GCTCCTTTTACTTCACAAAGGTTGGAATGATATAAAGGGAATGAATCTTA
AGCAGGGCCTGGGTCTTCATCGTGGGTCACTGCACATGCATATGGCTAAA
GCTGTCTTCATCGTAGGTCATGGAATATGGCTGAAGCTGTGGGCCTTGGT
CTTGATTGATGGAGGTCACTGCGTATGGTGCAAGCTTGCCATTTTCCCCT
TTCCCTGACACATCAACATAAGTCACTGCATATGGCTGGTCGTCGTCGTT
GTGTTCTGATGCCTGGATGTGAGCAAAGGAAGTCGTTGCATACGGCGCCA
GCTTGCCATTTTTCCCTTTCCCTGACACATCCATGTATGACACAGCGTAC
GGCTCAATGTCATCATTGTCCTCTGATGTCTGGTCCTGAACAGGGGTTGG
CCGTCTCCCTGTGGCTGTGTCTCTGTCTGATGTTCCTAGTCTGGCCAAGT
TTGAGTGGACAACACCATACGGCTCAATGTTATCGCTTCCATCTGTTTCA
GCAGGTGCGTTGTGACAGGCCAAACCTGTGCCACGACAGCGGTTGTACAA
ACAGATGACAACTACCGATGCCAACACAATCAGGAGGGGCACAACAGCAG
CAGTGATGATGATTTTGACATGGCGACTGTCATCATTCTCAGTGATGATC
GGGCCACTGAGAAGAAGGACAATGTCAGTCCCTGTCGTATACTCTATGTC
AGGCATGTTGTTTGTGTATGGCATCTCTGTGGGAGTGGCGTTGTTGTACA
GACTCGTGTTGAAGGTACGAGGAGCTGTTGTGATGGACGTGATACCCTGT
CGTGACCCGTCCGTGACAGTCTGACAGATATCCTTCCTCATGGTGGTAAG
GAGAATTCCACTCAGGTCAGCAGGTGATGCACACCTCAGGATGTTCCGAC
CAGAAATGTGGTCCAGGTCTGGTGGGTTGCAGATGAACCACGTTAGATTC
CCGTCACAGTTCAGCTTGTTGCCCGTTATCACGAGACTCAAGTTCTGATT
TTGACTTAGACGCAGAACTTGGCTGTCGATTATTGTGATGTGGTTTCTTT
CCAGGTTTGCAACCTTCAGTGCTTTAGGTGGCAGGAGTGCATCAACAGGC
ACGGAACACAGGCGGTTCTTTGTCAACTGCAACCAGGCAAGGCAAGGCAG
GCCACGGAATGCATGCTGGGATATGGCAGAAATGGCATTCTTTTGAAGGT
TCAAGTAAACTACCTGCTCAAGCCCCTTGAAGATATCAGGTTCTGAGGAT
GAAAAAAAAGAACATTAAAAAAACTTTATCATCACAGTCCAGGCCTCGAA
ATAGTGGGTGCATGTTGGAGTCTGGTCTGTGCACCTAATTCTTGACTGTG
GGTGCACCAGTGCAGCCAAACATTTTTGTATGCAATAGGGTAAAGGTACT
ATTGTGCACTAATATACAGAATATTCTTGATATGTAAGTGTCAGAAAAAG
CACTATAACCTTTTGTTGTACTTCAGCTGATGTACTACTTGTTTGTAATT
AGCTAGCTTTAGAATGACAGATTGAAGTTCTCAAGAGCTTTAGATTTAAG
TATGTTTTGCTGACATTCAACTTTATCTTATGTGGTGGACCTTAAATTCT
TTCTGTGCACCTAATTTTTTGGGCTGGGTGCACCAGTGCACCTTTTTCTA
GAAATGAATTTCGAGCCAGAAGAATGCCAAACCATTCATATGTATGTGAG
GGACACTTTTCGCCATGTTAGTGGTGTGACTTTTAGAAAATACTGAAACT
TTAACAAAGTGGGTTAACATCATAGATTGATTTGACTCACAAATAGGGAA
ATTTGCACCAAATTTGTTTGAACACACCTATGGTGCATTCATTTGCATCT
ACTTTGCATGTTTACACTTCTTGCGGAATGTATAAAACATTAAAATGCAC
CAAAAACCTGTTAAGCCTCCCTTTTAAGGTAATACATTTATGTAAATTGA
TGTGAAAATCCTAAATCACAGTGTGTCATCGCTACATACATAAAATGCAG
TCATGTAATTCCGTTTTAAAGTGAGTACACATGTATTGAAATCACTAATG
