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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96961_cuf0 >transcript:BL96961_cuf0-protein ID=transcript:BL96961_cuf0-protein|Name=transcript:BL96961_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=323bp
MAAEPSELRRVEDFRRVAERTLSDAAWGYYSNGDGDNQTLRDNCESFKRY
RVLPRVLRDVSTIDTSVTVLGSTLDFPVAISPTAHHKMAHSDGEKATARA
AASANTGMALSLFANHSLEDVAEAAPQGTRWFNFVLFKDPKRNRELLDRA
AKAGYKAVFLTVDQPRFEYLKRITTSKGKDKTHTFYSTPNLVFPGTPPYG
TEEYRSHLYSALKQPMTWDDVDWVKKNTSLPVVLKGILTAADAQEAVRHG
ADAILVSNHGGRQLDGVPATIDVLADIVRAVGGEAEVYLDGGVRTGTDVL
KALAMGARCVFIGRPALWGLACN Run BLAST on NCBI mRNA from alignment at Sc0000044:1352267..1356088+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96961_cuf0 ID=transcript:BL96961_cuf0|Name=transcript:BL96961_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3822bp|location=Sequence derived from alignment at Sc0000044:1352267..1356088+ (Branchiostoma lanceolatum)
GGAAGGGCTAGACCAAATATAACTGAGACACAAAATACGTCCTTATATTT
TATCATTGTGTGGGGGATAGGCGCAGGCACATTGTAAAGGGGTTTGACCT
TGCACGATAAACCAAGATGGCGGCCGAACCGTCCGAACTGCGGAGGGTGG
AAGATTTCCGAAGAGTCGCTGAGCGAACCCTGTCTGACGCCGCCTGGGGA
TACTACAGCAACGGGGACGGCGACAACCAGACTCTGAGGGACAACTGTGA
GAGCTTTAAAAGGTAGTCATTCTATTTCAGACTGTATAAACAATCTTCTT
CGTGTGTTTATGAAGGTTAGACATCCGGTAGCCTGTCACTGTTGACACAA
AACTCTCGCTGGCTGGGGTTAATGACCTTTCCCCCAAGGGGGCGGTAACC
ATCGGTCCGGCCGCTAGGGGCGCAGTATGTACAGTTAGGCTAGACATCCA
AATAAACAATATTCAAATACAGATTATTGTCTACAACTGGAACAACTGGA
TAAGACATATAGAGATTTTACTTCCGGACGTCACCGGCCATATGTTACTT
TAGTGATATTTACATGCCTTGCATACCACGATTGTGAGTTAATGACTTTG
ACATGCTCAACGGGTATTTACATTTAGAGTTAGTTGTCATATGCCAGGTC
ATTCTAATGACTTAATCTCTGTATCTTATAAAGTTGTATAGATTGATAAA
AACCGTTGATTTTTTCATATCTAGATATGTTGTGTTTTAGTTTGTCCTTT
GTCTTCTTCTTTCCTTGTAATTGTATTCATACCGGGTGATTCACAGAAAC
TCGTCCCTGGCAAACGCGTAAACCAAGGAGAGGGCGATCAACACTCCAAA
TAATACCAGAATAGATAACATGAAAGATATACAAGTCGAGGTTAAGTTTG
