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transcript:BL96886_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96886_cuf4
Unique Nametranscript:BL96886_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96886_cuf4

>transcript:BL96886_cuf4-protein ID=transcript:BL96886_cuf4-protein|Name=transcript:BL96886_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=226bp
MSSDITLYWGSGSVPCWRPMIVLEEKGLSGYNSKLVSFEKKEHKSDEIMK
INPRGQVPTFKHGDVVVNESMATCLYLENTFKNQGTKLLPDDPSQQALVL
QRFMETQNIMDKNNALVYYKFRTKQEDWDQGFIADKTKALAEELPLWEKY
LSQYGEGSFITGKDFTLADAALIPALAFLVRMKLPMKERFPHLASYYERV
KDRPSVQSTWPPHWKDTSGSDFLKDV
Run BLAST on NCBI

mRNA from alignment at Sc0000123:70666..74367+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96886_cuf4 ID=transcript:BL96886_cuf4|Name=transcript:BL96886_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3702bp|location=Sequence derived from alignment at Sc0000123:70666..74367+ (Branchiostoma lanceolatum)
GTCAAGCCTGATGGTTTCGCGCACGTGCACACAGATGATACACAGAGTAT TATCGACTATCGTTAAGACGGTATTCATATAGACATTCAATAGAGATCGT AGAGGATCGTCTTTTGTAGACTATTTATATTGCTCTAGTTATATCATATC ATTTCAGATCGTAAAAGTACATTTAGTATATATAATATATGGGTCAATGG ACTGAACCAGTGCTAACACTGACGTCACACTTTCACAAATAGGTCTAGTG AGCAAGTGACCTACTAGTATTTTATGCCACTTGGTAGCAAATACAGCAAG CAGTGAGTCAGTGGTTGGCATACCATATGTTATATCTGTATCTGCCATCT GTGTTGATAATGAGATAGATGTGAAAGATGCATGTTTCGGTCTATTTTGA TAAACCTCCTTCAATGATCTTCAATGGCATTTGAGTAAACCTATCAAAAG GAAAAGTACTAGTATCACCTAATCGTCTTGGTTCAGCCCAGTGACCTTTA ACCCGTTCTTACGGACGCAACCCTTTCACTACCTTGCAGCTGCTGTCGAG TTCTGTGTTCAATAGTATCCGGTTAGGTACCAAATTAGCAGCTCGTGAGG TAGCACCACGTCTACACTTTCGCTTGTTTGGTAACGTTACTTACGGAAAT AACGGAATCATGTCTTCCGACATCACCCTGTACTGGGGCTCTGGCAGTGT CCCCTGCTGGCGGCCCATGATCGTTCTGGAGGAGAAAGGGCTGTCAGGGT ATAACAGCAAGCTGGTCTCATTTGAGAAGAAAGAGCACAAGTCTGACGAA ATCATGAAGATTAACCCTCGCGGACAGGTTCCCACCTTCAAGCACGGGGA CGTTGTTGTGAACGAGTCAATGGCCACCTGCTTGTATCTTGAGGTAAGCC ATCCTTTGTGTATTAAATGAATGTAAAATTATGAGATAAATAATGACCCA GGTGTCAGTACTAGCAAATCTAGATTTACTGACATCTGGGTTACGGAAGA TCCTTGCTGTGTGCATGGATTGAAATGCTCAATGACCTGCTGTGGCCCCT TCTCTTTGAAAGGAGGAGGAACGCCCGCCTCACCTTTTTGTACAAACTTG TTAATAACCATATCAATATAAACGCAGACAGTCTACTTAAACCAGCTCAG GGGCGCACCCGGGGTAGTCACCATCTTAAATTCCAAACTCTCAACGCCCG GACAGACACAAACAAACACTCGTTCTTCCCCCGCACCATCCCACAGTGGA ACGCCCTGCCTGGCACGGTTGTATCGGCTCCCACTGTTGAGTCATACCGT GCCAGGCTGGAGGCCTGCCCGCCTTAGCCTGGGACCTCCTCCCCCCTGCT