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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96852_cuf5 >transcript:BL96852_cuf5-protein ID=transcript:BL96852_cuf5-protein|Name=transcript:BL96852_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=197bp
ACVAGCQGLQLLNGTAFPTYNYTDCECLQSGTWALQGRCSTPCPQWKFIL
FMASSFCLAFFSGMQISPSYQVSIRCVKVEEKSFALGIRHLLQRLLANIP
APVYFGAVIDAACTMWQRSCGSLKACWVYDRRQFAYGYFGLMCGLSGGMI
IFVVATWAVLRHQWKKTKKAKLRAANGVPESMTLMMTTTACNKMADA Run BLAST on NCBI mRNA from alignment at Sc0000007:5590898..5596759+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96852_cuf5 ID=transcript:BL96852_cuf5|Name=transcript:BL96852_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=5862bp|location=Sequence derived from alignment at Sc0000007:5590898..5596759+ (Branchiostoma lanceolatum)
CCGCATGCGTCGCAGGGTGTCAGGGTCTCCAACTACTAAATGGAACAGCT
TTTCCGGTATACTATATACTACCTCCCTGAATGAATGAGGCTTACCTCCA
TTGGATGTATTGTTTTCAGTGCGTCTGTGTGTTTGCGTGCCTTTGTTTCA
ACATACATTAATCAGTATAACTAGATATACTATTGATGGACTGTGATAAT
ATTTTGTGCGTGGGCAAAGTTTGGGGAAGGTTTTAGTCAACGTCGACTTT
GAACCTCCTAGTGGTCTTTATGGGCAATGCTGCAAAACTTGGTTTTGCAT
CAAATGTTGTGGACATGCTGTGGTCTTGATTGTTTGGTGACAGATAAGTC
AGGAAGAAGTGGTGCAGATTTGAGCTGAGGTTATATCTATCATGATATGA
CTGTGGCCTATGCCCAAGAATGTCAGTAAGATGATTGTTTCAACTGGGTC
AAAAGTAAATAATCTAAAGGCACCAGCTATAGGCCATAATTGCCAAGAGG
CCCTTATACAGAGGTGACCACAAGTACAGGATTGACTGTTACAACCTTCC
ATTTTCAGACGTATAACTACACTGACTGCGAATGTCTGCAGTCTGGAACG
TGGGCGCTGCAGGGACGCTGCAGCACACCATGTCCACAATGGAAGTTCAT
CCTCTTCATGGCCTCATCCTTCTGCCTGGCATTCTTTTCCGGCATGCAGA
TATCTCCCTCCTATCAGGTCTCCATCAGGTGAGCATCAGGAAATAAGTCA
CAAGAATTCATCTGTCAATATCAATCATGAGACCTCATACTATTTCCGGT
ATCAATCTCGGACGCCATTTTGAATCTGCTCACGCGAGAGCACAGTGTGA
CGAGACCTCGCGAGAAGTAGCGTCAAAACGAGGCTAGAGATGAANAGGCT
AGGGATGAATATCATTTTTGCCCCTATAACCTTTGGTGTGTGATCAGCTT
AAATATTTACAAGTCTTATGATACAGCACAGTCGTTGTTTTTTTAAACCA
TATGCATCTTTCTAGTTTTGTTATTTCTCACACAATTGACGTTGATCTTT
GTACATTTCAGGTGTGTCAAAGTGGAAGAGAAATCCTTCGCACTCGGCAT
CAGGCACTTACTTCAGAGGCTGCTCGGTAAGTTAGTAGCATCACGTATCT