TGAACGTACCAAGACTGGAGATACGGTTGTCAGCAAGGGTGACGGCGCGC
ACCAATGGGAGGCCTCGGAAAGCCCCCGGCTGTACCATGGAAACATTTGA
CTCTCGGATGTAAAGGAACTTCACTTCTGTGCTGTTGGGGAAAGACCACT
CCGGAATCGTAGAAGAACGGAGATGCTTGATGTAGATTGTTTGTGTGGCT
TTGTCGAAGCCGGTAGGTATGGCGTCGAGACATACGGGGAAGCTGTACGT
TCCTCCGTGTCCAACCCAGCTGCAGGCGGACCCTGCCCAATTTGCATCTG
GACAATGACAGATGAGTCGCTTTTGACCCGCCCTGTTCTTTCCAACTACG
CCGGGACAACAGCTGTCTGGACACCGAAGATCTTCATGTACATGCGCTGT
TGCCGACATAAGCAGCAGATAACTTGACACCAGGAGTAACCACCAAAGCA
GTGCCTTGTTTTCCGCCATCTTGTCTACTGATATGAGGGTTGAAATGAAT
TGTTTGGTTGTAATAAAATTCATACATTCGATTTGTCCCTTTAGTCAGGA
AATTGGATCCATATGTTTTCAATTTCCCCAGTAGTTTGAATTACAAATTT
CTAACATAATTATGTCGAATTGATTTTTCAATCTCAGAACCTGTGAGACT
CATTTTCTCTATAGTTTTGCATATGAAGAAAATTGCAATCATGCCTGATA
AGATTTGATTTCTATGAACACTGCCAATTCATTAAAACTAAAAGAAAAAA
CAACCAGTAGCCCTAAGAATAGAATGTAAACCCATCTGCAGCAAGACAGC
AGGCTAAATACTACTAGAAAATAGCAATGATTTTAAGGGCCACATTTGCA
GCCCATGTAAAAATGGACTATCTCAAACTAGCTTTTTGCAGAAATATTCA
TTCAATGCATAAATAAATAGATAAATCTCTGAAGAAAAACCCCCCCCCCC
CCACACACACACACGTTTAACAGTCTCCAAGTCCATAACAATTATAGAGA
TATGGATATTTTCATGTTGGCAGTTCTCTCTCTTCCTGACAGGTTGCAAT
GCAGGTGAACAAACAGTTGCAATGATAGTTTCACAATGCCTTCCTTTGTT
TGTATATCTGCCTTTATATGTGAGAAAATGGGTTGAAGAAAATGAACAGC
CCTTTTAATTATATTGCTCTGGATATCTCATCTTGTGTTAATATTTCACA
ATGTAGCAAAAACATGTCCAGCCAATAGTAACTACACAGCGTGCATGTCG
GCCTGCCCTGCTACATGTGGCGACCCTGACGCACAGAAACAGTGTTTCGT
CAACACTGGTCAGCAGTTCTGCGTGGAAGGATGTCGCTGTAAGAAAGGCT
ATGTCTTGAGTGGAAGCGAATGCATCTTGAAGGAGCAATGTGGCTGCACC
AAGG Coding sequence (CDS) from alignment at Sc0000025:1323101..1328504+ >transcript:BL97011_cuf3 ID=transcript:BL97011_cuf3|Name=transcript:BL97011_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=4224bp|location=Sequence derived from alignment at Sc0000025:1323101..1328504+ (Branchiostoma lanceolatum)
ACCTGGGGAGACCTTCACTACCTCAGCTTTGACGGAAACCATCTGGACTT
TGATGGGAACTGCTCCTACACTCTTGTACAAGACACCAACGACAGACCGA
TGTTTAACATCCAGCTGCAGCGTGGATACGTGGAAGACGACATGTCGCTC
AGTCCCAGCGCGATACCAAATCAAGGAAACGTGTCTTCAAGTTCAAACGC
TTCCAAAGCACCGAGCACCAGAGTGCACGTGAACGTGTATGGGCATAAGA
TTACTCTTGTGAAGGGGCGTCAGCTGATGGTGAATCAGGTGCAGATGAGC
ACACCTCTTGTGGTGGGACGGTACATCCATGTCAATCAAAGTGGCGACCA
