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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96886_cuf4 >transcript:BL96886_cuf4-protein ID=transcript:BL96886_cuf4-protein|Name=transcript:BL96886_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=226bp
MSSDITLYWGSGSVPCWRPMIVLEEKGLSGYNSKLVSFEKKEHKSDEIMK
INPRGQVPTFKHGDVVVNESMATCLYLENTFKNQGTKLLPDDPSQQALVL
QRFMETQNIMDKNNALVYYKFRTKQEDWDQGFIADKTKALAEELPLWEKY
LSQYGEGSFITGKDFTLADAALIPALAFLVRMKLPMKERFPHLASYYERV
KDRPSVQSTWPPHWKDTSGSDFLKDV Run BLAST on NCBI mRNA from alignment at Sc0000123:70666..74367+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96886_cuf4 ID=transcript:BL96886_cuf4|Name=transcript:BL96886_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3702bp|location=Sequence derived from alignment at Sc0000123:70666..74367+ (Branchiostoma lanceolatum)
GTCAAGCCTGATGGTTTCGCGCACGTGCACACAGATGATACACAGAGTAT
TATCGACTATCGTTAAGACGGTATTCATATAGACATTCAATAGAGATCGT
AGAGGATCGTCTTTTGTAGACTATTTATATTGCTCTAGTTATATCATATC
ATTTCAGATCGTAAAAGTACATTTAGTATATATAATATATGGGTCAATGG
ACTGAACCAGTGCTAACACTGACGTCACACTTTCACAAATAGGTCTAGTG
AGCAAGTGACCTACTAGTATTTTATGCCACTTGGTAGCAAATACAGCAAG
CAGTGAGTCAGTGGTTGGCATACCATATGTTATATCTGTATCTGCCATCT
GTGTTGATAATGAGATAGATGTGAAAGATGCATGTTTCGGTCTATTTTGA
TAAACCTCCTTCAATGATCTTCAATGGCATTTGAGTAAACCTATCAAAAG
GAAAAGTACTAGTATCACCTAATCGTCTTGGTTCAGCCCAGTGACCTTTA
ACCCGTTCTTACGGACGCAACCCTTTCACTACCTTGCAGCTGCTGTCGAG
TTCTGTGTTCAATAGTATCCGGTTAGGTACCAAATTAGCAGCTCGTGAGG
TAGCACCACGTCTACACTTTCGCTTGTTTGGTAACGTTACTTACGGAAAT
AACGGAATCATGTCTTCCGACATCACCCTGTACTGGGGCTCTGGCAGTGT
CCCCTGCTGGCGGCCCATGATCGTTCTGGAGGAGAAAGGGCTGTCAGGGT
ATAACAGCAAGCTGGTCTCATTTGAGAAGAAAGAGCACAAGTCTGACGAA
ATCATGAAGATTAACCCTCGCGGACAGGTTCCCACCTTCAAGCACGGGGA
CGTTGTTGTGAACGAGTCAATGGCCACCTGCTTGTATCTTGAGGTAAGCC
ATCCTTTGTGTATTAAATGAATGTAAAATTATGAGATAAATAATGACCCA
GGTGTCAGTACTAGCAAATCTAGATTTACTGACATCTGGGTTACGGAAGA
TCCTTGCTGTGTGCATGGATTGAAATGCTCAATGACCTGCTGTGGCCCCT
TCTCTTTGAAAGGAGGAGGAACGCCCGCCTCACCTTTTTGTACAAACTTG
TTAATAACCATATCAATATAAACGCAGACAGTCTACTTAAACCAGCTCAG
GGGCGCACCCGGGGTAGTCACCATCTTAAATTCCAAACTCTCAACGCCCG
GACAGACACAAACAAACACTCGTTCTTCCCCCGCACCATCCCACAGTGGA
ACGCCCTGCCTGGCACGGTTGTATCGGCTCCCACTGTTGAGTCATACCGT
