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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96859_cuf0 >transcript:BL96859_cuf0-protein ID=transcript:BL96859_cuf0-protein|Name=transcript:BL96859_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=473bp
DFQATNVLSGAWVPSPSDLHQWLMVDLQKTYFVTATITQGRDSHQWDVWV
TSYSITYGVQSGDEITYSDENGQAVTFPGNTDDNTPVRNELSSYSGSITA
RYVRFHPLTSEGYSTMRAGVVVHSALQPVGRWPLNEQDGAKDVTGNGNEG
IASGTQVAEGPAGPGSQAFLFAGSPDSYIRILNNDGGLDVRYSYTILAHI
YPNGASGPLFEYKRDVGGRGVYLWQWDYGIDTAARLRNGTYQIPPASSPS
DIATDRWHYVGGSYDFRTGEQAVWVDNVKAGSMNYLVAVELATQYAVRVG
YMNTHSQEDNYKGRISCLQLFDVPLNEHQIATVREACQDNVIHQWLEQDP
SWVVDSAGTPWVAYGVTHDAAKVLDGNTGTHWNPQGVDQNNGEDWYIVLD
FTEPQVLTGIAVNNYGDTGHDVAAFTLQKSQVGSPYDWEDVKSVDTVQLR
TDQRQEFGGFQGTARYWRFVITH Run BLAST on NCBI mRNA from alignment at Sc0000007:3810033..3813061+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96859_cuf0 ID=transcript:BL96859_cuf0|Name=transcript:BL96859_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3029bp|location=Sequence derived from alignment at Sc0000007:3810033..3813061+ (Branchiostoma lanceolatum)
TGGATTTCCAGGCGACTAATGTGCTGTCTGGAGCTTGGGTTCCTAGTCCA
TCTGACCTCCATCAATGGCTTATGGTGGACCTTCAGAAAACCTACTTTGT
AACAGCAACAATCACTCAGGGAAGGGATTCACATCAATGGGACGTTTGGG
TAACATCATACAGCATCACGTATGGAGTGCAGAGTGGGGACGAGATCACC
TACAGCGATGAGAACGGACAGGCGGTAGTAAGTATCATTACCATTATGAT
ATTATCATTATGATATTGTTACCACCGTGAAAATGGAGGTATATATAGGT
TTGGGTTTGTATGTTTGTATGTATGTATGTATGTCTGTATGTATGTATTT
CAGCAGCAACAACTCAAGAATCTCTGAATGAATTGTGATGATATTTGGTA
TGTGTGTAGATGTTGTGAACCTGAAGGTCAATGTTGATTTTGGGTCAAGG
GGCACACCGCATCTTACCGATCACATATACTGCGAATCTACACACCTGTG
GTAAGTTTGGTAAATCCCACATTTTGTGCAGTGTGATGACTAATGACCAA
TCACCGATCTTCCTCCAGACCTTTCCAGGGAACACTGACGATAACACCCC
TGTGAGAAATGAGTTGTCGTCCTACAGTGGTTCTATCACCGCCCGTTACG
TCAGGTTCCATCCACTGACATCGGAGGGGTATAGCACCATGCGGGCTGGA
GTTGTTGTCCGTGAGTAGTCTTTGAGTTCTCTTATAAGCAACAACGTTAA
ACAAAACATACTCTGAATTCGTATGTAGTTAGTTCTAACTCTGACATTTT
TTTCTAGACCGTATGCAAACATAGATCATGTTATGAATGTAAGTAATCAA
TACATTTTGATGATGAATTTATTTGGATGCTTCTATTCAATTGACAGTCA