TTGCCCCTCGCAGGGTTATCTGGGGGGTAACGATGATGATGATGAAATGA TTGAGCGATAGATGGTCAATACATCCAAATACATGTATTCAGAACTTCCT TTGCATATCTTATGATTGTGGTTCATATCTTGATGATCATGTGTGTACTC TCATGTGAGCACTTTGTTCAAGGCTTTACCATGTTGCTGAGTCTAGCATG CATCTTTAGTTTTTAACGAATAGTTAAGAATTAAAGTAACAGTTATTTTA CTGTCATAAATATTCTCCAATTATACAGAACACCTTCAAGAACCAGGGAA CCAAGCTCCTCCCAGATGACCCTTCCCAGCAGGCACTGGTGCTGCAGAGG TTCATGGAGACACAGAACATCATGGACAAGAACAATGCCCTGGTTTATTA CAAGTTCCGAACAAAACAAGAGGACTGGGACCAGGCAAGAATATACCTTT CCTTAACAGATACTCTTTGCTCAAAGAATGATAGCCGTTTACTTCAGTTT TCCTACTGCAAACATTGATCTGAAGGAATGATCTTTTGTATGAAACTTTG GGAGTAGACTCAGCAGATGTAAAGGATATTGATGTCACTCCTGAAAAAAA ATGCCATTTCTTATTCCTTGAGTAACTCTTTCCTTCCTGATCAACACGGA TACATTGCAGAGAACACAAAATAAACTGTTGTCATTTCTATGCCTTCCAA CATCTTCCTTTATCATCAACAGGGATTTATTGCAGACAAAACTAAGGCTT TGGCTGAAGAGCTGCCATTGTGGGAAAAGTATCTGTCTCAGGTAAGTACG GATCTGCCGTCAGTAATGTCAGATACATCTTATTCGACAGTTATTACATT TTTAAATGTGCTACATGTAGTAACAATGCCATTTACTTGTGTATATTTAC ATACTATATGCATATCTGGAAGACAAATCTGCCAGTGTAAACTTTGCAAA GGGATGTCTTTAACATTGCAACTTTTGCGTTTGCAAGTGATCAGAATACA ATTGGTCTCTTCAGTCCAAATTGTCATCCTCTTCCTGCATATTGTATCAG CATAAAGCAAAATAGATAGATGATACCTCTCCATTTCATGATAACCAATG ATGTGAGATCTCCCTATCGATTTCTGGTCTTACTGCAGTATGGAGAAGGA TCCTTCATCACTGGGAAGGACTTCACCCTGGCTGATGCAGCGTTGATCCC AGCACTTGCCTTTCTTGTGCGAATGAAGCTGCCTATGAAGGAACGTTTTC CTCACCTGGCCAGCTACTATGAAAGGGTAGGGCTACAAGTACTTGAATGA AAGCATTTGCATGAGCTTTGGTTGTCTCAGGACTTTCTCTAGCAACCATC CCTCTGTCCCAGGATGGACGTTTGCTTGTTGGGACAGACAAAATATTCAC CCAGTGCATTGTAAAATCAATATGAAGTTGATTTTCATAACACAGATTTA ACAACGGAAATCAACAACACAGGCTCCTAAACAATGAGTGGGAAGAAAAA AATTTAAAGCTGGAGACAGCCCTGGTTTTGTCTACTATGTAATTGTTATA TTTTTTGTCCCGAGATAGTTTTGTCTCTGATAACTCACTATAAGCTATCT ATTCCCTGGTAATGCTATTAGGTGAAGGACCGTCCTTCGGTGCAGTCAAC ATGGCCACCACACTGGAAGGACACATCTGGGTCTGACTTTCTGAAGGATG TGTGATGAGACAGTCTCACTACCAGACCATCAGCTGTCATCAAGGCTGTC AACACTCGGATTGCTCAATAGCATAAAAAATCAATAAAAGGATAAGAAAA TTGCTTCTTTTTTGTTTCTATTTTATCATGGGTATCATATGATAGCTGTG GATGAGAATGCTGGGAGGTAATTATCAGGTCAAATTAATGTATATCTAAT CCACATCCGATGATGTTATCATGTTGAATATGGCGGACCATGACCAGCAT AGGAAAGTTTAGGATCATAGGGATTTTTTGAAATTATAGTTTTCAATTGC CTCATCTCATCTATTCCTTAGCCTAAGTATTTGACAGTTGTTGCACCACT GAAAATCTGATCATCAGTTTTCTCCATCCTTCTCATTTTCTGTTTATCTA TTCATTCATTTTCTGGTCTTCTCATTGTTCTACCAAGTGTTATCCTGTTG TTAGTATTCAATCCTGTTGAAAACAACAATGACAGCAAAATGAAACTGTG GTCTGGTTGTCGTTTTTGAGTTTTCACTTTTCACTTTTCATGAGTATAAC TCTATGTGATTAATTGCTATGTGAGTAATTTATCATCCTGGGTATAATGT ACATATGCTCCTTTATTAGCTGTTAGTAGCTGGCTATTACTAACCAGGCA AG