GCCAGGCTGGAGGCCTGCCCGCCTTAGCCTGGGACCTCCTCCCCCCTGCT
TTGCCCCTCGCAGGGTTATCTGGGGGGTAACGATGATGATGATGAAATGA
TTGAGCGATAGATGGTCAATACATCCAAATACATGTATTCAGAACTTCCT
TTGCATATCTTATGATTGTGGTTCATATCTTGATGATCATGTGTGTACTC
TCATGTGAGCACTTTGTTCAAGGCTTTACCATGTTGCTGAGTCTAGCATG
CATCTTTAGTTTTTAACGAATAGTTAAGAATTAAAGTAACAGTTATTTTA
CTGTCATAAATATTCTCCAATTATACAGAACACCTTCAAGAACCAGGGAA
CCAAGCTCCTCCCAGATGACCCTTCCCAGCAGGCACTGGTGCTGCAGAGG
TTCATGGAGACACAGAACATCATGGACAAGAACAATGCCCTGGTTTATTA
CAAGTTCCGAACAAAACAAGAGGACTGGGACCAGGCAAGAATATACCTTT
CCTTAACAGATACTCTTTGCTCAAAGAATGATAGCCGTTTACTTCAGTTT
TCCTACTGCAAACATTGATCTGAAGGAATGATCTTTTGTATGAAACTTTG
GGAGTAGACTCAGCAGATGTAAAGGATATTGATGTCACTCCTGAAAAAAA
ATGCCATTTCTTATTCCTTGAGTAACTCTTTCCTTCCTGATCAACACGGA
TACATTGCAGAGAACACAAAATAAACTGTTGTCATTTCTATGCCTTCCAA
CATCTTCCTTTATCATCAACAGGGATTTATTGCAGACAAAACTAAGGCTT
TGGCTGAAGAGCTGCCATTGTGGGAAAAGTATCTGTCTCAGGTAAGTACG
GATCTGCCGTCAGTAATGTCAGATACATCTTATTCGACAGTTATTACATT
TTTAAATGTGCTACATGTAGTAACAATGCCATTTACTTGTGTATATTTAC
ATACTATATGCATATCTGGAAGACAAATCTGCCAGTGTAAACTTTGCAAA
GGGATGTCTTTAACATTGCAACTTTTGCGTTTGCAAGTGATCAGAATACA
ATTGGTCTCTTCAGTCCAAATTGTCATCCTCTTCCTGCATATTGTATCAG
CATAAAGCAAAATAGATAGATGATACCTCTCCATTTCATGATAACCAATG
ATGTGAGATCTCCCTATCGATTTCTGGTCTTACTGCAGTATGGAGAAGGA
TCCTTCATCACTGGGAAGGACTTCACCCTGGCTGATGCAGCGTTGATCCC
AGCACTTGCCTTTCTTGTGCGAATGAAGCTGCCTATGAAGGAACGTTTTC
CTCACCTGGCCAGCTACTATGAAAGGGTAGGGCTACAAGTACTTGAATGA
AAGCATTTGCATGAGCTTTGGTTGTCTCAGGACTTTCTCTAGCAACCATC
CCTCTGTCCCAGGATGGACGTTTGCTTGTTGGGACAGACAAAATATTCAC
CCAGTGCATTGTAAAATCAATATGAAGTTGATTTTCATAACACAGATTTA
ACAACGGAAATCAACAACACAGGCTCCTAAACAATGAGTGGGAAGAAAAA
AATTTAAAGCTGGAGACAGCCCTGGTTTTGTCTACTATGTAATTGTTATA
TTTTTTGTCCCGAGATAGTTTTGTCTCTGATAACTCACTATAAGCTATCT
ATTCCCTGGTAATGCTATTAGGTGAAGGACCGTCCTTCGGTGCAGTCAAC
ATGGCCACCACACTGGAAGGACACATCTGGGTCTGACTTTCTGAAGGATG
TGTGATGAGACAGTCTCACTACCAGACCATCAGCTGTCATCAAGGCTGTC
AACACTCGGATTGCTCAATAGCATAAAAAATCAATAAAAGGATAAGAAAA
TTGCTTCTTTTTTGTTTCTATTTTATCATGGGTATCATATGATAGCTGTG
GATGAGAATGCTGGGAGGTAATTATCAGGTCAAATTAATGTATATCTAAT
CCACATCCGATGATGTTATCATGTTGAATATGGCGGACCATGACCAGCAT
AGGAAAGTTTAGGATCATAGGGATTTTTTGAAATTATAGTTTTCAATTGC
CTCATCTCATCTATTCCTTAGCCTAAGTATTTGACAGTTGTTGCACCACT