CATCGTAGTCACCACGGACTTTGGGTTGAGGGTCAGCTACGATGGCGAGC
AAGAGGTCATGGTATCCCTCCCAGGGTGCTTTGCAAACAGGACGTCCGGG
CTCTGTGGGAACTACAATGGTGATGCGGGTGACGATAACCGTACGGCTGA
TGGCATGGCGGCTTCGTCAGATGCCGCGTTTGTTAACAGCTGGCAGATGA
AGAATGACAGTTGTCCACCATTGGCAGAGTTTTCCTTCCCGATGTGTCAG
AACATGTCTGCCTACCTTCCCAACAACACTACAAACACTACAAACTTCAA
CATGACTGCCATGCCCTGCCATTTCTTCATGTTGGAGATCAACAAGTGTT
CCAAGGTTGTGTCCCCCCGGTTGTTCTTCCGCGCCTGCGTACAGGAGCAC
TGTGCGCTGAAACGCGGTCAGGATCGGATCTGTCAGACGTACGAGGCTTA
CAGTCACGAGTGCGCGAGACGGGGAGTCATTCTGAACTGGAGAAATGAGA
ACTTCTGTCCAAAAACATGTCCAGCCAATAGTAACTACACAGCGTGCATG
TCGGCCTGCCCTGCTACATGTGGCGACCCTGACGCACAGAAACAGTGTTT
CGTCAACACTGGTCAGCAGTTCTGCGTGGAAGGATGTCGCTGTAAGAAAG
GCTATGTCTTGAGTGGAAGCGAATGCATCTTGAAGGAGCAATGTGGCTGC
ACCAAGACCTGGGGAGACCTTCACTACCTCAGCTTTGACGGAAACCATCT
GGACTTTGATGGGAACTGCTCCTACACTCTTGTACAAGACACCAACGACA
GACCGATGTTTAACATCCAGCTGCAGCGTGGATACGTGGAAGACGACATG
TCGCTCAGTCCCAGCGCGATACCAAATCAAGGAAACGTGTCTTCAAGTTC
AAACGCTTCCAAAGCACCGAGCACCAGAGTGCACGTGAACGTGTATGGGC
ATAAGATTACTCTTGTGAAGGGGCGTCAGCTGATGGTGAATCAGGTGCAG
ATGAGCACACCTCTTGTGGTGGGACGGTACATCCATGTCAATCAAAGTGG
CGACCACATCGTAGTCACCACGGACTTTGGGTTGAGGGTCAGCTACGATG
GCGAGCAAGAGGTCATGGTATCCCTCCCAGGGTGCTTTGCAAACAGGACG
TCCGGGCTCTGTGGGAACTACAATGGTGATGCGGGTGACGATAACCGTAC
GGCTGATGGCATGGCGGCTTCGTCAGATGCCGCGTTTGTTAACAGCTGGC
AGATGAAGAATGACAGTTGTCCACCATTGGCAGAGTTTTCCTTCCCGATG
TGTCAGAACATGTCTGCCTACCTTCCCAACAACACTACAAACACTACAAA
CTTCAACATGACTGCCATGCCCTGCCATTTCTTCATGTTGGAGATCAACA
AGTGTTCCAAGGTTGTGTCCCCCCGGTTGTTCTTCCGCGCCTGCGTACAG
GAGCACTGTGCGCTGAAACGCGGTCAGGATCGGATCTGTCAGACGTACGA
GGCTTACAGTCACGAGTGCGCGAGACGGGGAGTCATTCTGAACTGGAGAA
ATGAGAACTTCTGTCCAAAAACATGTCCAGCCAATAGTAACTACACAGCG
TGCATGTCGGCCTGCCCTGCTACATGTGGCGACCCTGACGCACAGAAACA
GTGTTTCGTCAACACTGGTCAGCAGTTCTGCGTGGAAGGATGTCGCTGTA
AGAAAGGCTATGTCTTGAGTGGAAGCGAATGCATCTTGAAGGAGCAATGT
GGCTGCACCAAGACCTGGGGAGACCTTCACTACCTCAGCTTTGACGGAAA
CCATCTGGACTTTGATGGGAACTGCTCCTACACTCTTGTACAAGACACCA
ACGACAGACCGATGTTTAACATCCAGCTGCAGCGTGGATACGTGGAAGAC
GACATGTCGCTCAGTCCCAGCGCGATACCAAATCAAGGAAACGTGTCTTC
AAGTTCAAACGCTTCCAAAGCACCGAGCACCAGAGTGCACGTGAACGTGT
ATGGGCATAAGATTACTCTTGTGAAGGGGCGTCAGCTGATGGTGAATCAG
