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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96841_cuf0 >transcript:BL96841_cuf0-protein ID=transcript:BL96841_cuf0-protein|Name=transcript:BL96841_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=280bp
DNNLTRVPVEALGKINQLETLNLSGNEIPTLNPNDFVNMTNITILDLSGN NLTSVPEAVFDKLMRMYELDLSNNPIVYVGPRAFSKDLAAVHLDHTKLRI IDGTAFNESVEVKWLRLNNNYLQFLPGGIYKPLTFYGDLMELEDMTNNPW TCDCQMYEYAQYVRSPAAFALHTLECAGPGSLKGQVLRKVPLNTLKCDCP HTSTPTIDTRGSSTVVPTGHRAVLKCQVMACPEAAVIWTTPTGVSLTSDS HHPGLRKSSRRVSVIRGLRHLQLHGGQLPR Run BLAST on NCBI mRNA from alignment at Sc0000146:496581..499001- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96841_cuf0 ID=transcript:BL96841_cuf0|Name=transcript:BL96841_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2421bp|location=Sequence derived from alignment at Sc0000146:496581..499001- (Branchiostoma lanceolatum) CCGATAACAACCTTACTCGGGTCCCGGTGGAAGCGCTCGGGAAGATCAAC
CAGTTGGAAACACTCAACTTATCAGGAAACGAGATCCCGACTCTCAATCC
TAATGATTTCGTCAACATGACGAACATTACAATACTCGATCTTAGGTAAG
CAATGAAATCTCTTTTGGTGTGTGCAAATATTATTGCAGTAAATAAGCCT
GAAGATATGTCAATACGTTGTGGTAATTATCATCAACGGTTGCATATGCT
GTGCTGGGTTTTAGCTCTACATGTGGACCATCTGATCATGATACAGAACA
ACTCTTAATAGACGTTGCATTCTGATACAGTCTGATTAAATTGCAGTGGA
AACAATCTGACGTCAGTCCCGGAGGCTGTCTTCGACAAGCTGATGCGGAT
GTACGAATTGGACCTCTCCAACAACCCCATTGTTTATGTTGGCCCAAGGG
CCTTTAGCAAAGATCTTGCTGCCGTCCATTTGGATCATACAAAACTTCGT
ATCATAGGTAAGGAATGCAACACTAAATATTTGCTGCGCGTTGTGGTTTT
GGAAGAAAAGCACTGTGACATTAGAACTATAACGTTACACCATGTTTCAT
TTAGAAATGCAGTCCATCAACTAATGATGAGAACAGAAATAAAGATCAAT
TCACTGTAGTATGAAAAAAGATTCTCCTTTCTTCATTGACACTGTAGATG
GAACTGCCTTCAATGAATCAGTTGAGGTGAAGTGGCTGAGGCTGAACAAC
AACTATCTGCAGTTTCTGCCGGGCGGGATCTACAAACCTTTGACTTTCTA
CGGAGACTTGATGGAGCTTGAGGACATGACTAACAACCCTTGGACGTGTG
ACTGTCAGATGTACGAGTACGCGCAGTATGTGAGATCCCCTGCGGTAGGT
ATGGTTTTATTCTCCATGTTAACAGTAATTTGACGTCATGGTCATTTTCA
TTTTAATTTGGGTACTATTCGCAATGGGTACTCTAAACACAGCGCTCTTC
ATAACTTTTCAACTCTATTTATGCAGGCCTTTGCCCTCCATACGCTCGAA
TGTGCGGGCCCAGGGAGTTTGAAGGGACAGGTTCTGCGGAAGGTCCCCCT
GAATACTCTGAAGTGTGACTGTCCGCACACATCCACCCCAACCATAGACA