AGATCCATGGTTTCCAAAATGTATTTTAGTAAATCTACTGATAAAACATT
CATTGATTCATAACTATGCAGAAAAAAGGCCTAAGGACATTTGTCACTTG
ACAACTAAAAATTGCTCTTAAATCTTGAATTCTTCTATTTTCACTTGCAA
CTGAACAGATTCAGCGCTGCAGCCTGTGGGCCGATGGCCTCTGAACGAAC
AAGATGGCGCGAAAGACGTAACCGGAAACGGAAATGAGGGCATAGCTTCG
GGAACCCAGGTAGCTGAAGGTCCAGCAGGTCCAGGATCTCAAGCTTTCCT
GTTCGCCGGTTCTCCAGACTCGTACATCCGCATTCTTAACAACGACGGCG
GTTTGGACGTCCGTTATTCCTACACCATATTGGCCCACATCTACCCTAAT
GGAGCGTCGGGACCTCTCTTCGAGTATAAGCGCGACGTGGGCGGCAGGGG
AGTGTATCTATGGCAATGGGACTATGGCATTGACACGGCGTAAGTCTATA
TGACCCTATATGCGGATACCAATAAATTTTTTGTTTTTTTATTTCTATTA
TAACAAAAATGCTGTTGTTTTTCACCAGAAATCACTGTAATATCTGTCTG
CTTTGCATACGGTATTTTGGCTCTGAATGAGCAGGCAGTATCATGGCCTT
TGCTCTCACGTGACAATGACGTCAGTATTGTCCGCCATGTTGGATTGTTA
AAGCATGACGTGATTTCAAATCTCTATTATGCATTGAATGAGCTACAATG
TGCAAACCTTGTCGAGAAACACCGAATTCTCGACGTGTACTGAGTGATAG
GGGCCCTAATGATTTCTTTCGACATTTCAGAGCACGTCTTAGGAATGGAA
CGTACCAAATACCCCCGGCTTCTTCACCCTCAGACATTGCCACGGACCGC
TGGCATTATGTCGGTGGGAGTTACGACTTTCGCACGGGGGAGCAGGCAGT
TTGGGTCGACAACGTCAAAGCCGGGAGCATGAACTATCTCGTGGCTGTTG
AGCTAGCGACCCAGTACGCCGTAAGAGTAGGGTACATGAATACGCACAGT
CAAGAGGATAACTACAAAGGACGAATATCCTGCCTGCAACTCTTTGACGT
CCCCTTAAATGAACACCAGATCGCTACTGTGAGAGAAGCATGTCAAGGTA
GGTTGTGTTTTTTCTTCGATACAAAAAAGTATTTGCTACATGCCTCGCGA
ATTTGTGTGCCTCTTTGCTGTGATGATATATGTTTTCGCTTTGTTGTAGA
CACGAAAATGAAGCGAAAAACAAAGCTAAACAGAATAAAACAAAACAGCT
CAGCGGTTTGTAACCGGGGCATGGATGTTTTCATCCTGTTCCAACCACTT
AACCTTTTTGATCGATGTTTCTACTTTACGAATTGCGAATGGGAAAAGGA
ACGTTCAACCGGTTATGACGTGGAAAATATCTAAATGTAGTGCCTTAGCT
GACCCTCAGTCCGAATCACCCTACAAATTTACCTGTATCGTACCTGGTGT
CTAAGATATAACGTGCTATGGCAGCATGTCTTTGTCAAAATATGGTGTGG
AAATGCATACCATTTTCAATTAGTTCATGTCACGTGTGGAATACAGTACG
CGACATTCGACCTACCACACTTTAGTGTACCTCGGCACAAGTGACTACTT
TCTGTGTATACATACGTCGACTACCTTGTTTTGGCAGAGCTGGCTTAACA
ATTCTGCGTCCTCTGCTTTATCCAGATAACGTCATACATCAGTGGCTGGA
ACAGGATCCGTCATGGGTTGTTGACTCCGCCGGCACACCGTGGGTTGCGT
ACGGAGTGACACATGACGCTGCGAAAGTCTTGGATGGGAACACTGGAACC
CACTGGAACCCTCAAGGTGTCGATCAGAACAACGGTGAAGACTGGTACAT
CGTACTGGACTTCACAGAGCCCCAAGTTCTGACCGGCATCGCAGTCAACA
