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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96842_cuf3 >transcript:BL96842_cuf3-protein ID=transcript:BL96842_cuf3-protein|Name=transcript:BL96842_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=139bp
QLRVVRKGDLAGLPLLKILYLFNNTLQTIEVGAFDDVPAIVDIEIGNNQI
SDLPPGVFRGCGQLQTVAADGNQLTKIRQGVFKDLPKLQEVRFTYTQIET
IEVGAFSNLSNSMYFSLQNNQIRVIRKGAFGAPAGAKQL Run BLAST on NCBI mRNA from alignment at Sc0000146:499778..505830- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96842_cuf3 ID=transcript:BL96842_cuf3|Name=transcript:BL96842_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=6053bp|location=Sequence derived from alignment at Sc0000146:499778..505830- (Branchiostoma lanceolatum)
CACAACTCCGTGTAGTTAGGAAAGGTGACCTGGCAGGACTCCCACTGCTG
AAAATCTTGTATCTCTTCAACAACACACTACAAACAATCGAGGTCGGCGC
CTTTGACGATGTCCCAGCAATTGTGGACATCGAGATCGGCAACAACCAGA
TATCCGACCTCCCTCCGGGTGTCTTCAGGGGCTGCGGTCAGCTACAGACT
GTGGCTGCAGATGGAAACCAGCTCACTAAAATACGGCAGGGAGTTTTCAA
CGACTTGACGAGCTTACAGGTGTGCCTTAACCTTTTACATGGTTGTTTGA
TGTACACAATAGGCATCATCGCTTAGATATCATATTGTAATGATAGTACA
TGTATAGTGAAATTTCTTTCTGCTCAAGGAAATGTATAATGATTGGAATC
ACGTCAACAGATGATGCAACACATTTATAGGGCCTGCCAAGCCCCTTTTC
ACTATAGCTAGAGGCTGCAACCGTGCTGCGACCGCCGAGCGACCAAGGAT
CTGACGGATAAAATGTTATGTCTTTACGTTTTGTGTGTTTTGTTTTACGT
ACTTTTACATTTTGCATCATATTCCAATTATGATATCAAGGGTAACACAA
ATCTAATTTTAGTCACAGCACGATCGCCGTCTAGTGGAAAGAGGGCCGTG
ATGTATCCCAGCTCACCATTTTTCTGTTCTGTCATACCACCATGACCACT
AGGTTGTACGGATGGGCAACAACCACATTGAGACCATAGAAGTAGGCGCC
TTCTCCAACTTGTCCAACTCTATCATTTTCCACCTGGAAAACAATCACAT
CCGGGAGATCAGGAAAGGCGTGTTCGGTGCTCCACAAGGAGCCACGCAAA
TATGGTTACAGAATAACAACATTTCTGTCATTGAACCCAGTGTGTTTTCG
GCATTCAGCAAAATGTACATGCTCCTACTTGACAACAACGTTCTGTCTAC
CATTACTGGCGCGCTGCAGGGTTTAGATACTGCAGAAGTAATAAGCGTAA
AGAGCAACCAGATAGTGGCACTGGCGGAGAACACTTTCAAAGGACTTCAC
AAACTTAGTAGTCTGGACCTGTCTGACAACCAACTTGGCGCCATCACTGG
ACAGGTGTTCGCTAACCTCTCAAGTCTTAAGTCTCTTGACCTTCACAACA
ACAAGCTTGTCCGCATGGACTCCCCGCTACCTAACGGGATAGGACAAGTG
ATGCTGTCCTCTAACCTGCTTTCCCAAGTACCACCGCTACCGGGCGCTCT
TGACATGCTAGACCTGTCGCACAACCCGCTGGAGTCGCTCGTACAGGGAC
AGTTCTCCCATATCCCCAGCATCACCACCCTTGGTCTCTCTGGTATAAAG
TACTTCATAGAGAAAGGCACCATTGACACGGACGTGTTTACTGGACTCGG