CGCCGTGTCTGATCAAGTAGCCTTGACTAATTAAGATGTTAGCCCCGTTT
TTTGTTCAGTAGGTGCCGTGTGTTTAGCCTGGCTTCAACCAAGCCCCGTG
TCCGCTCGCCGCCAGTAACGGCTATCCACCCACGGGGAGGGGAGAGAAAC
CCCCGGACAGCTGGAGTTTGCGTTACACAGACTACCGTATGTTACCGTCG
GATGTTACGTGACGTGTCCATCGTAGACACTTCAGTGACAATCTTAGGCA
GAACGCTAACAGTACAGTCTGTCTGCCTGTCTGTCTGTCTGGCTGTAGGT
ACTGTGTGCTACCGCGGGTTTTACGTGACGTGTCCACCATAGACACCACA
GTGACAGTGCTAGGCGGAACGCTAACAGTACAGTCTGTCTGTCCGTCTGT
CTGTCTGTCTGTAGGTACCGTGTGTTACCGCGGGTGTTACGTGACGTGTC
CACCATAGACACCTCTGTGACAGTGCTGGGCAGCACGTTGGACTTCCCTG
TCGCCATCTCCCCCACAGCTCATCACAAGATGGCGCACTCGGACGGAGAG
AAGGCCACAGCTAGAGGTAAGTGCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCNAGATAAATTTGACAGCTCAGGTGACCATAAGAGC
TACGTTTGACACGTAATACTAAATGTCTATCCTGGCACATTGGCAAGTCT
GCCGTGTGTGTATTTGTACGTCTGTGTGTGTGTGTGTGCGTGCGTGTGTG
TATGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTG
TGTGCGCGTGTATATGTATGTAAATGTAAATATGTGTGTGTGTTTTCTAT
AGTGATGCATTGCCCTTATACGATACAATATAGCATATATTAAACACTGT
GTTCCTTAAGTAACCGACAAGTTTTTCTTTAGCCGCAGCCTCAGCCAACA
CCGGGATGGCGCTCAGCTTATTTGCAAACCACTCCTTGGAAGACGTCGCA
GAAGCTGCGCCTCAAGGAACCCGCTGGTTCAACTTTGTGCTATTCAAGGA
CCCGAAACGGAACAGGGAGCTGTTAGACAGAGCAGCGAAGGCGGGCTACA
AGGCAGTCTTCCTCACAGTCGACCAGCCAAGATTCGAGTACCTAAAGCGA
ATAACGACCAGCAAGGGAAAGGACAAGACACATACGTTCTACAGGTAAAT
CTTCAAATTCTGCATTGGTCCAGCTAGGACAAGCTCTATATGTAAACAAA
GAAGCGACCACTCAAGGCGTCACTAAAAAAGCGGTCACAGAAAGATGCAA
ACCCCAACTGCAATTACACATACATTAGGGAGACGTCGATCAGGGCGCAG
AGAATATTGCAGTGAGAGCGCTAACGAATATTCCTCGGCCATTTACCACC
ATCTACAACACAACCAGGGCCTAGGGACACTCATTCAATTTCGAATCCAC
AGATATCTGATTTAATTTTCAGCACCCCAAACCTGGTGTTTCCAGGCACG
CCACCTTACGGGACGGAAGAGTACCGCAGTCACCTCTACTCAGCACTGAA
GCAGCCTATGACGTGGGATGACGTAGACTGGGTGAAAAAGAACACATCAT
TGCCGGTCGTCCTCAAAGGAATCCTTACAGGTAAAAACTATATAGTTCAC
AAGTCATGCTTGTCTTGAGCATTGATGTTTCTGACCTAGGGTGAAGAGAT
GCTGCTACAGTAACAATTGAGCCGCCTTTCTTCGTAAATCGATGGCAACA
TCAGGCATCAGATGAATTGATTTTTTTTTTTTTTTAAAAGAAGGAAAAAA
TTGCCACAGCGTTACTCCTAAGTAGAGACGGGGGACGGTACAGACTTTCT