ACTACGGAGACACCGGCCATGACGTTGCAGCGTTCACGTTGCAAAAGTCG
CAGGTTGGGAGTCCGTACGACTGGGAGGATGTCAAGTCTGTCGATACCGT
GCAGCTAAGGACGGACCAGCGCCAGGAGTTCGGCGGGTTCCAGGGAACAG
CGCGGTATTGGAGGTTCGTGATCACACAT Coding sequence (CDS) from alignment at Sc0000007:3810033..3813061+ >transcript:BL96859_cuf0 ID=transcript:BL96859_cuf0|Name=transcript:BL96859_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=7095bp|location=Sequence derived from alignment at Sc0000007:3810033..3813061+ (Branchiostoma lanceolatum)
GATTTCCAGGCGACTAATGTGCTGTCTGGAGCTTGGGTTCCTAGTCCATC
TGACCTCCATCAATGGCTTATGGTGGACCTTCAGAAAACCTACTTTGTAA
CAGCAACAATCACTCAGGGAAGGGATTCACATCAATGGGACGTTTGGGTA
ACATCATACAGCATCACGTATGGAGTGCAGAGTGGGGACGAGATCACCTA
CAGCGATGAGAACGGACAGGCGGTAACCTTTCCAGGGAACACTGACGATA
ACACCCCTGTGAGAAATGAGTTGTCGTCCTACAGTGGTTCTATCACCGCC
CGTTACGTCAGGTTCCATCCACTGACATCGGAGGGGTATAGCACCATGCG
GGCTGGAGTTGTTGTCCATTCAGCGCTGCAGCCTGTGGGCCGATGGCCTC
TGAACGAACAAGATGGCGCGAAAGACGTAACCGGAAACGGAAATGAGGGC
ATAGCTTCGGGAACCCAGGTAGCTGAAGGTCCAGCAGGTCCAGGATCTCA
AGCTTTCCTGTTCGCCGGTTCTCCAGACTCGTACATCCGCATTCTTAACA
ACGACGGCGGTTTGGACGTCCGTTATTCCTACACCATATTGGCCCACATC
TACCCTAATGGAGCGTCGGGACCTCTCTTCGAGTATAAGCGCGACGTGGG
CGGCAGGGGAGTGTATCTATGGCAATGGGACTATGGCATTGACACGGCAG
CACGTCTTAGGAATGGAACGTACCAAATACCCCCGGCTTCTTCACCCTCA
GACATTGCCACGGACCGCTGGCATTATGTCGGTGGGAGTTACGACTTTCG
CACGGGGGAGCAGGCAGTTTGGGTCGACAACGTCAAAGCCGGGAGCATGA
ACTATCTCGTGGCTGTTGAGCTAGCGACCCAGTACGCCGTAAGAGTAGGG
TACATGAATACGCACAGTCAAGAGGATAACTACAAAGGACGAATATCCTG
CCTGCAACTCTTTGACGTCCCCTTAAATGAACACCAGATCGCTACTGTGA
GAGAAGCATGTCAAGATAACGTCATACATCAGTGGCTGGAACAGGATCCG
TCATGGGTTGTTGACTCCGCCGGCACACCGTGGGTTGCGTACGGAGTGAC
ACATGACGCTGCGAAAGTCTTGGATGGGAACACTGGAACCCACTGGAACC
CTCAAGGTGTCGATCAGAACAACGGTGAAGACTGGTACATCGTACTGGAC
TTCACAGAGCCCCAAGTTCTGACCGGCATCGCAGTCAACAACTACGGAGA
CACCGGCCATGACGTTGCAGCGTTCACGTTGCAAAAGTCGCAGGTTGGGA
GTCCGTACGACTGGGAGGATGTCAAGTCTGTCGATACCGTGCAGCTAAGG
ACGGACCAGCGCCAGGAGTTCGGCGGGTTCCAGGGAACAGCGCGGTATTG
GAGGTTCGTGATCACACATGATTTCCAGGCGACTAATGTGCTGTCTGGAG
