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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96943_cuf13 >transcript:BL96943_cuf13-protein ID=transcript:BL96943_cuf13-protein|Name=transcript:BL96943_cuf13|organism=Branchiostoma lanceolatum|type=polypeptide|length=281bp
VDGVRRTLPVCLNSQATIRLSGDMVLVETDMCVTVKYDGDHRVEVEVPLD
YAGQVDGLCGNFNGNPDDELLRPDQSLALNELDMGNSWLAPDDAACQAND
EQFDISTVDQAFMGEIESATNCGQITDINGAFQPCLDYVNPANYFDACVY
DMAAENGEHEMLCNAMEAYADACAAAGVVIVGWRDETMCAVNCPPNSHYS
LVTACPATCANPLAPMRCQRTTLPGCQCDEGFLLSGSRCVRAEECGCLQG
DQYYALGEEWGVEGTGQLCVCLPGGSIQCVA Run BLAST on NCBI mRNA from alignment at Sc0000044:1008583..1012415+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96943_cuf13 ID=transcript:BL96943_cuf13|Name=transcript:BL96943_cuf13|organism=Branchiostoma lanceolatum|type=mRNA|length=3833bp|location=Sequence derived from alignment at Sc0000044:1008583..1012415+ (Branchiostoma lanceolatum)
GGTTGACGGTGTGCGCCGTACACTACCCGTGTGCCTGAACAGTCAGGCGA
CCATCCGGCTGAGCGGAGACATGGTTCTGGTGGAGACCGACATGTGCGTC
ACCGTCAAGTACGACGGAGATCACCGGGTAGAGGTGGAGGTGCCGCTGGA
CTACGCTGGTACGTTTGTTTGTGTGTTTGTTTGTGTGTGTGTGTGTATGT
ATGTATGTGTGCATGTGTGTGTGTGTGTGTGTTTTGTGTGTGTGTGTGTT
TTGTGTGTGTGTGTGTTACTATATATGTGTACGAGTATATGTACAAGGGA
CCACATAAGAACAAGCTAATCAATGTGATTCGATTTTTTTGTAGTCCCGG
CCTTAGATAAATTCCCCTTAGATGTCAGTGCAGAGAACCCTATCTATAGA
TACCACCTGTCAACTTAACCAGATCTTATCGGTCCCCTGAGTGGTCTTCT
TGGGTAGTACTTACTGTATGTGGCCTCTCCCTACAGGCCAGGTTGACGGT
CTGTGCGGGAACTTTAACGGTAACCCTGACGACGAGCTGCTGCGGCCCGA
CCAGAGTCTGGCTCTGAACGAGTTGGACATGGGCAACAGCTGGCTCGCTC
CGGACGACGCGGCGTGAGTACAGAATAGCTATGCATCAACAATATCTAAC
GAAGTCCTTTATTTTTACACTTGTCAACAAAATCTATTCTTACAGCTGCC
GACGTTCCGGTAACCGTCTGTCACCATCTTTAGGGCAATGACGACTGATT
CTACTTCGCACTGTATCTAGGTTTTAACTAGTGACTATTATATATAGCAA
GCTGATTCGCGTGATGTTTAGATATATCGCATGCTTCTGACTTGTGAGTA
GTACTTGCTGGCAATATCGCATCTAGATCTCAAGGTGTAGAAGTTCTCGG
CTACAATGTTCGCAATGCTTATATGACAAAAATAACGATCCGGTTGGGCG
TAATTGCGCTTCAGCATTTTTAGGTAGTCAAACTTCAAGAACGTGAAAGA
GTAGGTACGTATCCACATCCAAATTGAGCATGCAACTTCCCTGTTTAACC
ATTCATCATGATGGACAATACTTACGTCATAGTCACGTGTGTGTAAACGC
CACCTTTTGTCTCCAATACCTCATAGTTGCCAGGCAAACGATGAGCAGTT