GTGACCTGGTGAAGGTCACGTATCCACGAAGCCACGTGTCAAAGTAGCGA
GTCATTCTTTCCTGATGATTGAAGGGACATTCGACCTACCTTTCAAGTTC
TTTTTCTTTTTTGTTGACCCATAGGACTGGTTTAAATTATTCTTCTTTCA
AATCATAAGAGAATCTTGGGTTTAATGTAGTTATTTTTTTCTTTTCTTTT
TCAGCGGCGGATGCCCAGGAAGCTGTTCGTCACGGCGCTGACGCCATCTT
GGTGTCCAACCACGGCGGCAGGCAGCTGGACGGGGTCCCTGCTACTGTGA
GGGTTATTTTTGCGACGCCTCAAGAGCGGGGCCTTGTTACGCTATACGGT
TCAAGCCTAGCGCTGCACTAGCCTCAACCTGTGTTTGGTGTATGTGATTG
TGATTTTTTTTGGCGACACCTCTTGCGCGGGGCCTTGTTATTCTACACGG
TGTAACTATAGCGCCACACTAGCCTTAATCTGAGTGGGGTGCCTACTACT
GTGAGTTTTTGAGGACACCTCAGGAGCGAAGCCTTAGCTATGCGACGTGC
TGTAGTTCTTGAGCTACACTATGCGCTGCTTGTTGCTTGTGGAGCTGATG
TGTTAAGTATAACCTTGCACTAACATTAAGCCTTACCCAGGCAAGGAATA
GGCTAGATGGGCCAGATTCTTGCTATTGCACGTCTGCTGGTTCTTCGTCT
AAAATCATATCATGAGTCTATACAATGTTCTATTGAATGACTTGATTCTA
CTTGAAACATTTTTTACCACAAAAGGCCGACCACCTAGAAGTTAAATAGA
GTATAAGTCATTAAGAACCATTGATAATTGTTTTGCAAAACTTTTTTTAA
TGTTTCAACAGATTGACGTCCTTGCCGACATCGTCCGCGCGGTTGGCGGC
GAGGCGGAGGTTTACCTGGACGGAGGGGTCCGGACTGGGACGGACGTGCT
GAAGGCCTTGGCGATGGGGGCCAGATGTGTGTTCATCGGCAGGCCCGCAC
TCTGGGGACTCGCTTGTAACGT Coding sequence (CDS) from alignment at Sc0000044:1352267..1356088+ >transcript:BL96961_cuf0 ID=transcript:BL96961_cuf0|Name=transcript:BL96961_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=5814bp|location=Sequence derived from alignment at Sc0000044:1352267..1356088+ (Branchiostoma lanceolatum)
ATGGCGGCCGAACCGTCCGAACTGCGGAGGGTGGAAGATTTCCGAAGAGT
CGCTGAGCGAACCCTGTCTGACGCCGCCTGGGGATACTACAGCAACGGGG
ACGGCGACAACCAGACTCTGAGGGACAACTGTGAGAGCTTTAAAAGGTAC
CGTGTGTTACCGCGGGTGTTACGTGACGTGTCCACCATAGACACCTCTGT
GACAGTGCTGGGCAGCACGTTGGACTTCCCTGTCGCCATCTCCCCCACAG
CTCATCACAAGATGGCGCACTCGGACGGAGAGAAGGCCACAGCTAGAGCC
GCAGCCTCAGCCAACACCGGGATGGCGCTCAGCTTATTTGCAAACCACTC
CTTGGAAGACGTCGCAGAAGCTGCGCCTCAAGGAACCCGCTGGTTCAACT
TTGTGCTATTCAAGGACCCGAAACGGAACAGGGAGCTGTTAGACAGAGCA
GCGAAGGCGGGCTACAAGGCAGTCTTCCTCACAGTCGACCAGCCAAGATT