GAAAATCTGATCATCAGTTTTCTCCATCCTTCTCATTTTCTGTTTATCTA
TTCATTCATTTTCTGGTCTTCTCATTGTTCTACCAAGTGTTATCCTGTTG
TTAGTATTCAATCCTGTTGAAAACAACAATGACAGCAAAATGAAACTGTG
GTCTGGTTGTCGTTTTTGAGTTTTCACTTTTCACTTTTCATGAGTATAAC
TCTATGTGATTAATTGCTATGTGAGTAATTTATCATCCTGGGTATAATGT
ACATATGCTCCTTTATTAGCTGTTAGTAGCTGGCTATTACTAACCAGGCA
AG Coding sequence (CDS) from alignment at Sc0000123:70666..74367+ >transcript:BL96886_cuf4 ID=transcript:BL96886_cuf4|Name=transcript:BL96886_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=3405bp|location=Sequence derived from alignment at Sc0000123:70666..74367+ (Branchiostoma lanceolatum)
ATGTCTTCCGACATCACCCTGTACTGGGGCTCTGGCAGTGTCCCCTGCTG
GCGGCCCATGATCGTTCTGGAGGAGAAAGGGCTGTCAGGGTATAACAGCA
AGCTGGTCTCATTTGAGAAGAAAGAGCACAAGTCTGACGAAATCATGAAG
ATTAACCCTCGCGGACAGGTTCCCACCTTCAAGCACGGGGACGTTGTTGT
GAACGAGTCAATGGCCACCTGCTTGTATCTTGAGAACACCTTCAAGAACC
AGGGAACCAAGCTCCTCCCAGATGACCCTTCCCAGCAGGCACTGGTGCTG
CAGAGGTTCATGGAGACACAGAACATCATGGACAAGAACAATGCCCTGGT
TTATTACAAGTTCCGAACAAAACAAGAGGACTGGGACCAGGGATTTATTG
CAGACAAAACTAAGGCTTTGGCTGAAGAGCTGCCATTGTGGGAAAAGTAT
CTGTCTCAGTATGGAGAAGGATCCTTCATCACTGGGAAGGACTTCACCCT
GGCTGATGCAGCGTTGATCCCAGCACTTGCCTTTCTTGTGCGAATGAAGC
TGCCTATGAAGGAACGTTTTCCTCACCTGGCCAGCTACTATGAAAGGGTG
AAGGACCGTCCTTCGGTGCAGTCAACATGGCCACCACACTGGAAGGACAC
ATCTGGGTCTGACTTTCTGAAGGATGTGTGAATGTCTTCCGACATCACCC
TGTACTGGGGCTCTGGCAGTGTCCCCTGCTGGCGGCCCATGATCGTTCTG
GAGGAGAAAGGGCTGTCAGGGTATAACAGCAAGCTGGTCTCATTTGAGAA
GAAAGAGCACAAGTCTGACGAAATCATGAAGATTAACCCTCGCGGACAGG
TTCCCACCTTCAAGCACGGGGACGTTGTTGTGAACGAGTCAATGGCCACC
TGCTTGTATCTTGAGAACACCTTCAAGAACCAGGGAACCAAGCTCCTCCC
AGATGACCCTTCCCAGCAGGCACTGGTGCTGCAGAGGTTCATGGAGACAC
AGAACATCATGGACAAGAACAATGCCCTGGTTTATTACAAGTTCCGAACA
AAACAAGAGGACTGGGACCAGGGATTTATTGCAGACAAAACTAAGGCTTT
GGCTGAAGAGCTGCCATTGTGGGAAAAGTATCTGTCTCAGTATGGAGAAG
GATCCTTCATCACTGGGAAGGACTTCACCCTGGCTGATGCAGCGTTGATC
CCAGCACTTGCCTTTCTTGTGCGAATGAAGCTGCCTATGAAGGAACGTTT
TCCTCACCTGGCCAGCTACTATGAAAGGGTGAAGGACCGTCCTTCGGTGC
AGTCAACATGGCCACCACACTGGAAGGACACATCTGGGTCTGACTTTCTG
AAGGATGTGTGAATGTCTTCCGACATCACCCTGTACTGGGGCTCTGGCAG
TGTCCCCTGCTGGCGGCCCATGATCGTTCTGGAGGAGAAAGGGCTGTCAG
GGTATAACAGCAAGCTGGTCTCATTTGAGAAGAAAGAGCACAAGTCTGAC
GAAATCATGAAGATTAACCCTCGCGGACAGGTTCCCACCTTCAAGCACGG
