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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96866_cuf23 >transcript:BL96866_cuf23-protein ID=transcript:BL96866_cuf23-protein|Name=transcript:BL96866_cuf23|organism=Branchiostoma lanceolatum|type=polypeptide|length=221bp
MPQPDEPMYSSQQINIPPELPDILKQFTKAAIRTQPKDVLQWSAAYFRAL
SKGETLPVKERLEMPTATQKTDTGLTPGLLKVLHKQLSPQGTVQLSVLEQ
KWKEVCLPQEQMDEIMKVGTFSDNIEWIKFFALACSSLAGNITQAMKIVC
EILTSDPEGGAAKIDFNTFKELYTYLAQIDGEIGQVHIDGVLSYLQYDVD
KQEGMVMPRNFLSQDCPKLGN Run BLAST on NCBI mRNA from alignment at Sc0000007:4360152..4364331- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96866_cuf23 ID=transcript:BL96866_cuf23|Name=transcript:BL96866_cuf23|organism=Branchiostoma lanceolatum|type=mRNA|length=4180bp|location=Sequence derived from alignment at Sc0000007:4360152..4364331- (Branchiostoma lanceolatum)
CTTTCATCTACCTGCGCGGTAGAGCTGCGCGAAGACCGTTGCTACGAACA
ACAACCCTGAGAGGCAACAGAGACATCTGAACGGTTTAAGACATTTCTAC
ATCTTTTAAGACACAACAGGGCAGTCTACAAGGTACGAGACTTCCAATTT
ACTTCTTAGGAGGGATTGTAGATAAATAGATACGTCTATGACCGTGTTTC
CTGAACCTAGGGAGAGGTGAGGCTCCGTTGTTTTGAACCTGTTTATTAAA
TTATGGGTCGCAGATTTTCACGTTGTTCGAAGAAATATGNATTTATATAC
ATGATTGTCTCATGTTTGTATCAACAGAAACTATACAAAATATAGCTAAT
TAGAAAATACTGTCTTAATGTTACCTAGTAAGTTTATTGTTGGAAGCACC
TTAAGAACAGTTGTCATTACATTTTTTGGGTTCAAATTCAAATTGTTGCC
AAAAAGATGATAAAAAATGAGACTGAAAAATTAGCAAAATATGCTAATCA
GAAATTTATGAGATTAAAAAAACTAAGTTCCATTTGACCACCATTTTTGT
AGCCTCACCAGCCCATAGAATGTAACAAATCCTATGATCATCCCAAGAAT
TTAATCAGCTTACATTCTCATCACACTGACATGCTTTACTGTCAATCACC
ATTAATTATTCATACCCTAGTAAAACAAGGTATGTTTGTGCGTCTTTGCT
GAAAATATTTCATGTAATATTTTTACGTTTGTTCCGCCAGCAGAGGTTCC
ACCATGCCGCAGCCGGATGAGCCCATGTACAGTTCACAACAGATCAACAT
CCCTCCTGAACTACCCGACATCCTCAAACAGTTCACCAAGGCCGCCATCA
GGACACAACCCAAGGACGTGCTCCAGTGGTCCGCTGCGTACGTATTGATT
ACATTTGACTATCTATATCTTTTCTGTGAATCCCACTTAGAAGCTAAAGG
TTCTGGGTTCGAAACCTGACAGACACCAATGTTGTGTCCTTGGGAAAGGC
ACTTTACACATATTCCTCAGGATCAGGTGAAAACGAGTAGCAAGCTTTAG
TTAGGGTCGTCTTCTCAGATGGGACGTAAAGCCAGCTGCAGAGGTCCCAT
GTTTGAGAAGAGCCACACCTTGTGGACGTGAAAGATCCACCACACTTATG
GAAAAGAGTAGGGGTCCTTCCCAATGTAAGTGGATCAAACCTTACAGTCT
GGTTTCGCAGGTTGACATCTTGAAAAAGCAATTTGCCATATCAACACTTC
CACAAATGTAGTAAGTCCCTATAGATGAATTAGATAGATTTTTCATGTAA
TCCTAAAACCCTTATATCTGTTCAGCTTTGTGCCTTGACAAAATGTTAAT
TACCTCGCTTGTTACTGTAAAACCTAATATGAGAATTGATATTGAAATGT