CGAGTACCTAAAGCGAATAACGACCAGCAAGGGAAAGGACAAGACACATA
CGTTCTACAGCACCCCAAACCTGGTGTTTCCAGGCACGCCACCTTACGGG
ACGGAAGAGTACCGCAGTCACCTCTACTCAGCACTGAAGCAGCCTATGAC
GTGGGATGACGTAGACTGGGTGAAAAAGAACACATCATTGCCGGTCGTCC
TCAAAGGAATCCTTACAGCGGCGGATGCCCAGGAAGCTGTTCGTCACGGC
GCTGACGCCATCTTGGTGTCCAACCACGGCGGCAGGCAGCTGGACGGGGT
CCCTGCTACTATTGACGTCCTTGCCGACATCGTCCGCGCGGTTGGCGGCG
AGGCGGAGGTTTACCTGGACGGAGGGGTCCGGACTGGGACGGACGTGCTG
AAGGCCTTGGCGATGGGGGCCAGATGTGTGTTCATCGGCAGGCCCGCACT
CTGGGGACTCGCTTGTAACATGGCGGCCGAACCGTCCGAACTGCGGAGGG
TGGAAGATTTCCGAAGAGTCGCTGAGCGAACCCTGTCTGACGCCGCCTGG
GGATACTACAGCAACGGGGACGGCGACAACCAGACTCTGAGGGACAACTG
TGAGAGCTTTAAAAGGTACCGTGTGTTACCGCGGGTGTTACGTGACGTGT
CCACCATAGACACCTCTGTGACAGTGCTGGGCAGCACGTTGGACTTCCCT
GTCGCCATCTCCCCCACAGCTCATCACAAGATGGCGCACTCGGACGGAGA
GAAGGCCACAGCTAGAGCCGCAGCCTCAGCCAACACCGGGATGGCGCTCA
GCTTATTTGCAAACCACTCCTTGGAAGACGTCGCAGAAGCTGCGCCTCAA
GGAACCCGCTGGTTCAACTTTGTGCTATTCAAGGACCCGAAACGGAACAG
GGAGCTGTTAGACAGAGCAGCGAAGGCGGGCTACAAGGCAGTCTTCCTCA
CAGTCGACCAGCCAAGATTCGAGTACCTAAAGCGAATAACGACCAGCAAG
GGAAAGGACAAGACACATACGTTCTACAGCACCCCAAACCTGGTGTTTCC
AGGCACGCCACCTTACGGGACGGAAGAGTACCGCAGTCACCTCTACTCAG
CACTGAAGCAGCCTATGACGTGGGATGACGTAGACTGGGTGAAAAAGAAC
ACATCATTGCCGGTCGTCCTCAAAGGAATCCTTACAGCGGCGGATGCCCA
GGAAGCTGTTCGTCACGGCGCTGACGCCATCTTGGTGTCCAACCACGGCG
GCAGGCAGCTGGACGGGGTCCCTGCTACTATTGACGTCCTTGCCGACATC
GTCCGCGCGGTTGGCGGCGAGGCGGAGGTTTACCTGGACGGAGGGGTCCG
GACTGGGACGGACGTGCTGAAGGCCTTGGCGATGGGGGCCAGATGTGTGT
TCATCGGCAGGCCCGCACTCTGGGGACTCGCTTGTAACATGGCGGCCGAA
CCGTCCGAACTGCGGAGGGTGGAAGATTTCCGAAGAGTCGCTGAGCGAAC
CCTGTCTGACGCCGCCTGGGGATACTACAGCAACGGGGACGGCGACAACC
AGACTCTGAGGGACAACTGTGAGAGCTTTAAAAGGTACCGTGTGTTACCG
CGGGTGTTACGTGACGTGTCCACCATAGACACCTCTGTGACAGTGCTGGG
CAGCACGTTGGACTTCCCTGTCGCCATCTCCCCCACAGCTCATCACAAGA
TGGCGCACTCGGACGGAGAGAAGGCCACAGCTAGAGCCGCAGCCTCAGCC
AACACCGGGATGGCGCTCAGCTTATTTGCAAACCACTCCTTGGAAGACGT
CGCAGAAGCTGCGCCTCAAGGAACCCGCTGGTTCAACTTTGTGCTATTCA
