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transcript:BL96943_cuf13 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96943_cuf13
Unique Nametranscript:BL96943_cuf13
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96943_cuf13

>transcript:BL96943_cuf13-protein ID=transcript:BL96943_cuf13-protein|Name=transcript:BL96943_cuf13|organism=Branchiostoma lanceolatum|type=polypeptide|length=281bp
VDGVRRTLPVCLNSQATIRLSGDMVLVETDMCVTVKYDGDHRVEVEVPLD
YAGQVDGLCGNFNGNPDDELLRPDQSLALNELDMGNSWLAPDDAACQAND
EQFDISTVDQAFMGEIESATNCGQITDINGAFQPCLDYVNPANYFDACVY
DMAAENGEHEMLCNAMEAYADACAAAGVVIVGWRDETMCAVNCPPNSHYS
LVTACPATCANPLAPMRCQRTTLPGCQCDEGFLLSGSRCVRAEECGCLQG
DQYYALGEEWGVEGTGQLCVCLPGGSIQCVA
Run BLAST on NCBI

mRNA from alignment at Sc0000044:1008583..1012415+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96943_cuf13 ID=transcript:BL96943_cuf13|Name=transcript:BL96943_cuf13|organism=Branchiostoma lanceolatum|type=mRNA|length=3833bp|location=Sequence derived from alignment at Sc0000044:1008583..1012415+ (Branchiostoma lanceolatum)
GGTTGACGGTGTGCGCCGTACACTACCCGTGTGCCTGAACAGTCAGGCGA CCATCCGGCTGAGCGGAGACATGGTTCTGGTGGAGACCGACATGTGCGTC ACCGTCAAGTACGACGGAGATCACCGGGTAGAGGTGGAGGTGCCGCTGGA CTACGCTGGTACGTTTGTTTGTGTGTTTGTTTGTGTGTGTGTGTGTATGT ATGTATGTGTGCATGTGTGTGTGTGTGTGTGTTTTGTGTGTGTGTGTGTT TTGTGTGTGTGTGTGTTACTATATATGTGTACGAGTATATGTACAAGGGA CCACATAAGAACAAGCTAATCAATGTGATTCGATTTTTTTGTAGTCCCGG CCTTAGATAAATTCCCCTTAGATGTCAGTGCAGAGAACCCTATCTATAGA TACCACCTGTCAACTTAACCAGATCTTATCGGTCCCCTGAGTGGTCTTCT TGGGTAGTACTTACTGTATGTGGCCTCTCCCTACAGGCCAGGTTGACGGT CTGTGCGGGAACTTTAACGGTAACCCTGACGACGAGCTGCTGCGGCCCGA CCAGAGTCTGGCTCTGAACGAGTTGGACATGGGCAACAGCTGGCTCGCTC CGGACGACGCGGCGTGAGTACAGAATAGCTATGCATCAACAATATCTAAC GAAGTCCTTTATTTTTACACTTGTCAACAAAATCTATTCTTACAGCTGCC GACGTTCCGGTAACCGTCTGTCACCATCTTTAGGGCAATGACGACTGATT CTACTTCGCACTGTATCTAGGTTTTAACTAGTGACTATTATATATAGCAA GCTGATTCGCGTGATGTTTAGATATATCGCATGCTTCTGACTTGTGAGTA GTACTTGCTGGCAATATCGCATCTAGATCTCAAGGTGTAGAAGTTCTCGG CTACAATGTTCGCAATGCTTATATGACAAAAATAACGATCCGGTTGGGCG TAATTGCGCTTCAGCATTTTTAGGTAGTCAAACTTCAAGAACGTGAAAGA GTAGGTACGTATCCACATCCAAATTGAGCATGCAACTTCCCTGTTTAACC ATTCATCATGATGGACAATACTTACGTCATAGTCACGTGTGTGTAAACGC CACCTTTTGTCTCCAATACCTCATAGTTGCCAGGCAAACGATGAGCAGTT CGACATCAGCACGGTTGACCAGGCGTTCATGGGGGAGATCGAGAGCGCCA