CGACATCAGCACGGTTGACCAGGCGTTCATGGGGGAGATCGAGAGCGCCA
CCAACTGTGGGCAGATCACCGACATCAACGGGGCCTTCCAGGTAGGAAAA
CGCTGTGTGTCACTTCGAACAAAAAAGAACAGTAACTGTTGGAATCTAAT
GGGAGACAAAATTGTAGGGGCATTAACTATATCAGTAGACAGAGCACTGG
GTTTCCAGGTCAGCAAATATTATTCAGTCTTGAGCACGAAGGCTCAATTT
TACCGACAAGATTAGTCATTATTAGCTCGTTCTGTATGTAGATGACAGAC
ACAACTGGAGTCTTCAAGTATGTCAAATAATGTTCTCATCTGACGAAGAA
GAAAGCTTTACAGAATTGTTGGCGTATCATTTCTAGTTAAGACAATTAAT
GCTAGATGTATGATGAAAGTGAGGGAAGAAAACGTAGGCAAATGTCACTT
GTTTTTGTTCAACACTGAGAAAAAAACGAAAGCTCGCTCTGATTTTGGTT
AATTACAGCAATAATAACCCCCTAACCGTTAACAGACGGCTAGAAGATAG
AAGTGACTGTATCTAATCATAATTTTGTTGATTTCATTTCCAACAGCCAT
GCCTCGACTACGTGAACCCGGCGAACTACTTCGACGCATGCGTGTACGAC
ATGGCAGCCGAGAACGGGGAACATGAGATGCTCTGCAACGCCATGGAGGC
GTACGCCGACGCATGCGCAGCTGCCGGTGTCGTCATCGTCGGCTGGAGGG
ACGAGACTATGTGTGGTAAGTCAGACGTCATCTTTAAGATATCTGATGGT
TTGTCCAAAGTAAGGTTAGTCGTAAACAGTTCATATCAATCTAAGGTAAG
GCAGACAAGTAATAAAAATGCGGCTACGCTACGACTCGGATAGGTATACC
AAAGAGCCCCTATGTATATATTTATTCAATTTTGTAATTTCTATATTGGT
GTGTTCATTATCACTATCGGTCGGCAGCAACTCTACCTACTGCACTTTTT
GCCCAGTTCATTTTGTTACCGGTACTTTGAGTGATCTAATCTGGTGTATA
TCAAAGAGCCCCTATATATATGTTAATTCAATTTTGTAATTTCTATTGGT
TTGTTCATTATCACTATCGGTCGGCAGCAACTCTACCAACATTTTTTTTG
CCCAGTTCATTTTGTTACCGGTACTTTGAGTGATCTATTCTGGTGGGAGT
TGGGTCATTGCGGTCGGTTGGGGGCAGTCGGTTCGGGATGTTAACGAATA
TTGATAATCTACTGAAATTGACTCCCAGCGGACAACCATGTTCTAACGTA
CATTTTGTCTCCCCTTAGCCGTTAACTGCCCACCCAACAGCCACTACTCC
CTGGTAACAGCCTGCCCAGCGACCTGTGCTAACCCTCTTGCGCCCATGCG
TTGCCAGCGGACCACCATGTATCAAAGCGTTCTTGCATGTACTAATAATG
TACCATTCTGTGTCTCCCCTTAGCCGTTAACTGCCCGCCCAACAGCCACT
ACTCCCTGGTAACAGCCTGCCCAGCTACCTGCGCTAACCCTCTTGCGCCC
ATGCGGTGCCAGCGGACCACCCTGCACTTATGATAATGTACAGTTTTTGT
CTCCCCCTCAGCCGTTAACTGCCCACCCAACAGCCACTACTCCCTGGTAA
CAGCCTGCCCGGCTAGCTGCGTTAACCCTCTTGCGCCCATGCGGCGCCAG
CGGACCACATTGTATCAAGCACATTCCCTTGCCAAACTGTCGTCTGATGT
AGCATTAATGCCAGAAATACATATGCAGCACTAATGCTTGGTTAGTGCAC
ACTGCCATGGTAATTATGGTTGTCCAAGTACCACTCCCTCAATGTCCTAC
CAGCATAAATCCATCATTAATGCCCAATGTACTCAGCTAAGGTGCGTGTA
GTGCGGCATTAATGCTACATTAGACAACAGTTTGGCAAGGGATAATACTC
AAGAATATAATGTTCTGGCATGTACTAATAATGTACCATTCTGTGCCTTT
ACTTAGCCGTTAACTGCCCACCCAACAGCCACTACTCCCTGGTAACAGCC
TGCCCAGCTACCTGCGCTAACCCTCTTGCGCCCATGCGCTGCCAGCGGAC