AGGACCCGAAACGGAACAGGGAGCTGTTAGACAGAGCAGCGAAGGCGGGC
TACAAGGCAGTCTTCCTCACAGTCGACCAGCCAAGATTCGAGTACCTAAA
GCGAATAACGACCAGCAAGGGAAAGGACAAGACACATACGTTCTACAGCA
CCCCAAACCTGGTGTTTCCAGGCACGCCACCTTACGGGACGGAAGAGTAC
CGCAGTCACCTCTACTCAGCACTGAAGCAGCCTATGACGTGGGATGACGT
AGACTGGGTGAAAAAGAACACATCATTGCCGGTCGTCCTCAAAGGAATCC
TTACAGCGGCGGATGCCCAGGAAGCTGTTCGTCACGGCGCTGACGCCATC
TTGGTGTCCAACCACGGCGGCAGGCAGCTGGACGGGGTCCCTGCTACTAT
TGACGTCCTTGCCGACATCGTCCGCGCGGTTGGCGGCGAGGCGGAGGTTT
ACCTGGACGGAGGGGTCCGGACTGGGACGGACGTGCTGAAGGCCTTGGCG
ATGGGGGCCAGATGTGTGTTCATCGGCAGGCCCGCACTCTGGGGACTCGC
TTGTAACATGGCGGCCGAACCGTCCGAACTGCGGAGGGTGGAAGATTTCC
GAAGAGTCGCTGAGCGAACCCTGTCTGACGCCGCCTGGGGATACTACAGC
AACGGGGACGGCGACAACCAGACTCTGAGGGACAACTGTGAGAGCTTTAA
AAGGTACCGTGTGTTACCGCGGGTGTTACGTGACGTGTCCACCATAGACA
CCTCTGTGACAGTGCTGGGCAGCACGTTGGACTTCCCTGTCGCCATCTCC
CCCACAGCTCATCACAAGATGGCGCACTCGGACGGAGAGAAGGCCACAGC
TAGAGCCGCAGCCTCAGCCAACACCGGGATGGCGCTCAGCTTATTTGCAA
ACCACTCCTTGGAAGACGTCGCAGAAGCTGCGCCTCAAGGAACCCGCTGG
TTCAACTTTGTGCTATTCAAGGACCCGAAACGGAACAGGGAGCTGTTAGA
CAGAGCAGCGAAGGCGGGCTACAAGGCAGTCTTCCTCACAGTCGACCAGC
CAAGATTCGAGTACCTAAAGCGAATAACGACCAGCAAGGGAAAGGACAAG
ACACATACGTTCTACAGCACCCCAAACCTGGTGTTTCCAGGCACGCCACC
TTACGGGACGGAAGAGTACCGCAGTCACCTCTACTCAGCACTGAAGCAGC
CTATGACGTGGGATGACGTAGACTGGGTGAAAAAGAACACATCATTGCCG
GTCGTCCTCAAAGGAATCCTTACAGCGGCGGATGCCCAGGAAGCTGTTCG
TCACGGCGCTGACGCCATCTTGGTGTCCAACCACGGCGGCAGGCAGCTGG
ACGGGGTCCCTGCTACTATTGACGTCCTTGCCGACATCGTCCGCGCGGTT
GGCGGCGAGGCGGAGGTTTACCTGGACGGAGGGGTCCGGACTGGGACGGA
CGTGCTGAAGGCCTTGGCGATGGGGGCCAGATGTGTGTTCATCGGCAGGC
CCGCACTCTGGGGACTCGCTTGTAACATGGCGGCCGAACCGTCCGAACTG
CGGAGGGTGGAAGATTTCCGAAGAGTCGCTGAGCGAACCCTGTCTGACGC
CGCCTGGGGATACTACAGCAACGGGGACGGCGACAACCAGACTCTGAGGG
ACAACTGTGAGAGCTTTAAAAGGTACCGTGTGTTACCGCGGGTGTTACGT
GACGTGTCCACCATAGACACCTCTGTGACAGTGCTGGGCAGCACGTTGGA
CTTCCCTGTCGCCATCTCCCCCACAGCTCATCACAAGATGGCGCACTCGG
ACGGAGAGAAGGCCACAGCTAGAGCCGCAGCCTCAGCCAACACCGGGATG