CCAACTGTGGGCAGATCACCGACATCAACGGGGCCTTCCAGGTAGGAAAA CGCTGTGTGTCACTTCGAACAAAAAAGAACAGTAACTGTTGGAATCTAAT GGGAGACAAAATTGTAGGGGCATTAACTATATCAGTAGACAGAGCACTGG GTTTCCAGGTCAGCAAATATTATTCAGTCTTGAGCACGAAGGCTCAATTT TACCGACAAGATTAGTCATTATTAGCTCGTTCTGTATGTAGATGACAGAC ACAACTGGAGTCTTCAAGTATGTCAAATAATGTTCTCATCTGACGAAGAA GAAAGCTTTACAGAATTGTTGGCGTATCATTTCTAGTTAAGACAATTAAT GCTAGATGTATGATGAAAGTGAGGGAAGAAAACGTAGGCAAATGTCACTT GTTTTTGTTCAACACTGAGAAAAAAACGAAAGCTCGCTCTGATTTTGGTT AATTACAGCAATAATAACCCCCTAACCGTTAACAGACGGCTAGAAGATAG AAGTGACTGTATCTAATCATAATTTTGTTGATTTCATTTCCAACAGCCAT GCCTCGACTACGTGAACCCGGCGAACTACTTCGACGCATGCGTGTACGAC ATGGCAGCCGAGAACGGGGAACATGAGATGCTCTGCAACGCCATGGAGGC GTACGCCGACGCATGCGCAGCTGCCGGTGTCGTCATCGTCGGCTGGAGGG ACGAGACTATGTGTGGTAAGTCAGACGTCATCTTTAAGATATCTGATGGT TTGTCCAAAGTAAGGTTAGTCGTAAACAGTTCATATCAATCTAAGGTAAG GCAGACAAGTAATAAAAATGCGGCTACGCTACGACTCGGATAGGTATACC AAAGAGCCCCTATGTATATATTTATTCAATTTTGTAATTTCTATATTGGT GTGTTCATTATCACTATCGGTCGGCAGCAACTCTACCTACTGCACTTTTT GCCCAGTTCATTTTGTTACCGGTACTTTGAGTGATCTAATCTGGTGTATA TCAAAGAGCCCCTATATATATGTTAATTCAATTTTGTAATTTCTATTGGT TTGTTCATTATCACTATCGGTCGGCAGCAACTCTACCAACATTTTTTTTG CCCAGTTCATTTTGTTACCGGTACTTTGAGTGATCTATTCTGGTGGGAGT TGGGTCATTGCGGTCGGTTGGGGGCAGTCGGTTCGGGATGTTAACGAATA TTGATAATCTACTGAAATTGACTCCCAGCGGACAACCATGTTCTAACGTA CATTTTGTCTCCCCTTAGCCGTTAACTGCCCACCCAACAGCCACTACTCC CTGGTAACAGCCTGCCCAGCGACCTGTGCTAACCCTCTTGCGCCCATGCG TTGCCAGCGGACCACCATGTATCAAAGCGTTCTTGCATGTACTAATAATG TACCATTCTGTGTCTCCCCTTAGCCGTTAACTGCCCGCCCAACAGCCACT ACTCCCTGGTAACAGCCTGCCCAGCTACCTGCGCTAACCCTCTTGCGCCC ATGCGGTGCCAGCGGACCACCCTGCACTTATGATAATGTACAGTTTTTGT CTCCCCCTCAGCCGTTAACTGCCCACCCAACAGCCACTACTCCCTGGTAA CAGCCTGCCCGGCTAGCTGCGTTAACCCTCTTGCGCCCATGCGGCGCCAG CGGACCACATTGTATCAAGCACATTCCCTTGCCAAACTGTCGTCTGATGT AGCATTAATGCCAGAAATACATATGCAGCACTAATGCTTGGTTAGTGCAC ACTGCCATGGTAATTATGGTTGTCCAAGTACCACTCCCTCAATGTCCTAC CAGCATAAATCCATCATTAATGCCCAATGTACTCAGCTAAGGTGCGTGTA GTGCGGCATTAATGCTACATTAGACAACAGTTTGGCAAGGGATAATACTC AAGAATATAATGTTCTGGCATGTACTAATAATGTACCATTCTGTGCCTTT ACTTAGCCGTTAACTGCCCACCCAACAGCCACTACTCCCTGGTAACAGCC TGCCCAGCTACCTGCGCTAACCCTCTTGCGCCCATGCGCTGCCAGCGGAC CACCCTGCCGGGCTGCCAGTGCGACGAGGGTTTCCTTCTGAGCGGGTCCC GGTGCGTGCGAGCAGAGGAGTGCGGCTGCCTACAGGGAGACCAGTACTAC GCTGTACGTGGATCTGGTTTACTTATTATCTACGCTTACCCCTTACTTTT