Coding sequence (CDS) from alignment at Sc0000123:70666..74367+

>transcript:BL96886_cuf4 ID=transcript:BL96886_cuf4|Name=transcript:BL96886_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=3405bp|location=Sequence derived from alignment at Sc0000123:70666..74367+ (Branchiostoma lanceolatum)
ATGTCTTCCGACATCACCCTGTACTGGGGCTCTGGCAGTGTCCCCTGCTG
GCGGCCCATGATCGTTCTGGAGGAGAAAGGGCTGTCAGGGTATAACAGCA
AGCTGGTCTCATTTGAGAAGAAAGAGCACAAGTCTGACGAAATCATGAAG
ATTAACCCTCGCGGACAGGTTCCCACCTTCAAGCACGGGGACGTTGTTGT
GAACGAGTCAATGGCCACCTGCTTGTATCTTGAGAACACCTTCAAGAACC
AGGGAACCAAGCTCCTCCCAGATGACCCTTCCCAGCAGGCACTGGTGCTG
CAGAGGTTCATGGAGACACAGAACATCATGGACAAGAACAATGCCCTGGT
TTATTACAAGTTCCGAACAAAACAAGAGGACTGGGACCAGGGATTTATTG
CAGACAAAACTAAGGCTTTGGCTGAAGAGCTGCCATTGTGGGAAAAGTAT
CTGTCTCAGTATGGAGAAGGATCCTTCATCACTGGGAAGGACTTCACCCT
GGCTGATGCAGCGTTGATCCCAGCACTTGCCTTTCTTGTGCGAATGAAGC
TGCCTATGAAGGAACGTTTTCCTCACCTGGCCAGCTACTATGAAAGGGTG
AAGGACCGTCCTTCGGTGCAGTCAACATGGCCACCACACTGGAAGGACAC
ATCTGGGTCTGACTTTCTGAAGGATGTGTGAATGTCTTCCGACATCACCC
TGTACTGGGGCTCTGGCAGTGTCCCCTGCTGGCGGCCCATGATCGTTCTG
GAGGAGAAAGGGCTGTCAGGGTATAACAGCAAGCTGGTCTCATTTGAGAA
GAAAGAGCACAAGTCTGACGAAATCATGAAGATTAACCCTCGCGGACAGG
TTCCCACCTTCAAGCACGGGGACGTTGTTGTGAACGAGTCAATGGCCACC
TGCTTGTATCTTGAGAACACCTTCAAGAACCAGGGAACCAAGCTCCTCCC
AGATGACCCTTCCCAGCAGGCACTGGTGCTGCAGAGGTTCATGGAGACAC
AGAACATCATGGACAAGAACAATGCCCTGGTTTATTACAAGTTCCGAACA
AAACAAGAGGACTGGGACCAGGGATTTATTGCAGACAAAACTAAGGCTTT
GGCTGAAGAGCTGCCATTGTGGGAAAAGTATCTGTCTCAGTATGGAGAAG
GATCCTTCATCACTGGGAAGGACTTCACCCTGGCTGATGCAGCGTTGATC
CCAGCACTTGCCTTTCTTGTGCGAATGAAGCTGCCTATGAAGGAACGTTT
TCCTCACCTGGCCAGCTACTATGAAAGGGTGAAGGACCGTCCTTCGGTGC
AGTCAACATGGCCACCACACTGGAAGGACACATCTGGGTCTGACTTTCTG
AAGGATGTGTGAATGTCTTCCGACATCACCCTGTACTGGGGCTCTGGCAG
TGTCCCCTGCTGGCGGCCCATGATCGTTCTGGAGGAGAAAGGGCTGTCAG
GGTATAACAGCAAGCTGGTCTCATTTGAGAAGAAAGAGCACAAGTCTGAC
GAAATCATGAAGATTAACCCTCGCGGACAGGTTCCCACCTTCAAGCACGG
GGACGTTGTTGTGAACGAGTCAATGGCCACCTGCTTGTATCTTGAGAACA
CCTTCAAGAACCAGGGAACCAAGCTCCTCCCAGATGACCCTTCCCAGCAG
GCACTGGTGCTGCAGAGGTTCATGGAGACACAGAACATCATGGACAAGAA
CAATGCCCTGGTTTATTACAAGTTCCGAACAAAACAAGAGGACTGGGACC
AGGGATTTATTGCAGACAAAACTAAGGCTTTGGCTGAAGAGCTGCCATTG
TGGGAAAAGTATCTGTCTCAGTATGGAGAAGGATCCTTCATCACTGGGAA