CACCCTGCCGGGCTGCCAGTGCGACGAGGGTTTCCTTCTGAGCGGGTCCC
GGTGCGTGCGAGCAGAGGAGTGCGGCTGCCTACAGGGAGACCAGTACTAC
GCTGTACGTGGATCTGGTTTACTTATTATCTACGCTTACCCCTTACTTTT
CGGATGTTTGAAGTCAAAACGCGTGAGTAAGGAAGTGAGTGAGTGATTTA
GTGAGTTAATGAGGGAGTGAGTGAGTCAGGGATAAATTCTGCTATCTCTT
ATTGCGTTGTTTTTGTCGCAGCTTGGTAGGAGTGGAGCGCTGATGGCACG
GTCCAGCGATGCGTCTGTGTGTCTGTACTCTTTACGTATATGTTTCGGAC
CTACGTTCATGGGGTGAAGTTTAATAATACCTTGTTTGTGTAGCTTTGAG
AAGAATGGGAGTTGAGGGTACCGGTCAGCTGTGCGTGTGTTTGTGTGTCT
GTGTCTGTCTGTGTACCATTGTCTGTGTGTTTCTGAAATATGGTCCTGTT
ACAGCTCGGAGAGGAGTGGGGAGTGGAGGGTACGGGCCAGCTGTGTGTGT
GCCTGCCAGGAGGATCCATCCAGTGCGTGGCCG Coding sequence (CDS) from alignment at Sc0000044:1008583..1012415+ >transcript:BL96943_cuf13 ID=transcript:BL96943_cuf13|Name=transcript:BL96943_cuf13|organism=Branchiostoma lanceolatum|type=CDS|length=5058bp|location=Sequence derived from alignment at Sc0000044:1008583..1012415+ (Branchiostoma lanceolatum)
GTTGACGGTGTGCGCCGTACACTACCCGTGTGCCTGAACAGTCAGGCGAC
CATCCGGCTGAGCGGAGACATGGTTCTGGTGGAGACCGACATGTGCGTCA
CCGTCAAGTACGACGGAGATCACCGGGTAGAGGTGGAGGTGCCGCTGGAC
TACGCTGGCCAGGTTGACGGTCTGTGCGGGAACTTTAACGGTAACCCTGA
CGACGAGCTGCTGCGGCCCGACCAGAGTCTGGCTCTGAACGAGTTGGACA
TGGGCAACAGCTGGCTCGCTCCGGACGACGCGGCTTGCCAGGCAAACGAT
GAGCAGTTCGACATCAGCACGGTTGACCAGGCGTTCATGGGGGAGATCGA
GAGCGCCACCAACTGTGGGCAGATCACCGACATCAACGGGGCCTTCCAGC
CATGCCTCGACTACGTGAACCCGGCGAACTACTTCGACGCATGCGTGTAC
GACATGGCAGCCGAGAACGGGGAACATGAGATGCTCTGCAACGCCATGGA
GGCGTACGCCGACGCATGCGCAGCTGCCGGTGTCGTCATCGTCGGCTGGA
GGGACGAGACTATGTGTGCCGTTAACTGCCCACCCAACAGCCACTACTCC
CTGGTAACAGCCTGCCCAGCTACCTGCGCTAACCCTCTTGCGCCCATGCG
CTGCCAGCGGACCACCCTGCCGGGCTGCCAGTGCGACGAGGGTTTCCTTC
TGAGCGGGTCCCGGTGCGTGCGAGCAGAGGAGTGCGGCTGCCTACAGGGA
GACCAGTACTACGCTCTCGGAGAGGAGTGGGGAGTGGAGGGTACGGGCCA
GCTGTGTGTGTGCCTGCCAGGAGGATCCATCCAGTGCGTGGCCGTTGACG
GTGTGCGCCGTACACTACCCGTGTGCCTGAACAGTCAGGCGACCATCCGG
CTGAGCGGAGACATGGTTCTGGTGGAGACCGACATGTGCGTCACCGTCAA
GTACGACGGAGATCACCGGGTAGAGGTGGAGGTGCCGCTGGACTACGCTG
GCCAGGTTGACGGTCTGTGCGGGAACTTTAACGGTAACCCTGACGACGAG
CTGCTGCGGCCCGACCAGAGTCTGGCTCTGAACGAGTTGGACATGGGCAA
CAGCTGGCTCGCTCCGGACGACGCGGCTTGCCAGGCAAACGATGAGCAGT