CCACTGTTTATGTTTTAATATTGCAGGTACTTCCGAGCACTTTCCAAAGG
AGAGACCCTTCCTGTGAAGGAAAGACTAGAGATGCCCACAGCCACACAGA
AAACAGACACTGGGCTCACGCCTGGACTACTGAAGGTCTTACACAAGCAG
GTAAGCAAAAAAACAGGCACTGGAGAAACAATCCAACATTTACAGGTTAT
GACTTTTTATTTGAAAGTCTCACATACATATGTAGCTGTCTACAACCTTG
AATGGTTGCTTCTCCCCCTTTAACACATAATTGATCTTGAACGTTTGCCC
CCCTTAAAGTAAAGTGACCCAGGCATCTTGATAAGACGCAAAGGGGTGGT
GCCCATTTCTATAGCCCTTGGGCCACACATATGTGCAAGTCACTACAGCA
GGGGGCTAGTCCACTGGTAGAGATGTGTGTTTAACTGCCATACCCCCAAA
AGCTGAGTGCTAAGCAGAGAAAGCAGTATGTACCAATTTTAAAGTCTTTG
GAATGACCCGTCCAGGGTTCAACTCACAACCTTCAGTGTCCAAGGCGAAC
ACTCTACCAACTAGGCCATTGCCCCCCTCCTCCTCTTTAATATGGTTGAT
GTCACTGTTTCCCCCTCCCCCTTTAACAGGATTAACCTTGACCTTGTCTG
CCCCCCTCCCCAGCTGAGCCCCCAGGGTACCGTGCAGCTGTCTGTCCTGG
AGCAGAAGTGGAAGGAGGTGTGTCTGCCCCAGGAACAGATGGATGAGATC
ATGAAAGTGGGAACCTTCTCCGACAATATCGAGTGGATCAAGTTCTTCGC
TCTGGCGTGTTCTTCTCTTGCAGGGGTGGGTATCAATGACTGCTTAGATA
TCCAAGCAGGCTTATTTTTTAAATACGTTGATGAAGGTTAGACATCCAGG
TAGTAAGATACGCCAAAAATAGTTACTCAAGCAACTGGATAAAATTTTGA
AACAGTCAGACGTTTCAGACAGCATCCGCTGTCTTTCATCAGTGACTAAC
GATAGGACTGGGAAACCTTCCACTCATTTTCAATTAAGTATTCGTTCCGG
GGTTAGGCAGCAGGGAGAAGGTTAATGACCTGAATTTCTGTTACTTAAAA
TCTAGAAACTTACACAGTGGTTTTATTTTTGCGTTTCAAATGTAATTAGT
ATTACAGCTACAAAATTTTTTCAAGTGTGAGTTTAAAACAAGCTTTTCTG
AATCCCACTGTGAAATTAACCACCATTACAGTAAATGAACTGACTGTATA
CAAAAAGTTTTAGAGATCATGAAATAAGAATTAGAATATAGAGTATTGGA
GATTCTTTTTACACAGCCGGTAATTCTCACCTGCTGACGTTTCAACATGA
AATTATGAAATAATGAAATACAACCTGATGAAATTATTTTCGGAAGAATT
AGAATAGTCCAACCAATAATAGTGCCAGATAAATAGGGAGAACACATTTC
ATTTTCAAATCGAATAGGGAAGGAGATCTAAAAGTAGTTCCTCATCAATT
CAATGCTGATGACTTTACCTTTACCCTGCTGCTTGATCCCATAACCAATA
TAAATTCAGTGCCAAACAGGTACTTTAGCAGACTGAAGTTTAACCCCTGC
ACCTGTTCCATTATTCTAAGAACATTTCACAAGCCATGAAAACTTTGATA
CAAATTCAGTGCCAGCTGGCTACCTTAGCAGACTGAAAGTTAACTCTGTT
CATTATTGACATTAGAATATCACACAAGCCATGAAGATTGTGTGCGAGAT
CCTGACCTCTGACCCTGAGGGCGGGGCGGCGAAGATCGACTTCAACACAT
TCAAGGAGCTGTACACGTACCTCGCACAGATCGACGGAGAGATCGGACAG
GTTCACATCGACGGCGTCTTGTCGTATCTCCAGTACGACGTGTAAGTACT
ACTCTAAATTCTTATTGTTTTTCTTGAAGACTTAACACCCAAAATTCATA
AGGGAAGAATCACTGATACCTGGATATATAGATTGTAATTGAAGTATGAT
TTATTACAGTTTCACCACAAATTGGAAAGGTTGAGCTGTGTTATTAATAC
TTAGTTGTACACATCATTATGTTCATATGTACATGACTACCTCATAATTA
TCTAAGTGATGATGATAGTGAACGTGTTTACAATTGTGTGATATCTAACA
ATTATTCTATTGTTTATTTCTTGCAGTGACAAACAAGAAGGAATGGTCAT