CGAGAGGAAGCTCCACCGTTGTTCCTACCGGGCACCGAGCAGTGCTCAAG
TGTCAGGTAACGTGAAAGTTTTATTCACAGTGTCTGTTTGGTTGCTGTTT
ACGCCGATACAGACCCTTTTCCCACGACTGAATGTTATTTTGTCAACTTC
CTACTTCAGGTGATGGCCTGCCCTGAAGCAGCGGTCATCTGGACGACCCC
TACCGGCGTGAGTCTGACCTCCGACTCCCATCATCCGGGTCTCCGGAAGT
CTAGTCGTCGTGTCAGCGTCATCAGAGGACTCAGGCACTTACAGCTGCAT
GGCGGCCAACTACCTCGGTAAGGCTACGGCAACGGTCAGCCTCAGGGTCA
CCGACGGGCCCCAGACCACCGACATGGGTGTGACTACGACGTGACCAGTC
GTAAAACGGAGCTCATACGACGGAAATGAAAGAAAGGCGATCCATCGGTA
GCTCAAACTCTAAAAACCCCTCGGACAGTGATCAAACCTTTGTTACGACA
CGTAACACGTATTAAGTGAAACATATGATCACCAACGCTGCGCTTTTTTT
CTTGAGGTAGTCTTTCTTTGACAATTAATGAAAGCGGATGTCTCATCAGC
ACCACAGAGAGGGACAGTCGGTACTTTTATTGCGTCTCCTGCTCTAAATA
ATAGGTTCTTTTTCTGGCATGGCGCTTTGCCTCCACATTACGCTTTGATG
AATGTTGAGACTATTGCTGATATACTAATGGTAACATGAAAACATTATTG
GAAAGTAATTCCAAAAAGGGAAATCCTCGCCAAACCTATCGGAACAAGAC
TAATATATATAAAAGGTCTATGTCATAAGGTATCGAAACCAAATCAGTAG
TATCGTAAGAGATTTTTTTAGGATTAAAGCAAAAGCCATATACGCAAATA
AATTGAATAAAATGTGTTCCCACATCTCCTAATCATGGCGCATAAGTAAT
TAGATAGATAAACTGTCTGAGCACAGATTGTAACAAAAGGCACATAGTCT
GTTCGTGTGCTAATATCGTAATTTTTGGTGAGCCTCCGGAGCGAGCCTAA
TGGTATAGTATTGTGTGCCGTCTGTGTAGATAGGCCGACTTTGCACAATT
GATCACTTTTCCTTGGATGCGTGGTTAAAAAACACACATTTTCTCCTAGT
CCGGAAAGCTTAAAGACAGGAATATGTTTGTACTATTAAGAAAAGGAGGG
GCAGTCACATTCCAGAAAGAGCACTGGAGGAGGTTACATTACAACGGTTT
GAAATTCCTGCGGGCCCTTGG Coding sequence (CDS) from alignment at Sc0000146:496581..499001- >transcript:BL96841_cuf0 ID=transcript:BL96841_cuf0|Name=transcript:BL96841_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4215bp|location=Sequence derived from alignment at Sc0000146:496581..499001- (Branchiostoma lanceolatum) GATAACAACCTTACTCGGGTCCCGGTGGAAGCGCTCGGGAAGATCAACCA GTTGGAAACACTCAACTTATCAGGAAACGAGATCCCGACTCTCAATCCTA ATGATTTCGTCAACATGACGAACATTACAATACTCGATCTTAGTGGAAAC AATCTGACGTCAGTCCCGGAGGCTGTCTTCGACAAGCTGATGCGGATGTA CGAATTGGACCTCTCCAACAACCCCATTGTTTATGTTGGCCCAAGGGCCT TTAGCAAAGATCTTGCTGCCGTCCATTTGGATCATACAAAACTTCGTATC ATAGATGGAACTGCCTTCAATGAATCAGTTGAGGTGAAGTGGCTGAGGCT GAACAACAACTATCTGCAGTTTCTGCCGGGCGGGATCTACAAACCTTTGA CTTTCTACGGAGACTTGATGGAGCTTGAGGACATGACTAACAACCCTTGG