CGGATGTTTGAAGTCAAAACGCGTGAGTAAGGAAGTGAGTGAGTGATTTA GTGAGTTAATGAGGGAGTGAGTGAGTCAGGGATAAATTCTGCTATCTCTT ATTGCGTTGTTTTTGTCGCAGCTTGGTAGGAGTGGAGCGCTGATGGCACG GTCCAGCGATGCGTCTGTGTGTCTGTACTCTTTACGTATATGTTTCGGAC CTACGTTCATGGGGTGAAGTTTAATAATACCTTGTTTGTGTAGCTTTGAG AAGAATGGGAGTTGAGGGTACCGGTCAGCTGTGCGTGTGTTTGTGTGTCT GTGTCTGTCTGTGTACCATTGTCTGTGTGTTTCTGAAATATGGTCCTGTT ACAGCTCGGAGAGGAGTGGGGAGTGGAGGGTACGGGCCAGCTGTGTGTGT GCCTGCCAGGAGGATCCATCCAGTGCGTGGCCG

Coding sequence (CDS) from alignment at Sc0000044:1008583..1012415+

>transcript:BL96943_cuf13 ID=transcript:BL96943_cuf13|Name=transcript:BL96943_cuf13|organism=Branchiostoma lanceolatum|type=CDS|length=5058bp|location=Sequence derived from alignment at Sc0000044:1008583..1012415+ (Branchiostoma lanceolatum)
GTTGACGGTGTGCGCCGTACACTACCCGTGTGCCTGAACAGTCAGGCGAC
CATCCGGCTGAGCGGAGACATGGTTCTGGTGGAGACCGACATGTGCGTCA
CCGTCAAGTACGACGGAGATCACCGGGTAGAGGTGGAGGTGCCGCTGGAC
TACGCTGGCCAGGTTGACGGTCTGTGCGGGAACTTTAACGGTAACCCTGA
CGACGAGCTGCTGCGGCCCGACCAGAGTCTGGCTCTGAACGAGTTGGACA
TGGGCAACAGCTGGCTCGCTCCGGACGACGCGGCTTGCCAGGCAAACGAT
GAGCAGTTCGACATCAGCACGGTTGACCAGGCGTTCATGGGGGAGATCGA
GAGCGCCACCAACTGTGGGCAGATCACCGACATCAACGGGGCCTTCCAGC
CATGCCTCGACTACGTGAACCCGGCGAACTACTTCGACGCATGCGTGTAC
GACATGGCAGCCGAGAACGGGGAACATGAGATGCTCTGCAACGCCATGGA
GGCGTACGCCGACGCATGCGCAGCTGCCGGTGTCGTCATCGTCGGCTGGA
GGGACGAGACTATGTGTGCCGTTAACTGCCCACCCAACAGCCACTACTCC
CTGGTAACAGCCTGCCCAGCTACCTGCGCTAACCCTCTTGCGCCCATGCG
CTGCCAGCGGACCACCCTGCCGGGCTGCCAGTGCGACGAGGGTTTCCTTC
TGAGCGGGTCCCGGTGCGTGCGAGCAGAGGAGTGCGGCTGCCTACAGGGA
GACCAGTACTACGCTCTCGGAGAGGAGTGGGGAGTGGAGGGTACGGGCCA
GCTGTGTGTGTGCCTGCCAGGAGGATCCATCCAGTGCGTGGCCGTTGACG
GTGTGCGCCGTACACTACCCGTGTGCCTGAACAGTCAGGCGACCATCCGG
CTGAGCGGAGACATGGTTCTGGTGGAGACCGACATGTGCGTCACCGTCAA
GTACGACGGAGATCACCGGGTAGAGGTGGAGGTGCCGCTGGACTACGCTG
GCCAGGTTGACGGTCTGTGCGGGAACTTTAACGGTAACCCTGACGACGAG
CTGCTGCGGCCCGACCAGAGTCTGGCTCTGAACGAGTTGGACATGGGCAA
CAGCTGGCTCGCTCCGGACGACGCGGCTTGCCAGGCAAACGATGAGCAGT
TCGACATCAGCACGGTTGACCAGGCGTTCATGGGGGAGATCGAGAGCGCC
ACCAACTGTGGGCAGATCACCGACATCAACGGGGCCTTCCAGCCATGCCT
CGACTACGTGAACCCGGCGAACTACTTCGACGCATGCGTGTACGACATGG
CAGCCGAGAACGGGGAACATGAGATGCTCTGCAACGCCATGGAGGCGTAC
GCCGACGCATGCGCAGCTGCCGGTGTCGTCATCGTCGGCTGGAGGGACGA
GACTATGTGTGCCGTTAACTGCCCACCCAACAGCCACTACTCCCTGGTAA