GCCCAGAAACTTTCTCAGCCAAGACTGTCCAAAACTTGGCAACTGATTAT
AGAAATTACAACTTTGACAAGATAAAAAGTATAGTATGTGGTTGATATGT
ATATACACAGGCAGATACATCTTAGTCAGCATTTCAGATGTAAAATGGCT
ACAAATACAACACATGTACAGGGCATACTCCCAGTTGTTTTTAAAGCTAT
TCTATGGTAAAACACCACTTTGTAATATTAAATGAGCACTTTTTACATAT
AAGGACAGAATTCTTTATTTTGTAAATGTGTGTTTGTGTCATACAGTCCG
AGCCCATTGCAGGTAATTTTTGTTCAAGACAAGGAAATGTTTATACATAT
TTGGGAGAAGAGTATGTTCACATAGTACTTTTGTTTTCTATTTTTGTTTG
AAAAAGTATCTCCATCAATATGATAAGATGGTTATTGATATGACTGGATA
TAGTCATTCATAACTGGCGTGGAAGAGTAATTTAATTGTAGACTAAGGTT
GTATATTTCCTGGACAATGTATGATAATGTTAATCTATGGCTATGTACAA
AGCAGTGACTTTCTGTTAGCTAGAATGTGN Coding sequence (CDS) from alignment at Sc0000007:4360152..4364331- >transcript:BL96866_cuf23 ID=transcript:BL96866_cuf23|Name=transcript:BL96866_cuf23|organism=Branchiostoma lanceolatum|type=CDS|length=3330bp|location=Sequence derived from alignment at Sc0000007:4360152..4364331- (Branchiostoma lanceolatum)
ATGCCGCAGCCGGATGAGCCCATGTACAGTTCACAACAGATCAACATCCC
TCCTGAACTACCCGACATCCTCAAACAGTTCACCAAGGCCGCCATCAGGA
CACAACCCAAGGACGTGCTCCAGTGGTCCGCTGCGTACTTCCGAGCACTT
TCCAAAGGAGAGACCCTTCCTGTGAAGGAAAGACTAGAGATGCCCACAGC
CACACAGAAAACAGACACTGGGCTCACGCCTGGACTACTGAAGGTCTTAC
ACAAGCAGCTGAGCCCCCAGGGTACCGTGCAGCTGTCTGTCCTGGAGCAG
AAGTGGAAGGAGGTGTGTCTGCCCCAGGAACAGATGGATGAGATCATGAA
AGTGGGAACCTTCTCCGACAATATCGAGTGGATCAAGTTCTTCGCTCTGG
CGTGTTCTTCTCTTGCAGGGAATATCACACAAGCCATGAAGATTGTGTGC
GAGATCCTGACCTCTGACCCTGAGGGCGGGGCGGCGAAGATCGACTTCAA
CACATTCAAGGAGCTGTACACGTACCTCGCACAGATCGACGGAGAGATCG
GACAGGTTCACATCGACGGCGTCTTGTCGTATCTCCAGTACGACGTTGAC
AAACAAGAAGGAATGGTCATGCCCAGAAACTTTCTCAGCCAAGACTGTCC
AAAACTTGGCAACTGAATGCCGCAGCCGGATGAGCCCATGTACAGTTCAC
AACAGATCAACATCCCTCCTGAACTACCCGACATCCTCAAACAGTTCACC
AAGGCCGCCATCAGGACACAACCCAAGGACGTGCTCCAGTGGTCCGCTGC
GTACTTCCGAGCACTTTCCAAAGGAGAGACCCTTCCTGTGAAGGAAAGAC
TAGAGATGCCCACAGCCACACAGAAAACAGACACTGGGCTCACGCCTGGA
CTACTGAAGGTCTTACACAAGCAGCTGAGCCCCCAGGGTACCGTGCAGCT
GTCTGTCCTGGAGCAGAAGTGGAAGGAGGTGTGTCTGCCCCAGGAACAGA
TGGATGAGATCATGAAAGTGGGAACCTTCTCCGACAATATCGAGTGGATC
AAGTTCTTCGCTCTGGCGTGTTCTTCTCTTGCAGGGAATATCACACAAGC
CATGAAGATTGTGTGCGAGATCCTGACCTCTGACCCTGAGGGCGGGGCGG
CGAAGATCGACTTCAACACATTCAAGGAGCTGTACACGTACCTCGCACAG
ATCGACGGAGAGATCGGACAGGTTCACATCGACGGCGTCTTGTCGTATCT
CCAGTACGACGTTGACAAACAAGAAGGAATGGTCATGCCCAGAAACTTTC
TCAGCCAAGACTGTCCAAAACTTGGCAACTGAATGCCGCAGCCGGATGAG