CAGGCTGGGAACTTTGAACCTCGCCGATAACAAGCTTACTCGGGTCCCGT
CGGAAGCACTCGGGAAAATCAACCAGTTGAACACGTTGAATCTGTCTGGA
AACGAGATCACAAATCTCCATCCAAGTGACTTTGACAACCAGACGACGAT
TAGAACGCTGAACCTTAAGTAAGTTGAATGATTCTTTTTGTCCCACGAAT
TTGCTAATGCTTAGAAAGCTGAATGCTATAAGAAAAGTATCAAAGTAGCA
GAAAAAAGGACATCAATCGAACAGAAGACATATCCCAATCTAACAAAGAC
TGTTCTAAAGATTTTCCCTTTCCTGAATGTTAAACTTTGTGACAAACTTC
ACTTCATTTTAGCGGCAACAATCTGACGTCAGTGCCCGAGGCTGTGTTTG
ACAGGCTAACACGGCTGTACGAAGTGGACTTGTCCGACAACCCTATCGTA
TATGTGGGTCCAGGGGCTTTCAGGGGCGGAGAGCTATTCAGTGTTCACTT
GGATCACACGAAACTACGTATCATAGGTAAGAAACAAAGCTCAACGTAAT
GGTATGACCCGACGTAAACTCATTCAGGTCATAGGTATGGACTGGGACGA
TCTCTAAGTCATATATATCAAAGTGCGATTAAATGTAGCTCAGCTTAATT
ACCGCATGAAAAAATACACTGATGATCAAAACAAACAAACAAACAAACAA
ACAAACAAACAAGCAAGCAGCATACGGCTGAACACAGCAAACAAACAGCT
AGAGTGTGATGGTGCCTTATGTTTTTTACGCACTTTTAGACGGAACTGCC
TTCAATGAATCAGTTGAGGTGAAGTGGCTGCAGCTGAACAGCAACTATCT
GCAGTTCCTGCCGGGAAGAATCTTCAAGCCTCTAACTTTTTACGGAGACC
TGNGCCTCTAACTTTCTACGGAGACCTGTTGGAGTTTGAAGACATGACTA
ACAACCCTTGGGCGTGTGACTGTCAGATGTACGAGTACGCGCAATATGCA
AGATCGCAGGCGGTATGTATAATTTTTGGGGACACTACAATTGTGTTCAG
TATATAAGAATTCAAATTATTTGATACTCACAGGCATGTTTCTTCCGCGG
TCGTGGATGGAGACGACAAAACTTCTCGCAAGACGAACGTGAACCGGTAT
TGAACTTTGACATTGTCCAGCATTCTCGATTAGGCCAGGGAACAATTTTA
AGGAGAAGCTTATTGCATTTCAAGAAGACTGAACTTGCCCTTTTATTTCA
TAACTTTGCAACATTGTTCCTTCAGGCCGTTCATCTCAGCACTATAAAAT
GCGCCGGTCCAGGAAACTTGACAGGACAGGTGGTGCGGAAGGTCCCACTG
GATGCGTTCAAATGCGACTGTCCGCACTACTCTGTACCGACCATAGACAC
CAGGGGCAGCTCAGCATCGGTTCCTGTGGGGCAAGGGGCATTGCTCAAGT
GTAAGGTAGGAGGCCTGTCACATCAATCACGATGTCTGCTTTTCTCAAAA
TTACAACATACGCACTACAAAATGATACCTATCGTAATATAGGCAGTTTT
AGATAATAACAAGAGCTATCTACCACTAAAAAACCAATACCACAGTATGT
CCAGAATACGAGATATCAAAACCGGAAGTTCCACTGCAGTACCATAACAA
GCTGCTAGGGGCCCCAAACTCCAATCATTCTGGGGTCTTATCACCTCCCG
ACATACCAAATATCAAAACAATCCACCTAGGCATTATCGAGTTATCGTGG
GTCACAAACACATACACAGAAATACGCACCCCAAAACATAACCTTCTTAG
CGAAGGTAACAATAATCATTCCAATAAATCCCCCCCCCCCCACCCCCGTT
AGGTCATGGCCTGCCCTGAAGCAGCGGTCATCTGGACGACTCCTTCCGGC
GTCAGTCTAACCTCCGACTCCCAACATCCGGGTCTCAATGTCCTGTCAGA
CGGAAGTCTAGTCGTCGTGTCAGCGTCACCAGAGGACTCAGGCACCTACA
GCTGCATGGCGGCCAACTACCTCGGTAAGGCTACGGCAACGGTCAACCTC
AAGGTCACTAACGGGCCCCAGACCACCACGGACACGGGTGTGACCACGAC
CGGATGAGTCGATGAGAGCTAAAACAGGACCGAAAATGTTCACAGCTGAA