GTGCAGATGAGCACACCTCTTGTGGTGGGACGGTACATCCATGTCAATCA
AAGTGGCGACCACATCGTAGTCACCACGGACTTTGGGTTGAGGGTCAGCT
ACGATGGCGAGCAAGAGGTCATGGTATCCCTCCCAGGGTGCTTTGCAAAC
AGGACGTCCGGGCTCTGTGGGAACTACAATGGTGATGCGGGTGACGATAA
CCGTACGGCTGATGGCATGGCGGCTTCGTCAGATGCCGCGTTTGTTAACA
GCTGGCAGATGAAGAATGACAGTTGTCCACCATTGGCAGAGTTTTCCTTC
CCGATGTGTCAGAACATGTCTGCCTACCTTCCCAACAACACTACAAACAC
TACAAACTTCAACATGACTGCCATGCCCTGCCATTTCTTCATGTTGGAGA
TCAACAAGTGTTCCAAGGTTGTGTCCCCCCGGTTGTTCTTCCGCGCCTGC
GTACAGGAGCACTGTGCGCTGAAACGCGGTCAGGATCGGATCTGTCAGAC
GTACGAGGCTTACAGTCACGAGTGCGCGAGACGGGGAGTCATTCTGAACT
GGAGAAATGAGAACTTCTGTCCAAAAACATGTCCAGCCAATAGTAACTAC
ACAGCGTGCATGTCGGCCTGCCCTGCTACATGTGGCGACCCTGACGCACA
GAAACAGTGTTTCGTCAACACTGGTCAGCAGTTCTGCGTGGAAGGATGTC
GCTGTAAGAAAGGCTATGTCTTGAGTGGAAGCGAATGCATCTTGAAGGAG
CAATGTGGCTGCACCAAGACCTGGGGAGACCTTCACTACCTCAGCTTTGA
CGGAAACCATCTGGACTTTGATGGGAACTGCTCCTACACTCTTGTACAAG
ACACCAACGACAGACCGATGTTTAACATCCAGCTGCAGCGTGGATACGTG
GAAGACGACATGTCGCTCAGTCCCAGCGCGATACCAAATCAAGGAAACGT
GTCTTCAAGTTCAAACGCTTCCAAAGCACCGAGCACCAGAGTGCACGTGA
ACGTGTATGGGCATAAGATTACTCTTGTGAAGGGGCGTCAGCTGATGGTG
AATCAGGTGCAGATGAGCACACCTCTTGTGGTGGGACGGTACATCCATGT
CAATCAAAGTGGCGACCACATCGTAGTCACCACGGACTTTGGGTTGAGGG
TCAGCTACGATGGCGAGCAAGAGGTCATGGTATCCCTCCCAGGGTGCTTT
GCAAACAGGACGTCCGGGCTCTGTGGGAACTACAATGGTGATGCGGGTGA
CGATAACCGTACGGCTGATGGCATGGCGGCTTCGTCAGATGCCGCGTTTG
TTAACAGCTGGCAGATGAAGAATGACAGTTGTCCACCATTGGCAGAGTTT
TCCTTCCCGATGTGTCAGAACATGTCTGCCTACCTTCCCAACAACACTAC
AAACACTACAAACTTCAACATGACTGCCATGCCCTGCCATTTCTTCATGT
TGGAGATCAACAAGTGTTCCAAGGTTGTGTCCCCCCGGTTGTTCTTCCGC
GCCTGCGTACAGGAGCACTGTGCGCTGAAACGCGGTCAGGATCGGATCTG
TCAGACGTACGAGGCTTACAGTCACGAGTGCGCGAGACGGGGAGTCATTC
TGAACTGGAGAAATGAGAACTTCTGTCCAAAAACATGTCCAGCCAATAGT
AACTACACAGCGTGCATGTCGGCCTGCCCTGCTACATGTGGCGACCCTGA
CGCACAGAAACAGTGTTTCGTCAACACTGGTCAGCAGTTCTGCGTGGAAG
GATGTCGCTGTAAGAAAGGCTATGTCTTGAGTGGAAGCGAATGCATCTTG
AAGGAGCAATGTGGCTGCACCAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000025 | genome | Sc0000025:1323101..1328504 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97011_cuf3 |
| Biotype | protein_coding |
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