CCCATGTACAGTTCACAACAGATCAACATCCCTCCTGAACTACCCGACAT
CCTCAAACAGTTCACCAAGGCCGCCATCAGGACACAACCCAAGGACGTGC
TCCAGTGGTCCGCTGCGTACTTCCGAGCACTTTCCAAAGGAGAGACCCTT
CCTGTGAAGGAAAGACTAGAGATGCCCACAGCCACACAGAAAACAGACAC
TGGGCTCACGCCTGGACTACTGAAGGTCTTACACAAGCAGCTGAGCCCCC
AGGGTACCGTGCAGCTGTCTGTCCTGGAGCAGAAGTGGAAGGAGGTGTGT
CTGCCCCAGGAACAGATGGATGAGATCATGAAAGTGGGAACCTTCTCCGA
CAATATCGAGTGGATCAAGTTCTTCGCTCTGGCGTGTTCTTCTCTTGCAG
GGAATATCACACAAGCCATGAAGATTGTGTGCGAGATCCTGACCTCTGAC
CCTGAGGGCGGGGCGGCGAAGATCGACTTCAACACATTCAAGGAGCTGTA
CACGTACCTCGCACAGATCGACGGAGAGATCGGACAGGTTCACATCGACG
GCGTCTTGTCGTATCTCCAGTACGACGTTGACAAACAAGAAGGAATGGTC
ATGCCCAGAAACTTTCTCAGCCAAGACTGTCCAAAACTTGGCAACTGAAT
GCCGCAGCCGGATGAGCCCATGTACAGTTCACAACAGATCAACATCCCTC
CTGAACTACCCGACATCCTCAAACAGTTCACCAAGGCCGCCATCAGGACA
CAACCCAAGGACGTGCTCCAGTGGTCCGCTGCGTACTTCCGAGCACTTTC
CAAAGGAGAGACCCTTCCTGTGAAGGAAAGACTAGAGATGCCCACAGCCA
CACAGAAAACAGACACTGGGCTCACGCCTGGACTACTGAAGGTCTTACAC
AAGCAGCTGAGCCCCCAGGGTACCGTGCAGCTGTCTGTCCTGGAGCAGAA
GTGGAAGGAGGTGTGTCTGCCCCAGGAACAGATGGATGAGATCATGAAAG
TGGGAACCTTCTCCGACAATATCGAGTGGATCAAGTTCTTCGCTCTGGCG
TGTTCTTCTCTTGCAGGGAATATCACACAAGCCATGAAGATTGTGTGCGA
GATCCTGACCTCTGACCCTGAGGGCGGGGCGGCGAAGATCGACTTCAACA
CATTCAAGGAGCTGTACACGTACCTCGCACAGATCGACGGAGAGATCGGA
CAGGTTCACATCGACGGCGTCTTGTCGTATCTCCAGTACGACGTTGACAA
ACAAGAAGGAATGGTCATGCCCAGAAACTTTCTCAGCCAAGACTGTCCAA
AACTTGGCAACTGAATGCCGCAGCCGGATGAGCCCATGTACAGTTCACAA
CAGATCAACATCCCTCCTGAACTACCCGACATCCTCAAACAGTTCACCAA
GGCCGCCATCAGGACACAACCCAAGGACGTGCTCCAGTGGTCCGCTGCGT
ACTTCCGAGCACTTTCCAAAGGAGAGACCCTTCCTGTGAAGGAAAGACTA
GAGATGCCCACAGCCACACAGAAAACAGACACTGGGCTCACGCCTGGACT
ACTGAAGGTCTTACACAAGCAGCTGAGCCCCCAGGGTACCGTGCAGCTGT
CTGTCCTGGAGCAGAAGTGGAAGGAGGTGTGTCTGCCCCAGGAACAGATG
GATGAGATCATGAAAGTGGGAACCTTCTCCGACAATATCGAGTGGATCAA
GTTCTTCGCTCTGGCGTGTTCTTCTCTTGCAGGGAATATCACACAAGCCA
TGAAGATTGTGTGCGAGATCCTGACCTCTGACCCTGAGGGCGGGGCGGCG
AAGATCGACTTCAACACATTCAAGGAGCTGTACACGTACCTCGCACAGAT
CGACGGAGAGATCGGACAGGTTCACATCGACGGCGTCTTGTCGTATCTCC
AGTACGACGTTGACAAACAAGAAGGAATGGTCATGCCCAGAAACTTTCTC
AGCCAAGACTGTCCAAAACTTGGCAACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000007 | genome | Sc0000007:4360152..4364331 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96866_cuf23 |
| Biotype | protein_coding |
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