TGTCGGCTTGAAGTAATTCAATGTCCAGTTTATAAAAAGCCTTTCTATAT
CATGTTCGGTTCGGGCAATCATGATGATAATGCATATCGTAAAAATCTAC
GGAACTACCGGTGAAAAACTATCATTGTTTTCAAAGTACTCATTTTCAAT
TTTCCACACAGCTAACATCCCTGCTCCGGTGTATTTCGGTGCCGTCATCG
ACGCAGCCTGCACCATGTGGCAAAGGTCATGTGGAAGTCTCAAGGCATGC
TGGGTCTACGACAGAAGGCAATTTGCATACGGCTATTTCGGTCTCATGTG
TGGACTGTCGGGAGGGATGATTATTTTTGTTGTAGCGACATGGGCGGTTC
TTAGGCATCAGTGGAAGAAAACTAAGAAAGCTAAATTACGGGCAGCCAAT
GGCGTCCCCGAATCTATGACACTGATGATGACGACAACAGCCTGTAACAA
GATGGCCGACGCATGACGTCACAACCAACATGGCGTAATACAGTACAGAT
TAGTAATGCAGGATAGGTTTTGATTTGCTTGTGCCTTTCACGTTGAAAAC
GTTAGTTTCAGAATCTAATCGGCTAGATTTACCTCCTAACTAGCAAAAAA
ATTTAGGCAGTAGGTATTTCCTCCAACACTAACGGCAGGACGTTGGTACT
TGGTTGAAACAAATGTCTGCTTAAGCTTCGGGTTTGTCTGTGGTAGTTCA
ACGTCCAATTGTATCAAACAAATAATTTCAATTATCTGAGGTTCAACCAT
CCAGCATGTCTATCATAGTGACTGCTTACGTCATTGTCAACTGACTGCAA
AGTCACGTGACTAAAGCGTAAGCAGTCAACTGGCAACAATACTGCTGCCG
TGTGATTAACAATTTATCTTATTCTTATTCAAACATGTATACATTCTGCA
ATTTTTTGTACAATTAATACACATGGCCTTTCCAAATGAAAGGTAAATAT
AAAACGAATGCAGTACATATTACTTTATATAACACAATTATGAATACCTA
GCGCCTATGAAATGTTTAACATTACTATAAGATACACGTTGTTAAACCGA
ATTTATCAAACTACGCAATTTGCGCACAAACTTGTTAGCATTGCATATGA
TATGGCAATATATTGGTTTTCATTGGACAGTATGCTTATCATCTTCGCCG
AGTACTATAGTACTCAGAGAAGATTATGTTTTCGGTTGAGCCAGCTGTTT
GGTGGGTCTGTATGTATGTCAAGAGCATGACTCAAGGAACCTTCGATGAA
TCTTTATGATTTTTGGTAGGAGTGAGGTGGTTGTACAAAGAAAGGTCAAG
TTCGAAAATGGTTCACCTAGCGTTTTTCAACAGTACTACAGCAGACTTTT
AATTTTTGTGTGTTTGTATGTAGGCAAAAAAAGTGGCGGAAACGTTGATC
GATCTTCATGATTTTTTGTAGGTGTGTAGATGTTGTGAAAACGGAGGTCA
AGTTCAAAAATGATTCTCCTGGCATTTTCCATCGGTCCTGCAGCGGGCTT
TGTGTGGATGTGTATTTGTATGTGGACAACATACCTCGAGAAGCTGTAGA
TGCTTCTGTATGATATTTACTGAATTACTTGAGAAGGGGTCAACAGATCG
TCGTGAAGTTTTGTATGTAGAGAGCTCAGATGGCGCTTTACACAATCAAT
AACTAATCATGCAAATCAGGAGCTCATCTGCATAATTAGTAAGGATAGTT
AGTAAATCCACTATTCCATGATGGGGCATGTGACAGTGTTCCCGAAACAG
GTCAACAGAGGGCCTTGCCTAAAAGTATAAATAAACAGATGGGGCAAATA
AATAAACAGATGGGGCACATGAATAAACAGATGGGGCAGTCTCAGTATAC
TCCAAGCAGATGTGTGGGTTCGGTTGGTTTTTAACGTGTTCAGTTTAGGC