CAGCCTGCCCAGCTACCTGCGCTAACCCTCTTGCGCCCATGCGCTGCCAG
CGGACCACCCTGCCGGGCTGCCAGTGCGACGAGGGTTTCCTTCTGAGCGG
GTCCCGGTGCGTGCGAGCAGAGGAGTGCGGCTGCCTACAGGGAGACCAGT
ACTACGCTCTCGGAGAGGAGTGGGGAGTGGAGGGTACGGGCCAGCTGTGT
GTGTGCCTGCCAGGAGGATCCATCCAGTGCGTGGCCGTTGACGGTGTGCG
CCGTACACTACCCGTGTGCCTGAACAGTCAGGCGACCATCCGGCTGAGCG
GAGACATGGTTCTGGTGGAGACCGACATGTGCGTCACCGTCAAGTACGAC
GGAGATCACCGGGTAGAGGTGGAGGTGCCGCTGGACTACGCTGGCCAGGT
TGACGGTCTGTGCGGGAACTTTAACGGTAACCCTGACGACGAGCTGCTGC
GGCCCGACCAGAGTCTGGCTCTGAACGAGTTGGACATGGGCAACAGCTGG
CTCGCTCCGGACGACGCGGCTTGCCAGGCAAACGATGAGCAGTTCGACAT
CAGCACGGTTGACCAGGCGTTCATGGGGGAGATCGAGAGCGCCACCAACT
GTGGGCAGATCACCGACATCAACGGGGCCTTCCAGCCATGCCTCGACTAC
GTGAACCCGGCGAACTACTTCGACGCATGCGTGTACGACATGGCAGCCGA
GAACGGGGAACATGAGATGCTCTGCAACGCCATGGAGGCGTACGCCGACG
CATGCGCAGCTGCCGGTGTCGTCATCGTCGGCTGGAGGGACGAGACTATG
TGTGCCGTTAACTGCCCACCCAACAGCCACTACTCCCTGGTAACAGCCTG
CCCAGCTACCTGCGCTAACCCTCTTGCGCCCATGCGCTGCCAGCGGACCA
CCCTGCCGGGCTGCCAGTGCGACGAGGGTTTCCTTCTGAGCGGGTCCCGG
TGCGTGCGAGCAGAGGAGTGCGGCTGCCTACAGGGAGACCAGTACTACGC
TCTCGGAGAGGAGTGGGGAGTGGAGGGTACGGGCCAGCTGTGTGTGTGCC
TGCCAGGAGGATCCATCCAGTGCGTGGCCGTTGACGGTGTGCGCCGTACA
CTACCCGTGTGCCTGAACAGTCAGGCGACCATCCGGCTGAGCGGAGACAT
GGTTCTGGTGGAGACCGACATGTGCGTCACCGTCAAGTACGACGGAGATC
ACCGGGTAGAGGTGGAGGTGCCGCTGGACTACGCTGGCCAGGTTGACGGT
CTGTGCGGGAACTTTAACGGTAACCCTGACGACGAGCTGCTGCGGCCCGA
CCAGAGTCTGGCTCTGAACGAGTTGGACATGGGCAACAGCTGGCTCGCTC
CGGACGACGCGGCTTGCCAGGCAAACGATGAGCAGTTCGACATCAGCACG
GTTGACCAGGCGTTCATGGGGGAGATCGAGAGCGCCACCAACTGTGGGCA
GATCACCGACATCAACGGGGCCTTCCAGCCATGCCTCGACTACGTGAACC
CGGCGAACTACTTCGACGCATGCGTGTACGACATGGCAGCCGAGAACGGG
GAACATGAGATGCTCTGCAACGCCATGGAGGCGTACGCCGACGCATGCGC
AGCTGCCGGTGTCGTCATCGTCGGCTGGAGGGACGAGACTATGTGTGCCG
TTAACTGCCCACCCAACAGCCACTACTCCCTGGTAACAGCCTGCCCAGCT
ACCTGCGCTAACCCTCTTGCGCCCATGCGCTGCCAGCGGACCACCCTGCC
GGGCTGCCAGTGCGACGAGGGTTTCCTTCTGAGCGGGTCCCGGTGCGTGC
GAGCAGAGGAGTGCGGCTGCCTACAGGGAGACCAGTACTACGCTCTCGGA
GAGGAGTGGGGAGTGGAGGGTACGGGCCAGCTGTGTGTGTGCCTGCCAGG
AGGATCCATCCAGTGCGTGGCCGTTGACGGTGTGCGCCGTACACTACCCG
TGTGCCTGAACAGTCAGGCGACCATCCGGCTGAGCGGAGACATGGTTCTG
GTGGAGACCGACATGTGCGTCACCGTCAAGTACGACGGAGATCACCGGGT
AGAGGTGGAGGTGCCGCTGGACTACGCTGGCCAGGTTGACGGTCTGTGCG
GGAACTTTAACGGTAACCCTGACGACGAGCTGCTGCGGCCCGACCAGAGT
CTGGCTCTGAACGAGTTGGACATGGGCAACAGCTGGCTCGCTCCGGACGA