CTTGGGTTCCTAGTCCATCTGACCTCCATCAATGGCTTATGGTGGACCTT
CAGAAAACCTACTTTGTAACAGCAACAATCACTCAGGGAAGGGATTCACA
TCAATGGGACGTTTGGGTAACATCATACAGCATCACGTATGGAGTGCAGA
GTGGGGACGAGATCACCTACAGCGATGAGAACGGACAGGCGGTAACCTTT
CCAGGGAACACTGACGATAACACCCCTGTGAGAAATGAGTTGTCGTCCTA
CAGTGGTTCTATCACCGCCCGTTACGTCAGGTTCCATCCACTGACATCGG
AGGGGTATAGCACCATGCGGGCTGGAGTTGTTGTCCATTCAGCGCTGCAG
CCTGTGGGCCGATGGCCTCTGAACGAACAAGATGGCGCGAAAGACGTAAC
CGGAAACGGAAATGAGGGCATAGCTTCGGGAACCCAGGTAGCTGAAGGTC
CAGCAGGTCCAGGATCTCAAGCTTTCCTGTTCGCCGGTTCTCCAGACTCG
TACATCCGCATTCTTAACAACGACGGCGGTTTGGACGTCCGTTATTCCTA
CACCATATTGGCCCACATCTACCCTAATGGAGCGTCGGGACCTCTCTTCG
AGTATAAGCGCGACGTGGGCGGCAGGGGAGTGTATCTATGGCAATGGGAC
TATGGCATTGACACGGCAGCACGTCTTAGGAATGGAACGTACCAAATACC
CCCGGCTTCTTCACCCTCAGACATTGCCACGGACCGCTGGCATTATGTCG
GTGGGAGTTACGACTTTCGCACGGGGGAGCAGGCAGTTTGGGTCGACAAC
GTCAAAGCCGGGAGCATGAACTATCTCGTGGCTGTTGAGCTAGCGACCCA
GTACGCCGTAAGAGTAGGGTACATGAATACGCACAGTCAAGAGGATAACT
ACAAAGGACGAATATCCTGCCTGCAACTCTTTGACGTCCCCTTAAATGAA
CACCAGATCGCTACTGTGAGAGAAGCATGTCAAGATAACGTCATACATCA
GTGGCTGGAACAGGATCCGTCATGGGTTGTTGACTCCGCCGGCACACCGT
GGGTTGCGTACGGAGTGACACATGACGCTGCGAAAGTCTTGGATGGGAAC
ACTGGAACCCACTGGAACCCTCAAGGTGTCGATCAGAACAACGGTGAAGA
CTGGTACATCGTACTGGACTTCACAGAGCCCCAAGTTCTGACCGGCATCG
CAGTCAACAACTACGGAGACACCGGCCATGACGTTGCAGCGTTCACGTTG
CAAAAGTCGCAGGTTGGGAGTCCGTACGACTGGGAGGATGTCAAGTCTGT
CGATACCGTGCAGCTAAGGACGGACCAGCGCCAGGAGTTCGGCGGGTTCC
AGGGAACAGCGCGGTATTGGAGGTTCGTGATCACACATGATTTCCAGGCG
ACTAATGTGCTGTCTGGAGCTTGGGTTCCTAGTCCATCTGACCTCCATCA
ATGGCTTATGGTGGACCTTCAGAAAACCTACTTTGTAACAGCAACAATCA
CTCAGGGAAGGGATTCACATCAATGGGACGTTTGGGTAACATCATACAGC
ATCACGTATGGAGTGCAGAGTGGGGACGAGATCACCTACAGCGATGAGAA
CGGACAGGCGGTAACCTTTCCAGGGAACACTGACGATAACACCCCTGTGA
GAAATGAGTTGTCGTCCTACAGTGGTTCTATCACCGCCCGTTACGTCAGG
TTCCATCCACTGACATCGGAGGGGTATAGCACCATGCGGGCTGGAGTTGT
TGTCCATTCAGCGCTGCAGCCTGTGGGCCGATGGCCTCTGAACGAACAAG
ATGGCGCGAAAGACGTAACCGGAAACGGAAATGAGGGCATAGCTTCGGGA
ACCCAGGTAGCTGAAGGTCCAGCAGGTCCAGGATCTCAAGCTTTCCTGTT
CGCCGGTTCTCCAGACTCGTACATCCGCATTCTTAACAACGACGGCGGTT