ATTTTTGTCCAACACACGGTTGGAGACATAACGGAAAGATAGAAAGCCGG
ACAAAAACACCTAAAAACATGTGAATAACCAGCCGGACCTACTCCTCTGC
TCAGAGAGTACACTGCACCAAAACTGCACCACTGCTAGGTATGGAAAAGT
CACATGTACTATGTCTTTCAAAATGTGGATGATATGGAATAAAGATTTAT
TCTATTCATATATATTGACTGCACCATTTCATCATCACTTTCAATATTTT
GTCATGACCAGTTTTAACATATATCAGCACACTAGACATTTATACTAGTC
CTGTACCACCAAATAATTTTAACTCTATCTAGATTGGACTCATCCCCCCC
TCCCCATCTATCATAACTTCAAAACGGTATGGTGTATGATCAAATTTGCA
GGGGGTGATAAGCATGTAAATATTAATCACTCTCCATAATAAGCCTTGAT
TATTTGGCGAAGATAATGTGTTCGTGGAACTCTAGTTACGTATGCCATTT
GTATTGGTTTATGGTATGGTACAATATAAGCCTGTTGTTAAATTCTAGAT
AACATATTTTGAACGTAGTAAAAGTTATCTGTATTCAAAGCTATCGTCAT
TATGTGTTTATTTTTACGCGATATGTGTTTAGAATAAAAATAAAAAATCA
ACTAAATCATGAAATGTGAGACAAAGTTTACAATACTTTCCTGCGGAAGA
AGCCAGATAATTCAAAACATTTATCTTTTTTATTTATTTATTCAAATTTA
CCCTATTTTTGGAGGGATTGCCATAACAGGTGACTATCACCTTTTCAAGA
TGTCAACCCAGACCAGACTGTAAGGTTTGGACCATCGCACTCCGGGGCAC
GGAAAGGTAGGGTGTGATTCTCCCCAATCACGGGACCTCCATTTAACGTC
CTATCCCAGGGACGTCCCTATCCGAAGCTAGGTACTCATTTACACATGAG
TGAAGTGAGGACATTTGTGTTAAGTGCCTTTCCCAAGGGCATTTGTTCGT
CCCTCCCCAACCGACCTGTGATTGTCATGGTGGCGAACTCTGTTTGCCCA
GCAAACATGCAACCGCTTACTCCCGAAGCAGACGTTGTAGGGGAGGGACC
TNTCACACTCCGGGGCACGGAAATGTAGGGTGTGGCTCTCCCCAATCACG
GGACCTCCATTTAACGTCCTATCCCAGGGACGTCCCTATCCGAAGCTAGG
TACTCATTTACACATGAGTGAAGTGAGGACATTTGTGTTAAGTGCCTTTC
CCAAGGGCATTTGTTCGTCCCTCCCCAACCGACCCGTGATTGTCATGGTG
GCGAACTCTATTTGCCCAGCAAACATGCAACCGCTTACTCCCGAAGCAGA
CGTTGTAGGGGAGGGACCTCTAAATGGACTTTCCTATGCCACACATGGAT
AAGCCATCAAAAACAATCACTTAAAAACACATGTATCTACATTTCAAACC
TCAAATCTTTACCACCCCTGCAAAGCTGGATTTGTCAGGTTGCTTTAGGT
GAAAAAAGCAGGAGTTCAACTCCAGCATTCTAACGAGCTAAAGACAGAAG
TTTCAGCTAGATGAGACCAGGATTTCACCCCCCATCCTAATATATCAGTC
CAACCATAAGAGAAGGGTTCAGAGGTCAATCCGAGCTNGTTCAGAGGTCA
ATCCAAGCTCAAAACATGACAAAAATCACCTATTTTGGCCAGACTTTTAA
AATTCACATTCTTCTGTCCTCCCTAAAAGTGGACAATTCTGACCAACATT
TGACCAGGAAAAATTTGTTTTTAGCAAAATACTAAAGGGTATGCAGCGTG
CACTCTACTGCGCAACTCTATTAGCTGGTCCCTCCCCTGTAGGGTAAAAT
TGTGACCACGGGACATATGAGAAGAAGATCACAATTTCCCCCAGCAACCT
CAACTTGGATAGTTACAATCGCCGTTGAAGAAGGAGGTTTTAGAATTATA