TCGACATCAGCACGGTTGACCAGGCGTTCATGGGGGAGATCGAGAGCGCC
ACCAACTGTGGGCAGATCACCGACATCAACGGGGCCTTCCAGCCATGCCT
CGACTACGTGAACCCGGCGAACTACTTCGACGCATGCGTGTACGACATGG
CAGCCGAGAACGGGGAACATGAGATGCTCTGCAACGCCATGGAGGCGTAC
GCCGACGCATGCGCAGCTGCCGGTGTCGTCATCGTCGGCTGGAGGGACGA
GACTATGTGTGCCGTTAACTGCCCACCCAACAGCCACTACTCCCTGGTAA
CAGCCTGCCCAGCTACCTGCGCTAACCCTCTTGCGCCCATGCGCTGCCAG
CGGACCACCCTGCCGGGCTGCCAGTGCGACGAGGGTTTCCTTCTGAGCGG
GTCCCGGTGCGTGCGAGCAGAGGAGTGCGGCTGCCTACAGGGAGACCAGT
ACTACGCTCTCGGAGAGGAGTGGGGAGTGGAGGGTACGGGCCAGCTGTGT
GTGTGCCTGCCAGGAGGATCCATCCAGTGCGTGGCCGTTGACGGTGTGCG
CCGTACACTACCCGTGTGCCTGAACAGTCAGGCGACCATCCGGCTGAGCG
GAGACATGGTTCTGGTGGAGACCGACATGTGCGTCACCGTCAAGTACGAC
GGAGATCACCGGGTAGAGGTGGAGGTGCCGCTGGACTACGCTGGCCAGGT
TGACGGTCTGTGCGGGAACTTTAACGGTAACCCTGACGACGAGCTGCTGC
GGCCCGACCAGAGTCTGGCTCTGAACGAGTTGGACATGGGCAACAGCTGG
CTCGCTCCGGACGACGCGGCTTGCCAGGCAAACGATGAGCAGTTCGACAT
CAGCACGGTTGACCAGGCGTTCATGGGGGAGATCGAGAGCGCCACCAACT
GTGGGCAGATCACCGACATCAACGGGGCCTTCCAGCCATGCCTCGACTAC
GTGAACCCGGCGAACTACTTCGACGCATGCGTGTACGACATGGCAGCCGA
GAACGGGGAACATGAGATGCTCTGCAACGCCATGGAGGCGTACGCCGACG
CATGCGCAGCTGCCGGTGTCGTCATCGTCGGCTGGAGGGACGAGACTATG
TGTGCCGTTAACTGCCCACCCAACAGCCACTACTCCCTGGTAACAGCCTG
CCCAGCTACCTGCGCTAACCCTCTTGCGCCCATGCGCTGCCAGCGGACCA
CCCTGCCGGGCTGCCAGTGCGACGAGGGTTTCCTTCTGAGCGGGTCCCGG
TGCGTGCGAGCAGAGGAGTGCGGCTGCCTACAGGGAGACCAGTACTACGC
TCTCGGAGAGGAGTGGGGAGTGGAGGGTACGGGCCAGCTGTGTGTGTGCC
TGCCAGGAGGATCCATCCAGTGCGTGGCCGTTGACGGTGTGCGCCGTACA
CTACCCGTGTGCCTGAACAGTCAGGCGACCATCCGGCTGAGCGGAGACAT
GGTTCTGGTGGAGACCGACATGTGCGTCACCGTCAAGTACGACGGAGATC
ACCGGGTAGAGGTGGAGGTGCCGCTGGACTACGCTGGCCAGGTTGACGGT
CTGTGCGGGAACTTTAACGGTAACCCTGACGACGAGCTGCTGCGGCCCGA
CCAGAGTCTGGCTCTGAACGAGTTGGACATGGGCAACAGCTGGCTCGCTC
CGGACGACGCGGCTTGCCAGGCAAACGATGAGCAGTTCGACATCAGCACG
GTTGACCAGGCGTTCATGGGGGAGATCGAGAGCGCCACCAACTGTGGGCA
GATCACCGACATCAACGGGGCCTTCCAGCCATGCCTCGACTACGTGAACC
CGGCGAACTACTTCGACGCATGCGTGTACGACATGGCAGCCGAGAACGGG
GAACATGAGATGCTCTGCAACGCCATGGAGGCGTACGCCGACGCATGCGC
AGCTGCCGGTGTCGTCATCGTCGGCTGGAGGGACGAGACTATGTGTGCCG
TTAACTGCCCACCCAACAGCCACTACTCCCTGGTAACAGCCTGCCCAGCT
ACCTGCGCTAACCCTCTTGCGCCCATGCGCTGCCAGCGGACCACCCTGCC
GGGCTGCCAGTGCGACGAGGGTTTCCTTCTGAGCGGGTCCCGGTGCGTGC