GGACGTTGTTGTGAACGAGTCAATGGCCACCTGCTTGTATCTTGAGAACA
CCTTCAAGAACCAGGGAACCAAGCTCCTCCCAGATGACCCTTCCCAGCAG
GCACTGGTGCTGCAGAGGTTCATGGAGACACAGAACATCATGGACAAGAA
CAATGCCCTGGTTTATTACAAGTTCCGAACAAAACAAGAGGACTGGGACC
AGGGATTTATTGCAGACAAAACTAAGGCTTTGGCTGAAGAGCTGCCATTG
TGGGAAAAGTATCTGTCTCAGTATGGAGAAGGATCCTTCATCACTGGGAA
GGACTTCACCCTGGCTGATGCAGCGTTGATCCCAGCACTTGCCTTTCTTG
TGCGAATGAAGCTGCCTATGAAGGAACGTTTTCCTCACCTGGCCAGCTAC
TATGAAAGGGTGAAGGACCGTCCTTCGGTGCAGTCAACATGGCCACCACA
CTGGAAGGACACATCTGGGTCTGACTTTCTGAAGGATGTGTGAATGTCTT
CCGACATCACCCTGTACTGGGGCTCTGGCAGTGTCCCCTGCTGGCGGCCC
ATGATCGTTCTGGAGGAGAAAGGGCTGTCAGGGTATAACAGCAAGCTGGT
CTCATTTGAGAAGAAAGAGCACAAGTCTGACGAAATCATGAAGATTAACC
CTCGCGGACAGGTTCCCACCTTCAAGCACGGGGACGTTGTTGTGAACGAG
TCAATGGCCACCTGCTTGTATCTTGAGAACACCTTCAAGAACCAGGGAAC
CAAGCTCCTCCCAGATGACCCTTCCCAGCAGGCACTGGTGCTGCAGAGGT
TCATGGAGACACAGAACATCATGGACAAGAACAATGCCCTGGTTTATTAC
AAGTTCCGAACAAAACAAGAGGACTGGGACCAGGGATTTATTGCAGACAA
AACTAAGGCTTTGGCTGAAGAGCTGCCATTGTGGGAAAAGTATCTGTCTC
AGTATGGAGAAGGATCCTTCATCACTGGGAAGGACTTCACCCTGGCTGAT
GCAGCGTTGATCCCAGCACTTGCCTTTCTTGTGCGAATGAAGCTGCCTAT
GAAGGAACGTTTTCCTCACCTGGCCAGCTACTATGAAAGGGTGAAGGACC
GTCCTTCGGTGCAGTCAACATGGCCACCACACTGGAAGGACACATCTGGG
TCTGACTTTCTGAAGGATGTGTGAATGTCTTCCGACATCACCCTGTACTG
GGGCTCTGGCAGTGTCCCCTGCTGGCGGCCCATGATCGTTCTGGAGGAGA
AAGGGCTGTCAGGGTATAACAGCAAGCTGGTCTCATTTGAGAAGAAAGAG
CACAAGTCTGACGAAATCATGAAGATTAACCCTCGCGGACAGGTTCCCAC
CTTCAAGCACGGGGACGTTGTTGTGAACGAGTCAATGGCCACCTGCTTGT
ATCTTGAGAACACCTTCAAGAACCAGGGAACCAAGCTCCTCCCAGATGAC
CCTTCCCAGCAGGCACTGGTGCTGCAGAGGTTCATGGAGACACAGAACAT
CATGGACAAGAACAATGCCCTGGTTTATTACAAGTTCCGAACAAAACAAG
AGGACTGGGACCAGGGATTTATTGCAGACAAAACTAAGGCTTTGGCTGAA
GAGCTGCCATTGTGGGAAAAGTATCTGTCTCAGTATGGAGAAGGATCCTT
CATCACTGGGAAGGACTTCACCCTGGCTGATGCAGCGTTGATCCCAGCAC
TTGCCTTTCTTGTGCGAATGAAGCTGCCTATGAAGGAACGTTTTCCTCAC
CTGGCCAGCTACTATGAAAGGGTGAAGGACCGTCCTTCGGTGCAGTCAAC
ATGGCCACCACACTGGAAGGACACATCTGGGTCTGACTTTCTGAAGGATG
TGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000123 | genome | Sc0000123:70666..74367 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96886_cuf4 |
| Biotype | protein_coding |
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