TCACACAAGAAGTTTCTTTTTCTTTCGACAAGTCGTGTAAATACAAGAAG
AGAAGCAACACTTCAAAACAAGCGCACAGAACAATTAGACCGGCCAAAGT
GGAGCTCGAACTATTTTTGTACCAGTACTTCAGCATGATCTAATCTTAAT
CAAAGACTTAACATCGCCCGTATGATGGTTTATTGTTTCAAACTCAAATT
TTTCATGTTACGGTTAAAAGTGAAAAGCACCAGATTCTCACAACGATATG
GTAATTTGCTTGTTTTATTCATATCTTCATTTAATATGATACATTCAAGA
GTATCATCATCTACATTTTTAAGTATGAAGTCAGTCGCAGTCATTGTTTC
ACAGTCCAAGGGTTAGACCAAGTTTACTAGGTGATAGAGCAATAACCAAA
TAAAGTAGGTCAAAAGACATGGAATGGCGTATTGTTTGAATATATATAAA
CAAGTGCAAAACTACAAAATACAAATAACTTTTACCACGTTTCGAATATA
TCCGAAAATATTGCATAGTCCTTTATCTAGAATTCAACAACAAGCTTATA
TTACATCATACTTGTACCATAAATGAATATAAAAGTTATACATAACAAGT
ACACTTTCCAATGAAAACCAATGTCTTGCCATATCATATGTACGCAGATT
GCAATAGTACTATAGTAATATAAAGATTTCACAGATATTCGTAATTGTGT
TGCATACAAACTTATGCACTGCTTTCATTTTTATATTTCATTTTTTGGGG
AGCTGTACTATATATGTCATTCGTATACATTGTACAACCTTTGGAGAAGT
ATGATAATTGTTTACAGATGCCTAAATATAAAAGGAAATAAACTATTTTA
CACACGGCAGCA Coding sequence (CDS) from alignment at Sc0000007:5590898..5596759+ >transcript:BL96852_cuf5 ID=transcript:BL96852_cuf5|Name=transcript:BL96852_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=2376bp|location=Sequence derived from alignment at Sc0000007:5590898..5596759+ (Branchiostoma lanceolatum)
GCATGCGTCGCAGGGTGTCAGGGTCTCCAACTACTAAATGGAACAGCTTT
TCCGACGTATAACTACACTGACTGCGAATGTCTGCAGTCTGGAACGTGGG
CGCTGCAGGGACGCTGCAGCACACCATGTCCACAATGGAAGTTCATCCTC
TTCATGGCCTCATCCTTCTGCCTGGCATTCTTTTCCGGCATGCAGATATC
TCCCTCCTATCAGGTCTCCATCAGGTGTGTCAAAGTGGAAGAGAAATCCT
TCGCACTCGGCATCAGGCACTTACTTCAGAGGCTGCTCGCTAACATCCCT
GCTCCGGTGTATTTCGGTGCCGTCATCGACGCAGCCTGCACCATGTGGCA
AAGGTCATGTGGAAGTCTCAAGGCATGCTGGGTCTACGACAGAAGGCAAT
TTGCATACGGCTATTTCGGTCTCATGTGTGGACTGTCGGGAGGGATGATT
ATTTTTGTTGTAGCGACATGGGCGGTTCTTAGGCATCAGTGGAAGAAAAC
TAAGAAAGCTAAATTACGGGCAGCCAATGGCGTCCCCGAATCTATGACAC
TGATGATGACGACAACAGCCTGTAACAAGATGGCCGACGCATGAGCATGC
GTCGCAGGGTGTCAGGGTCTCCAACTACTAAATGGAACAGCTTTTCCGAC
GTATAACTACACTGACTGCGAATGTCTGCAGTCTGGAACGTGGGCGCTGC
AGGGACGCTGCAGCACACCATGTCCACAATGGAAGTTCATCCTCTTCATG