ACGTGTGACTGTCAGATGTACGAGTACGCGCAGTATGTGAGATCCCCTGC GGCCTTTGCCCTCCATACGCTCGAATGTGCGGGCCCAGGGAGTTTGAAGG GACAGGTTCTGCGGAAGGTCCCCCTGAATACTCTGAAGTGTGACTGTCCG CACACATCCACCCCAACCATAGACACGAGAGGAAGCTCCACCGTTGTTCC TACCGGGCACCGAGCAGTGCTCAAGTGTCAGGTGATGGCCTGCCCTGAAG CAGCGGTCATCTGGACGACCCCTACCGGCGTGAGTCTGACCTCCGACTCC CATCATCCGGGTCTCCGGAAGTCTAGTCGTCGTGTCAGCGTCATCAGAGG ACTCAGGCACTTACAGCTGCATGGCGGCCAACTACCTCGGTAAGATAACA ACCTTACTCGGGTCCCGGTGGAAGCGCTCGGGAAGATCAACCAGTTGGAA ACACTCAACTTATCAGGAAACGAGATCCCGACTCTCAATCCTAATGATTT CGTCAACATGACGAACATTACAATACTCGATCTTAGTGGAAACAATCTGA CGTCAGTCCCGGAGGCTGTCTTCGACAAGCTGATGCGGATGTACGAATTG GACCTCTCCAACAACCCCATTGTTTATGTTGGCCCAAGGGCCTTTAGCAA AGATCTTGCTGCCGTCCATTTGGATCATACAAAACTTCGTATCATAGATG GAACTGCCTTCAATGAATCAGTTGAGGTGAAGTGGCTGAGGCTGAACAAC AACTATCTGCAGTTTCTGCCGGGCGGGATCTACAAACCTTTGACTTTCTA CGGAGACTTGATGGAGCTTGAGGACATGACTAACAACCCTTGGACGTGTG ACTGTCAGATGTACGAGTACGCGCAGTATGTGAGATCCCCTGCGGCCTTT GCCCTCCATACGCTCGAATGTGCGGGCCCAGGGAGTTTGAAGGGACAGGT TCTGCGGAAGGTCCCCCTGAATACTCTGAAGTGTGACTGTCCGCACACAT CCACCCCAACCATAGACACGAGAGGAAGCTCCACCGTTGTTCCTACCGGG CACCGAGCAGTGCTCAAGTGTCAGGTGATGGCCTGCCCTGAAGCAGCGGT CATCTGGACGACCCCTACCGGCGTGAGTCTGACCTCCGACTCCCATCATC CGGGTCTCCGGAAGTCTAGTCGTCGTGTCAGCGTCATCAGAGGACTCAGG CACTTACAGCTGCATGGCGGCCAACTACCTCGGTAAGATAACAACCTTAC TCGGGTCCCGGTGGAAGCGCTCGGGAAGATCAACCAGTTGGAAACACTCA ACTTATCAGGAAACGAGATCCCGACTCTCAATCCTAATGATTTCGTCAAC ATGACGAACATTACAATACTCGATCTTAGTGGAAACAATCTGACGTCAGT CCCGGAGGCTGTCTTCGACAAGCTGATGCGGATGTACGAATTGGACCTCT CCAACAACCCCATTGTTTATGTTGGCCCAAGGGCCTTTAGCAAAGATCTT GCTGCCGTCCATTTGGATCATACAAAACTTCGTATCATAGATGGAACTGC CTTCAATGAATCAGTTGAGGTGAAGTGGCTGAGGCTGAACAACAACTATC TGCAGTTTCTGCCGGGCGGGATCTACAAACCTTTGACTTTCTACGGAGAC TTGATGGAGCTTGAGGACATGACTAACAACCCTTGGACGTGTGACTGTCA GATGTACGAGTACGCGCAGTATGTGAGATCCCCTGCGGCCTTTGCCCTCC ATACGCTCGAATGTGCGGGCCCAGGGAGTTTGAAGGGACAGGTTCTGCGG AAGGTCCCCCTGAATACTCTGAAGTGTGACTGTCCGCACACATCCACCCC AACCATAGACACGAGAGGAAGCTCCACCGTTGTTCCTACCGGGCACCGAG CAGTGCTCAAGTGTCAGGTGATGGCCTGCCCTGAAGCAGCGGTCATCTGG ACGACCCCTACCGGCGTGAGTCTGACCTCCGACTCCCATCATCCGGGTCT