GGACTTCACCCTGGCTGATGCAGCGTTGATCCCAGCACTTGCCTTTCTTG
TGCGAATGAAGCTGCCTATGAAGGAACGTTTTCCTCACCTGGCCAGCTAC
TATGAAAGGGTGAAGGACCGTCCTTCGGTGCAGTCAACATGGCCACCACA
CTGGAAGGACACATCTGGGTCTGACTTTCTGAAGGATGTGTGAATGTCTT
CCGACATCACCCTGTACTGGGGCTCTGGCAGTGTCCCCTGCTGGCGGCCC
ATGATCGTTCTGGAGGAGAAAGGGCTGTCAGGGTATAACAGCAAGCTGGT
CTCATTTGAGAAGAAAGAGCACAAGTCTGACGAAATCATGAAGATTAACC
CTCGCGGACAGGTTCCCACCTTCAAGCACGGGGACGTTGTTGTGAACGAG
TCAATGGCCACCTGCTTGTATCTTGAGAACACCTTCAAGAACCAGGGAAC
CAAGCTCCTCCCAGATGACCCTTCCCAGCAGGCACTGGTGCTGCAGAGGT
TCATGGAGACACAGAACATCATGGACAAGAACAATGCCCTGGTTTATTAC
AAGTTCCGAACAAAACAAGAGGACTGGGACCAGGGATTTATTGCAGACAA
AACTAAGGCTTTGGCTGAAGAGCTGCCATTGTGGGAAAAGTATCTGTCTC
AGTATGGAGAAGGATCCTTCATCACTGGGAAGGACTTCACCCTGGCTGAT
GCAGCGTTGATCCCAGCACTTGCCTTTCTTGTGCGAATGAAGCTGCCTAT
GAAGGAACGTTTTCCTCACCTGGCCAGCTACTATGAAAGGGTGAAGGACC
GTCCTTCGGTGCAGTCAACATGGCCACCACACTGGAAGGACACATCTGGG
TCTGACTTTCTGAAGGATGTGTGAATGTCTTCCGACATCACCCTGTACTG
GGGCTCTGGCAGTGTCCCCTGCTGGCGGCCCATGATCGTTCTGGAGGAGA
AAGGGCTGTCAGGGTATAACAGCAAGCTGGTCTCATTTGAGAAGAAAGAG
CACAAGTCTGACGAAATCATGAAGATTAACCCTCGCGGACAGGTTCCCAC
CTTCAAGCACGGGGACGTTGTTGTGAACGAGTCAATGGCCACCTGCTTGT
ATCTTGAGAACACCTTCAAGAACCAGGGAACCAAGCTCCTCCCAGATGAC
CCTTCCCAGCAGGCACTGGTGCTGCAGAGGTTCATGGAGACACAGAACAT
CATGGACAAGAACAATGCCCTGGTTTATTACAAGTTCCGAACAAAACAAG
AGGACTGGGACCAGGGATTTATTGCAGACAAAACTAAGGCTTTGGCTGAA
GAGCTGCCATTGTGGGAAAAGTATCTGTCTCAGTATGGAGAAGGATCCTT
CATCACTGGGAAGGACTTCACCCTGGCTGATGCAGCGTTGATCCCAGCAC
TTGCCTTTCTTGTGCGAATGAAGCTGCCTATGAAGGAACGTTTTCCTCAC
CTGGCCAGCTACTATGAAAGGGTGAAGGACCGTCCTTCGGTGCAGTCAAC
ATGGCCACCACACTGGAAGGACACATCTGGGTCTGACTTTCTGAAGGATG
TGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96886gene:BL96886Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96886_cuf4transcript:BL96886_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96886_cuf4-E1BL96886_cuf4-E1-1564476830-325218Branchiostoma lanceolatumexon
BL96886_cuf4-E2BL96886_cuf4-E2-1564476830-325220Branchiostoma lanceolatumexon
BL96886_cuf4-E3BL96886_cuf4-E3-1564476830-325222Branchiostoma lanceolatumexon
BL96886_cuf4-E4BL96886_cuf4-E4-1564476830-325224Branchiostoma lanceolatumexon
BL96886_cuf4-E5BL96886_cuf4-E5-1564476830-325227Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000123genomeSc0000123:70666..74367 +
Properties
Property NameValue
Transcript idBL96886_cuf4
Biotypeprotein_coding