TCCAGAATCAGAAGGACGAGGAGAAATATTCACATCCTGAGATACCTCCT
CACCATTCACGGATAACAACCCTTTGTTACGATATAAGGGAAACGTCAAA
GGCCTCCACACGAGCTACTTTATGACATAGCGATTCTTCAAATGTTGATA
ATTTGTTCTTTACTTACAGCCAACACAGCTGCATTCTATTATTTGAACGA
GACAGGGAAACTAAAATATATGTGGAGAAAAATGAAAACATTTGGAGAAA
TATAACAAAGCCAACAAAGACGGATACAACACATAGTAAGTATAAAGCAG
TAAAGCAATGTTTACTTTCAACATAGATTATGGCATGGAAGCAATTGTTT
TCCTATTACAAATGATGTCATTTGAAATAAAGGAACTTTTTTGCTTCTGC
GTACTATCCATCTATATCTAATGTGAATACATATTTTGTTACGTTTCCGT
CAATGCCTATGACAGGCCTAAGGTGAAAGTTTACAATTGCAGGTGAGGCA
GTTACCTGTCTGGCTTATTCCTACTGACATGACCCCGTCCTATTGCCCTG
AGGGAGCAAGTCTAATATTTGCAGACGACCACGTGTTTATTTTGCGCTCG
GTGCTGGTTTGACTTTGCACCTTCAGCAGCCAGGTAAGAGACAGAAAACT
TTGAACTCTGTTTTATTAGGACTGGAGCAGAATACCCGTGTGGCTGGACC
TGCGATAGGTACAACATACTTCTTTGGTCAATCTACATTTTTAGTCACGG
TTATAACTGAGTGTCTGAAAATGTGCCTGTTGAGTTAACCCGATGATCCA
TATACTAGTATTTGGAAGGCTTTTCCTTGTCGAATTAATGGTGAACTTCG
ATGTTTGTAAAATACCTAAGGTTGACTGGATGTCAACGTTATATTTGTAT
GTGACTACAGTTCCACTTGCAATGTAAGCAAACTAATAGGGTTTGTATGT
GCCCTTAGTTCTTCTTCATAAGGCGAGCACGTAGGTTTAGATTCTGTTTA
TATAGCGCGGCAGACATATTGGACTGCTCGGGCACGTAATTGGGGCGGGG
TAGTGTCAACTTTGAAAAATATACAACCAGAGGGTCTTATATTGAAGAAC
GCGTTAAACAGTCGATTTTAATCGTTTTCGTCGGATGTTCTGTCAACGTC
ATGGCACGTATACACTGACACCCCTCTGGTGTGTTTCCTACGGTTGCATT
TCCGCTGAATTTGTTACTTTGGAAGAAATATCGGTAGATAAACATGACAG
AATAAAGAAGATCGTGTTCAAGAAATTCTGTACACCATACGTATACCTTG
AATTTCAGGTCTACGAGCATGATGTTTGACGTGCAGATCCTCACGCTCTT
CTGCGTCGCTACGTCTCTGGCTGGTGTGCACGCCTGCCCCCCAGAATGTA
CGTGTTTTCACGATGTACCCAGTGTGCATTGCAACACCCCAACTCTGGAC
CATATTCCTAAGGGCATCCCGAGTAACACTACTCTGCTGCAGATGAAAGG
TATGTAAACAAAGCACAACAGGCAGTGGGAGATGAAAACCTGACGTTCCT
AGACAAAAAGTTCTGCCATTGTTGGCATCTACGTTCTACTATACAACACT
TTCGATAGTTTGTTTGTGAAATTTCTGATAAGTATCTCACGACTTCAGAT
GTTCCCTTGAAATGGTTAACATTGTATTTGCATTACTCTAACGCAGGTAC
ACAACTCCGTGTAGTTAGGAAAGGTGACCTGGCAGGACTCCCACTGCTGA
AAATCTTGTATCTCTTCAACAACAAACTACAAACAATCGAGGTCGGCGCC
TTTGACGATGTTCCAGTAATTGTGGACATCGAGATCGGGAACAACCAGAT
ATCCGACCTCCCTCCGGGTGTCTTCAGGGGCTGCGGTCAGCTACAGACTG
TGGCTGCAGATGGAAATCAGCTCACTAAAATACGGCAGGGAGTTTTCAAA
GACTTACCAAAGTTGCAGGTATGTCACGTTTTCGAATTGTTATTGTTTAG
GCACACAGCAGAACTACATAGAAGGTCGATGAATGTTAGTGAAAGTAGTC
TTCAATCACTGACGAAAGATAGTGGATGCTATCTGAACAAATCTATCCAG
TTGCTTGAGTATTTTTTGCATTGTGTACATAATGAATGTATCAAAGAACT