CCGGAAGTCTAGTCGTCGTGTCAGCGTCATCAGAGGACTCAGGCACTTAC AGCTGCATGGCGGCCAACTACCTCGGTAAGATAACAACCTTACTCGGGTC CCGGTGGAAGCGCTCGGGAAGATCAACCAGTTGGAAACACTCAACTTATC AGGAAACGAGATCCCGACTCTCAATCCTAATGATTTCGTCAACATGACGA ACATTACAATACTCGATCTTAGTGGAAACAATCTGACGTCAGTCCCGGAG GCTGTCTTCGACAAGCTGATGCGGATGTACGAATTGGACCTCTCCAACAA CCCCATTGTTTATGTTGGCCCAAGGGCCTTTAGCAAAGATCTTGCTGCCG TCCATTTGGATCATACAAAACTTCGTATCATAGATGGAACTGCCTTCAAT GAATCAGTTGAGGTGAAGTGGCTGAGGCTGAACAACAACTATCTGCAGTT TCTGCCGGGCGGGATCTACAAACCTTTGACTTTCTACGGAGACTTGATGG AGCTTGAGGACATGACTAACAACCCTTGGACGTGTGACTGTCAGATGTAC GAGTACGCGCAGTATGTGAGATCCCCTGCGGCCTTTGCCCTCCATACGCT CGAATGTGCGGGCCCAGGGAGTTTGAAGGGACAGGTTCTGCGGAAGGTCC CCCTGAATACTCTGAAGTGTGACTGTCCGCACACATCCACCCCAACCATA GACACGAGAGGAAGCTCCACCGTTGTTCCTACCGGGCACCGAGCAGTGCT CAAGTGTCAGGTGATGGCCTGCCCTGAAGCAGCGGTCATCTGGACGACCC CTACCGGCGTGAGTCTGACCTCCGACTCCCATCATCCGGGTCTCCGGAAG TCTAGTCGTCGTGTCAGCGTCATCAGAGGACTCAGGCACTTACAGCTGCA TGGCGGCCAACTACCTCGGTAAGATAACAACCTTACTCGGGTCCCGGTGG AAGCGCTCGGGAAGATCAACCAGTTGGAAACACTCAACTTATCAGGAAAC GAGATCCCGACTCTCAATCCTAATGATTTCGTCAACATGACGAACATTAC AATACTCGATCTTAGTGGAAACAATCTGACGTCAGTCCCGGAGGCTGTCT TCGACAAGCTGATGCGGATGTACGAATTGGACCTCTCCAACAACCCCATT GTTTATGTTGGCCCAAGGGCCTTTAGCAAAGATCTTGCTGCCGTCCATTT GGATCATACAAAACTTCGTATCATAGATGGAACTGCCTTCAATGAATCAG TTGAGGTGAAGTGGCTGAGGCTGAACAACAACTATCTGCAGTTTCTGCCG GGCGGGATCTACAAACCTTTGACTTTCTACGGAGACTTGATGGAGCTTGA GGACATGACTAACAACCCTTGGACGTGTGACTGTCAGATGTACGAGTACG CGCAGTATGTGAGATCCCCTGCGGCCTTTGCCCTCCATACGCTCGAATGT GCGGGCCCAGGGAGTTTGAAGGGACAGGTTCTGCGGAAGGTCCCCCTGAA TACTCTGAAGTGTGACTGTCCGCACACATCCACCCCAACCATAGACACGA GAGGAAGCTCCACCGTTGTTCCTACCGGGCACCGAGCAGTGCTCAAGTGT CAGGTGATGGCCTGCCCTGAAGCAGCGGTCATCTGGACGACCCCTACCGG CGTGAGTCTGACCTCCGACTCCCATCATCCGGGTCTCCGGAAGTCTAGTC GTCGTGTCAGCGTCATCAGAGGACTCAGGCACTTACAGCTGCATGGCGGC CAACTACCTCGGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000146 | genome | Sc0000146:496581..499001 - |
Properties
Property Name | Value |
Transcript id | BL96841_cuf0 |
Biotype | protein_coding |
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