GAGCAGAGGAGTGCGGCTGCCTACAGGGAGACCAGTACTACGCTCTCGGA
GAGGAGTGGGGAGTGGAGGGTACGGGCCAGCTGTGTGTGTGCCTGCCAGG
AGGATCCATCCAGTGCGTGGCCGTTGACGGTGTGCGCCGTACACTACCCG
TGTGCCTGAACAGTCAGGCGACCATCCGGCTGAGCGGAGACATGGTTCTG
GTGGAGACCGACATGTGCGTCACCGTCAAGTACGACGGAGATCACCGGGT
AGAGGTGGAGGTGCCGCTGGACTACGCTGGCCAGGTTGACGGTCTGTGCG
GGAACTTTAACGGTAACCCTGACGACGAGCTGCTGCGGCCCGACCAGAGT
CTGGCTCTGAACGAGTTGGACATGGGCAACAGCTGGCTCGCTCCGGACGA
CGCGGCTTGCCAGGCAAACGATGAGCAGTTCGACATCAGCACGGTTGACC
AGGCGTTCATGGGGGAGATCGAGAGCGCCACCAACTGTGGGCAGATCACC
GACATCAACGGGGCCTTCCAGCCATGCCTCGACTACGTGAACCCGGCGAA
CTACTTCGACGCATGCGTGTACGACATGGCAGCCGAGAACGGGGAACATG
AGATGCTCTGCAACGCCATGGAGGCGTACGCCGACGCATGCGCAGCTGCC
GGTGTCGTCATCGTCGGCTGGAGGGACGAGACTATGTGTGCCGTTAACTG
CCCACCCAACAGCCACTACTCCCTGGTAACAGCCTGCCCAGCTACCTGCG
CTAACCCTCTTGCGCCCATGCGCTGCCAGCGGACCACCCTGCCGGGCTGC
CAGTGCGACGAGGGTTTCCTTCTGAGCGGGTCCCGGTGCGTGCGAGCAGA
GGAGTGCGGCTGCCTACAGGGAGACCAGTACTACGCTCTCGGAGAGGAGT
GGGGAGTGGAGGGTACGGGCCAGCTGTGTGTGTGCCTGCCAGGAGGATCC
ATCCAGTGCGTGGCCGTTGACGGTGTGCGCCGTACACTACCCGTGTGCCT
GAACAGTCAGGCGACCATCCGGCTGAGCGGAGACATGGTTCTGGTGGAGA
CCGACATGTGCGTCACCGTCAAGTACGACGGAGATCACCGGGTAGAGGTG
GAGGTGCCGCTGGACTACGCTGGCCAGGTTGACGGTCTGTGCGGGAACTT
TAACGGTAACCCTGACGACGAGCTGCTGCGGCCCGACCAGAGTCTGGCTC
TGAACGAGTTGGACATGGGCAACAGCTGGCTCGCTCCGGACGACGCGGCT
TGCCAGGCAAACGATGAGCAGTTCGACATCAGCACGGTTGACCAGGCGTT
CATGGGGGAGATCGAGAGCGCCACCAACTGTGGGCAGATCACCGACATCA
ACGGGGCCTTCCAGCCATGCCTCGACTACGTGAACCCGGCGAACTACTTC
GACGCATGCGTGTACGACATGGCAGCCGAGAACGGGGAACATGAGATGCT
CTGCAACGCCATGGAGGCGTACGCCGACGCATGCGCAGCTGCCGGTGTCG
TCATCGTCGGCTGGAGGGACGAGACTATGTGTGCCGTTAACTGCCCACCC
AACAGCCACTACTCCCTGGTAACAGCCTGCCCAGCTACCTGCGCTAACCC
TCTTGCGCCCATGCGCTGCCAGCGGACCACCCTGCCGGGCTGCCAGTGCG
ACGAGGGTTTCCTTCTGAGCGGGTCCCGGTGCGTGCGAGCAGAGGAGTGC
GGCTGCCTACAGGGAGACCAGTACTACGCTCTCGGAGAGGAGTGGGGAGT
GGAGGGTACGGGCCAGCTGTGTGTGTGCCTGCCAGGAGGATCCATCCAGT
GCGTGGCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000044 | genome | Sc0000044:1008583..1012415 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96943_cuf13 |
| Biotype | protein_coding |
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