GCGCTCAGCTTATTTGCAAACCACTCCTTGGAAGACGTCGCAGAAGCTGC
GCCTCAAGGAACCCGCTGGTTCAACTTTGTGCTATTCAAGGACCCGAAAC
GGAACAGGGAGCTGTTAGACAGAGCAGCGAAGGCGGGCTACAAGGCAGTC
TTCCTCACAGTCGACCAGCCAAGATTCGAGTACCTAAAGCGAATAACGAC
CAGCAAGGGAAAGGACAAGACACATACGTTCTACAGCACCCCAAACCTGG
TGTTTCCAGGCACGCCACCTTACGGGACGGAAGAGTACCGCAGTCACCTC
TACTCAGCACTGAAGCAGCCTATGACGTGGGATGACGTAGACTGGGTGAA
AAAGAACACATCATTGCCGGTCGTCCTCAAAGGAATCCTTACAGCGGCGG
ATGCCCAGGAAGCTGTTCGTCACGGCGCTGACGCCATCTTGGTGTCCAAC
CACGGCGGCAGGCAGCTGGACGGGGTCCCTGCTACTATTGACGTCCTTGC
CGACATCGTCCGCGCGGTTGGCGGCGAGGCGGAGGTTTACCTGGACGGAG
GGGTCCGGACTGGGACGGACGTGCTGAAGGCCTTGGCGATGGGGGCCAGA
TGTGTGTTCATCGGCAGGCCCGCACTCTGGGGACTCGCTTGTAACATGGC
GGCCGAACCGTCCGAACTGCGGAGGGTGGAAGATTTCCGAAGAGTCGCTG
AGCGAACCCTGTCTGACGCCGCCTGGGGATACTACAGCAACGGGGACGGC
GACAACCAGACTCTGAGGGACAACTGTGAGAGCTTTAAAAGGTACCGTGT
GTTACCGCGGGTGTTACGTGACGTGTCCACCATAGACACCTCTGTGACAG
TGCTGGGCAGCACGTTGGACTTCCCTGTCGCCATCTCCCCCACAGCTCAT
CACAAGATGGCGCACTCGGACGGAGAGAAGGCCACAGCTAGAGCCGCAGC
CTCAGCCAACACCGGGATGGCGCTCAGCTTATTTGCAAACCACTCCTTGG
AAGACGTCGCAGAAGCTGCGCCTCAAGGAACCCGCTGGTTCAACTTTGTG
CTATTCAAGGACCCGAAACGGAACAGGGAGCTGTTAGACAGAGCAGCGAA
GGCGGGCTACAAGGCAGTCTTCCTCACAGTCGACCAGCCAAGATTCGAGT
ACCTAAAGCGAATAACGACCAGCAAGGGAAAGGACAAGACACATACGTTC
TACAGCACCCCAAACCTGGTGTTTCCAGGCACGCCACCTTACGGGACGGA
AGAGTACCGCAGTCACCTCTACTCAGCACTGAAGCAGCCTATGACGTGGG
ATGACGTAGACTGGGTGAAAAAGAACACATCATTGCCGGTCGTCCTCAAA
GGAATCCTTACAGCGGCGGATGCCCAGGAAGCTGTTCGTCACGGCGCTGA
CGCCATCTTGGTGTCCAACCACGGCGGCAGGCAGCTGGACGGGGTCCCTG
CTACTATTGACGTCCTTGCCGACATCGTCCGCGCGGTTGGCGGCGAGGCG
GAGGTTTACCTGGACGGAGGGGTCCGGACTGGGACGGACGTGCTGAAGGC
CTTGGCGATGGGGGCCAGATGTGTGTTCATCGGCAGGCCCGCACTCTGGG
GACTCGCTTGTAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000044 | genome | Sc0000044:1352267..1356088 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96961_cuf0 |
| Biotype | protein_coding |
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