CGCGGCTTGCCAGGCAAACGATGAGCAGTTCGACATCAGCACGGTTGACC
AGGCGTTCATGGGGGAGATCGAGAGCGCCACCAACTGTGGGCAGATCACC
GACATCAACGGGGCCTTCCAGCCATGCCTCGACTACGTGAACCCGGCGAA
CTACTTCGACGCATGCGTGTACGACATGGCAGCCGAGAACGGGGAACATG
AGATGCTCTGCAACGCCATGGAGGCGTACGCCGACGCATGCGCAGCTGCC
GGTGTCGTCATCGTCGGCTGGAGGGACGAGACTATGTGTGCCGTTAACTG
CCCACCCAACAGCCACTACTCCCTGGTAACAGCCTGCCCAGCTACCTGCG
CTAACCCTCTTGCGCCCATGCGCTGCCAGCGGACCACCCTGCCGGGCTGC
CAGTGCGACGAGGGTTTCCTTCTGAGCGGGTCCCGGTGCGTGCGAGCAGA
GGAGTGCGGCTGCCTACAGGGAGACCAGTACTACGCTCTCGGAGAGGAGT
GGGGAGTGGAGGGTACGGGCCAGCTGTGTGTGTGCCTGCCAGGAGGATCC
ATCCAGTGCGTGGCCGTTGACGGTGTGCGCCGTACACTACCCGTGTGCCT
GAACAGTCAGGCGACCATCCGGCTGAGCGGAGACATGGTTCTGGTGGAGA
CCGACATGTGCGTCACCGTCAAGTACGACGGAGATCACCGGGTAGAGGTG
GAGGTGCCGCTGGACTACGCTGGCCAGGTTGACGGTCTGTGCGGGAACTT
TAACGGTAACCCTGACGACGAGCTGCTGCGGCCCGACCAGAGTCTGGCTC
TGAACGAGTTGGACATGGGCAACAGCTGGCTCGCTCCGGACGACGCGGCT
TGCCAGGCAAACGATGAGCAGTTCGACATCAGCACGGTTGACCAGGCGTT
CATGGGGGAGATCGAGAGCGCCACCAACTGTGGGCAGATCACCGACATCA
ACGGGGCCTTCCAGCCATGCCTCGACTACGTGAACCCGGCGAACTACTTC
GACGCATGCGTGTACGACATGGCAGCCGAGAACGGGGAACATGAGATGCT
CTGCAACGCCATGGAGGCGTACGCCGACGCATGCGCAGCTGCCGGTGTCG
TCATCGTCGGCTGGAGGGACGAGACTATGTGTGCCGTTAACTGCCCACCC
AACAGCCACTACTCCCTGGTAACAGCCTGCCCAGCTACCTGCGCTAACCC
TCTTGCGCCCATGCGCTGCCAGCGGACCACCCTGCCGGGCTGCCAGTGCG
ACGAGGGTTTCCTTCTGAGCGGGTCCCGGTGCGTGCGAGCAGAGGAGTGC
GGCTGCCTACAGGGAGACCAGTACTACGCTCTCGGAGAGGAGTGGGGAGT
GGAGGGTACGGGCCAGCTGTGTGTGTGCCTGCCAGGAGGATCCATCCAGT
GCGTGGCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96943gene:BL96943Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96943_cuf13transcript:BL96943_cuf13-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96943_cuf13-E1BL96943_cuf13-E1-1564476830-212157Branchiostoma lanceolatumexon
BL96943_cuf13-E2BL96943_cuf13-E2-1564476830-212159Branchiostoma lanceolatumexon
BL96943_cuf13-E3BL96943_cuf13-E3-1564476830-212161Branchiostoma lanceolatumexon
BL96943_cuf13-E4BL96943_cuf13-E4-1564476830-212163Branchiostoma lanceolatumexon
BL96943_cuf13-E5BL96943_cuf13-E5-1564476830-212165Branchiostoma lanceolatumexon
BL96943_cuf13-E6BL96943_cuf13-E6-1564476830-212168Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000044genomeSc0000044:1008583..1012415 +
Properties
Property NameValue
Transcript idBL96943_cuf13
Biotypeprotein_coding