GCCTCATCCTTCTGCCTGGCATTCTTTTCCGGCATGCAGATATCTCCCTC
CTATCAGGTCTCCATCAGGTGTGTCAAAGTGGAAGAGAAATCCTTCGCAC
TCGGCATCAGGCACTTACTTCAGAGGCTGCTCGCTAACATCCCTGCTCCG
GTGTATTTCGGTGCCGTCATCGACGCAGCCTGCACCATGTGGCAAAGGTC
ATGTGGAAGTCTCAAGGCATGCTGGGTCTACGACAGAAGGCAATTTGCAT
ACGGCTATTTCGGTCTCATGTGTGGACTGTCGGGAGGGATGATTATTTTT
GTTGTAGCGACATGGGCGGTTCTTAGGCATCAGTGGAAGAAAACTAAGAA
AGCTAAATTACGGGCAGCCAATGGCGTCCCCGAATCTATGACACTGATGA
TGACGACAACAGCCTGTAACAAGATGGCCGACGCATGAGCATGCGTCGCA
GGGTGTCAGGGTCTCCAACTACTAAATGGAACAGCTTTTCCGACGTATAA
CTACACTGACTGCGAATGTCTGCAGTCTGGAACGTGGGCGCTGCAGGGAC
GCTGCAGCACACCATGTCCACAATGGAAGTTCATCCTCTTCATGGCCTCA
TCCTTCTGCCTGGCATTCTTTTCCGGCATGCAGATATCTCCCTCCTATCA
GGTCTCCATCAGGTGTGTCAAAGTGGAAGAGAAATCCTTCGCACTCGGCA
TCAGGCACTTACTTCAGAGGCTGCTCGCTAACATCCCTGCTCCGGTGTAT
TTCGGTGCCGTCATCGACGCAGCCTGCACCATGTGGCAAAGGTCATGTGG
AAGTCTCAAGGCATGCTGGGTCTACGACAGAAGGCAATTTGCATACGGCT
ATTTCGGTCTCATGTGTGGACTGTCGGGAGGGATGATTATTTTTGTTGTA
GCGACATGGGCGGTTCTTAGGCATCAGTGGAAGAAAACTAAGAAAGCTAA
ATTACGGGCAGCCAATGGCGTCCCCGAATCTATGACACTGATGATGACGA
CAACAGCCTGTAACAAGATGGCCGACGCATGAGCATGCGTCGCAGGGTGT
CAGGGTCTCCAACTACTAAATGGAACAGCTTTTCCGACGTATAACTACAC
TGACTGCGAATGTCTGCAGTCTGGAACGTGGGCGCTGCAGGGACGCTGCA
GCACACCATGTCCACAATGGAAGTTCATCCTCTTCATGGCCTCATCCTTC
TGCCTGGCATTCTTTTCCGGCATGCAGATATCTCCCTCCTATCAGGTCTC
CATCAGGTGTGTCAAAGTGGAAGAGAAATCCTTCGCACTCGGCATCAGGC
ACTTACTTCAGAGGCTGCTCGCTAACATCCCTGCTCCGGTGTATTTCGGT
GCCGTCATCGACGCAGCCTGCACCATGTGGCAAAGGTCATGTGGAAGTCT
CAAGGCATGCTGGGTCTACGACAGAAGGCAATTTGCATACGGCTATTTCG
GTCTCATGTGTGGACTGTCGGGAGGGATGATTATTTTTGTTGTAGCGACA
TGGGCGGTTCTTAGGCATCAGTGGAAGAAAACTAAGAAAGCTAAATTACG
GGCAGCCAATGGCGTCCCCGAATCTATGACACTGATGATGACGACAACAG
CCTGTAACAAGATGGCCGACGCATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000007 | genome | Sc0000007:5590898..5596759 + |
Properties
| Property Name | Value |
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| Transcript id | BL96852_cuf5 |
| Biotype | protein_coding |
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