TGGACGTCCGTTATTCCTACACCATATTGGCCCACATCTACCCTAATGGA
GCGTCGGGACCTCTCTTCGAGTATAAGCGCGACGTGGGCGGCAGGGGAGT
GTATCTATGGCAATGGGACTATGGCATTGACACGGCAGCACGTCTTAGGA
ATGGAACGTACCAAATACCCCCGGCTTCTTCACCCTCAGACATTGCCACG
GACCGCTGGCATTATGTCGGTGGGAGTTACGACTTTCGCACGGGGGAGCA
GGCAGTTTGGGTCGACAACGTCAAAGCCGGGAGCATGAACTATCTCGTGG
CTGTTGAGCTAGCGACCCAGTACGCCGTAAGAGTAGGGTACATGAATACG
CACAGTCAAGAGGATAACTACAAAGGACGAATATCCTGCCTGCAACTCTT
TGACGTCCCCTTAAATGAACACCAGATCGCTACTGTGAGAGAAGCATGTC
AAGATAACGTCATACATCAGTGGCTGGAACAGGATCCGTCATGGGTTGTT
GACTCCGCCGGCACACCGTGGGTTGCGTACGGAGTGACACATGACGCTGC
GAAAGTCTTGGATGGGAACACTGGAACCCACTGGAACCCTCAAGGTGTCG
ATCAGAACAACGGTGAAGACTGGTACATCGTACTGGACTTCACAGAGCCC
CAAGTTCTGACCGGCATCGCAGTCAACAACTACGGAGACACCGGCCATGA
CGTTGCAGCGTTCACGTTGCAAAAGTCGCAGGTTGGGAGTCCGTACGACT
GGGAGGATGTCAAGTCTGTCGATACCGTGCAGCTAAGGACGGACCAGCGC
CAGGAGTTCGGCGGGTTCCAGGGAACAGCGCGGTATTGGAGGTTCGTGAT
CACACATGATTTCCAGGCGACTAATGTGCTGTCTGGAGCTTGGGTTCCTA
GTCCATCTGACCTCCATCAATGGCTTATGGTGGACCTTCAGAAAACCTAC
TTTGTAACAGCAACAATCACTCAGGGAAGGGATTCACATCAATGGGACGT
TTGGGTAACATCATACAGCATCACGTATGGAGTGCAGAGTGGGGACGAGA
TCACCTACAGCGATGAGAACGGACAGGCGGTAACCTTTCCAGGGAACACT
GACGATAACACCCCTGTGAGAAATGAGTTGTCGTCCTACAGTGGTTCTAT
CACCGCCCGTTACGTCAGGTTCCATCCACTGACATCGGAGGGGTATAGCA
CCATGCGGGCTGGAGTTGTTGTCCATTCAGCGCTGCAGCCTGTGGGCCGA
TGGCCTCTGAACGAACAAGATGGCGCGAAAGACGTAACCGGAAACGGAAA
TGAGGGCATAGCTTCGGGAACCCAGGTAGCTGAAGGTCCAGCAGGTCCAG
GATCTCAAGCTTTCCTGTTCGCCGGTTCTCCAGACTCGTACATCCGCATT
CTTAACAACGACGGCGGTTTGGACGTCCGTTATTCCTACACCATATTGGC
CCACATCTACCCTAATGGAGCGTCGGGACCTCTCTTCGAGTATAAGCGCG
ACGTGGGCGGCAGGGGAGTGTATCTATGGCAATGGGACTATGGCATTGAC
ACGGCAGCACGTCTTAGGAATGGAACGTACCAAATACCCCCGGCTTCTTC
ACCCTCAGACATTGCCACGGACCGCTGGCATTATGTCGGTGGGAGTTACG
ACTTTCGCACGGGGGAGCAGGCAGTTTGGGTCGACAACGTCAAAGCCGGG
AGCATGAACTATCTCGTGGCTGTTGAGCTAGCGACCCAGTACGCCGTAAG
AGTAGGGTACATGAATACGCACAGTCAAGAGGATAACTACAAAGGACGAA
TATCCTGCCTGCAACTCTTTGACGTCCCCTTAAATGAACACCAGATCGCT
ACTGTGAGAGAAGCATGTCAAGATAACGTCATACATCAGTGGCTGGAACA
GGATCCGTCATGGGTTGTTGACTCCGCCGGCACACCGTGGGTTGCGTACG
GAGTGACACATGACGCTGCGAAAGTCTTGGATGGGAACACTGGAACCCAC