CTATGATATGATTCTCAGATATCCTCACATAGAATCAAAATGGCGTTCTG
GACACAGAAAGACCTATTGATGATAGCAAAACAGCACTCAAATAATTTCA
TAAAACAGACTTTAGAACATATAACCTCAGCATTTTCCTCCCAGGCTACC
GTTCGAGGTGTGAACATTACAAATAACCTTCGTTTCTATCATGCTGTTTA
GGAAGTGCGGTTCACCTACACACAAATCGAGACCATAGAAGTGGGAGCTT
TCTCCAACCTCTCCAACTCCATGTACTTCAGTTTGCAAAACAACCAGATC
CGGGTGATAAGGAAAGGCGCGTTCGGTGCTCCGGCTGGGGCCAAACAACT
CCT Coding sequence (CDS) from alignment at Sc0000146:499778..505830- >transcript:BL96842_cuf3 ID=transcript:BL96842_cuf3|Name=transcript:BL96842_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1251bp|location=Sequence derived from alignment at Sc0000146:499778..505830- (Branchiostoma lanceolatum)
CAACTCCGTGTAGTTAGGAAAGGTGACCTGGCAGGACTCCCACTGCTGAA
AATCTTGTATCTCTTCAACAACACACTACAAACAATCGAGGTCGGCGCCT
TTGACGATGTCCCAGCAATTGTGGACATCGAGATCGGGAACAACCAGATA
TCCGACCTCCCTCCGGGTGTCTTCAGGGGCTGCGGTCAGCTACAGACTGT
GGCTGCAGATGGAAATCAGCTCACTAAAATACGGCAGGGAGTTTTCAAAG
ACTTACCAAAGTTGCAGGAAGTGCGGTTCACCTACACACAAATCGAGACC
ATAGAAGTGGGAGCTTTCTCCAACCTCTCCAACTCCATGTACTTCAGTTT
GCAAAACAACCAGATCCGGGTGATAAGGAAAGGCGCGTTCGGTGCTCCGG
CTGGGGCCAAACAACTCCAACTCCGTGTAGTTAGGAAAGGTGACCTGGCA
GGACTCCCACTGCTGAAAATCTTGTATCTCTTCAACAACACACTACAAAC
AATCGAGGTCGGCGCCTTTGACGATGTCCCAGCAATTGTGGACATCGAGA
TCGGGAACAACCAGATATCCGACCTCCCTCCGGGTGTCTTCAGGGGCTGC
GGTCAGCTACAGACTGTGGCTGCAGATGGAAATCAGCTCACTAAAATACG
GCAGGGAGTTTTCAAAGACTTACCAAAGTTGCAGGAAGTGCGGTTCACCT
ACACACAAATCGAGACCATAGAAGTGGGAGCTTTCTCCAACCTCTCCAAC
TCCATGTACTTCAGTTTGCAAAACAACCAGATCCGGGTGATAAGGAAAGG
CGCGTTCGGTGCTCCGGCTGGGGCCAAACAACTCCAACTCCGTGTAGTTA
GGAAAGGTGACCTGGCAGGACTCCCACTGCTGAAAATCTTGTATCTCTTC
AACAACACACTACAAACAATCGAGGTCGGCGCCTTTGACGATGTCCCAGC
AATTGTGGACATCGAGATCGGGAACAACCAGATATCCGACCTCCCTCCGG
GTGTCTTCAGGGGCTGCGGTCAGCTACAGACTGTGGCTGCAGATGGAAAT
CAGCTCACTAAAATACGGCAGGGAGTTTTCAAAGACTTACCAAAGTTGCA
GGAAGTGCGGTTCACCTACACACAAATCGAGACCATAGAAGTGGGAGCTT
TCTCCAACCTCTCCAACTCCATGTACTTCAGTTTGCAAAACAACCAGATC
CGGGTGATAAGGAAAGGCGCGTTCGGTGCTCCGGCTGGGGCCAAACAACT
C
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000146 | genome | Sc0000146:499778..505830 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96842_cuf3 |
| Biotype | protein_coding |
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