TGGAACCCTCAAGGTGTCGATCAGAACAACGGTGAAGACTGGTACATCGT
ACTGGACTTCACAGAGCCCCAAGTTCTGACCGGCATCGCAGTCAACAACT
ACGGAGACACCGGCCATGACGTTGCAGCGTTCACGTTGCAAAAGTCGCAG
GTTGGGAGTCCGTACGACTGGGAGGATGTCAAGTCTGTCGATACCGTGCA
GCTAAGGACGGACCAGCGCCAGGAGTTCGGCGGGTTCCAGGGAACAGCGC
GGTATTGGAGGTTCGTGATCACACATGATTTCCAGGCGACTAATGTGCTG
TCTGGAGCTTGGGTTCCTAGTCCATCTGACCTCCATCAATGGCTTATGGT
GGACCTTCAGAAAACCTACTTTGTAACAGCAACAATCACTCAGGGAAGGG
ATTCACATCAATGGGACGTTTGGGTAACATCATACAGCATCACGTATGGA
GTGCAGAGTGGGGACGAGATCACCTACAGCGATGAGAACGGACAGGCGGT
AACCTTTCCAGGGAACACTGACGATAACACCCCTGTGAGAAATGAGTTGT
CGTCCTACAGTGGTTCTATCACCGCCCGTTACGTCAGGTTCCATCCACTG
ACATCGGAGGGGTATAGCACCATGCGGGCTGGAGTTGTTGTCCATTCAGC
GCTGCAGCCTGTGGGCCGATGGCCTCTGAACGAACAAGATGGCGCGAAAG
ACGTAACCGGAAACGGAAATGAGGGCATAGCTTCGGGAACCCAGGTAGCT
GAAGGTCCAGCAGGTCCAGGATCTCAAGCTTTCCTGTTCGCCGGTTCTCC
AGACTCGTACATCCGCATTCTTAACAACGACGGCGGTTTGGACGTCCGTT
ATTCCTACACCATATTGGCCCACATCTACCCTAATGGAGCGTCGGGACCT
CTCTTCGAGTATAAGCGCGACGTGGGCGGCAGGGGAGTGTATCTATGGCA
ATGGGACTATGGCATTGACACGGCAGCACGTCTTAGGAATGGAACGTACC
AAATACCCCCGGCTTCTTCACCCTCAGACATTGCCACGGACCGCTGGCAT
TATGTCGGTGGGAGTTACGACTTTCGCACGGGGGAGCAGGCAGTTTGGGT
CGACAACGTCAAAGCCGGGAGCATGAACTATCTCGTGGCTGTTGAGCTAG
CGACCCAGTACGCCGTAAGAGTAGGGTACATGAATACGCACAGTCAAGAG
GATAACTACAAAGGACGAATATCCTGCCTGCAACTCTTTGACGTCCCCTT
AAATGAACACCAGATCGCTACTGTGAGAGAAGCATGTCAAGATAACGTCA
TACATCAGTGGCTGGAACAGGATCCGTCATGGGTTGTTGACTCCGCCGGC
ACACCGTGGGTTGCGTACGGAGTGACACATGACGCTGCGAAAGTCTTGGA
TGGGAACACTGGAACCCACTGGAACCCTCAAGGTGTCGATCAGAACAACG
GTGAAGACTGGTACATCGTACTGGACTTCACAGAGCCCCAAGTTCTGACC
GGCATCGCAGTCAACAACTACGGAGACACCGGCCATGACGTTGCAGCGTT
CACGTTGCAAAAGTCGCAGGTTGGGAGTCCGTACGACTGGGAGGATGTCA
AGTCTGTCGATACCGTGCAGCTAAGGACGGACCAGCGCCAGGAGTTCGGC
GGGTTCCAGGGAACAGCGCGGTATTGGAGGTTCGTGATCACACAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000007 | genome | Sc0000007:3810033..3813061 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96859_cuf0 |
| Biotype | protein_coding |
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