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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96841_cuf0 >transcript:BL96841_cuf0-protein ID=transcript:BL96841_cuf0-protein|Name=transcript:BL96841_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=280bp
DNNLTRVPVEALGKINQLETLNLSGNEIPTLNPNDFVNMTNITILDLSGN
NLTSVPEAVFDKLMRMYELDLSNNPIVYVGPRAFSKDLAAVHLDHTKLRI
IDGTAFNESVEVKWLRLNNNYLQFLPGGIYKPLTFYGDLMELEDMTNNPW
TCDCQMYEYAQYVRSPAAFALHTLECAGPGSLKGQVLRKVPLNTLKCDCP
HTSTPTIDTRGSSTVVPTGHRAVLKCQVMACPEAAVIWTTPTGVSLTSDS
HHPGLRKSSRRVSVIRGLRHLQLHGGQLPR Run BLAST on NCBI mRNA from alignment at Sc0000146:496581..499001- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96841_cuf0 ID=transcript:BL96841_cuf0|Name=transcript:BL96841_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2421bp|location=Sequence derived from alignment at Sc0000146:496581..499001- (Branchiostoma lanceolatum)
CCGATAACAACCTTACTCGGGTCCCGGTGGAAGCGCTCGGGAAGATCAAC
CAGTTGGAAACACTCAACTTATCAGGAAACGAGATCCCGACTCTCAATCC
TAATGATTTCGTCAACATGACGAACATTACAATACTCGATCTTAGGTAAG
CAATGAAATCTCTTTTGGTGTGTGCAAATATTATTGCAGTAAATAAGCCT
GAAGATATGTCAATACGTTGTGGTAATTATCATCAACGGTTGCATATGCT
GTGCTGGGTTTTAGCTCTACATGTGGACCATCTGATCATGATACAGAACA
ACTCTTAATAGACGTTGCATTCTGATACAGTCTGATTAAATTGCAGTGGA
AACAATCTGACGTCAGTCCCGGAGGCTGTCTTCGACAAGCTGATGCGGAT
GTACGAATTGGACCTCTCCAACAACCCCATTGTTTATGTTGGCCCAAGGG
CCTTTAGCAAAGATCTTGCTGCCGTCCATTTGGATCATACAAAACTTCGT
ATCATAGGTAAGGAATGCAACACTAAATATTTGCTGCGCGTTGTGGTTTT
GGAAGAAAAGCACTGTGACATTAGAACTATAACGTTACACCATGTTTCAT
TTAGAAATGCAGTCCATCAACTAATGATGAGAACAGAAATAAAGATCAAT
TCACTGTAGTATGAAAAAAGATTCTCCTTTCTTCATTGACACTGTAGATG
GAACTGCCTTCAATGAATCAGTTGAGGTGAAGTGGCTGAGGCTGAACAAC
AACTATCTGCAGTTTCTGCCGGGCGGGATCTACAAACCTTTGACTTTCTA
CGGAGACTTGATGGAGCTTGAGGACATGACTAACAACCCTTGGACGTGTG
ACTGTCAGATGTACGAGTACGCGCAGTATGTGAGATCCCCTGCGGTAGGT
ATGGTTTTATTCTCCATGTTAACAGTAATTTGACGTCATGGTCATTTTCA
TTTTAATTTGGGTACTATTCGCAATGGGTACTCTAAACACAGCGCTCTTC
ATAACTTTTCAACTCTATTTATGCAGGCCTTTGCCCTCCATACGCTCGAA
TGTGCGGGCCCAGGGAGTTTGAAGGGACAGGTTCTGCGGAAGGTCCCCCT
GAATACTCTGAAGTGTGACTGTCCGCACACATCCACCCCAACCATAGACA
CGAGAGGAAGCTCCACCGTTGTTCCTACCGGGCACCGAGCAGTGCTCAAG
TGTCAGGTAACGTGAAAGTTTTATTCACAGTGTCTGTTTGGTTGCTGTTT
ACGCCGATACAGACCCTTTTCCCACGACTGAATGTTATTTTGTCAACTTC
CTACTTCAGGTGATGGCCTGCCCTGAAGCAGCGGTCATCTGGACGACCCC
TACCGGCGTGAGTCTGACCTCCGACTCCCATCATCCGGGTCTCCGGAAGT
CTAGTCGTCGTGTCAGCGTCATCAGAGGACTCAGGCACTTACAGCTGCAT
GGCGGCCAACTACCTCGGTAAGGCTACGGCAACGGTCAGCCTCAGGGTCA
CCGACGGGCCCCAGACCACCGACATGGGTGTGACTACGACGTGACCAGTC
GTAAAACGGAGCTCATACGACGGAAATGAAAGAAAGGCGATCCATCGGTA
GCTCAAACTCTAAAAACCCCTCGGACAGTGATCAAACCTTTGTTACGACA
CGTAACACGTATTAAGTGAAACATATGATCACCAACGCTGCGCTTTTTTT
CTTGAGGTAGTCTTTCTTTGACAATTAATGAAAGCGGATGTCTCATCAGC
ACCACAGAGAGGGACAGTCGGTACTTTTATTGCGTCTCCTGCTCTAAATA
ATAGGTTCTTTTTCTGGCATGGCGCTTTGCCTCCACATTACGCTTTGATG
AATGTTGAGACTATTGCTGATATACTAATGGTAACATGAAAACATTATTG
GAAAGTAATTCCAAAAAGGGAAATCCTCGCCAAACCTATCGGAACAAGAC
TAATATATATAAAAGGTCTATGTCATAAGGTATCGAAACCAAATCAGTAG
TATCGTAAGAGATTTTTTTAGGATTAAAGCAAAAGCCATATACGCAAATA
AATTGAATAAAATGTGTTCCCACATCTCCTAATCATGGCGCATAAGTAAT
TAGATAGATAAACTGTCTGAGCACAGATTGTAACAAAAGGCACATAGTCT
GTTCGTGTGCTAATATCGTAATTTTTGGTGAGCCTCCGGAGCGAGCCTAA
TGGTATAGTATTGTGTGCCGTCTGTGTAGATAGGCCGACTTTGCACAATT
GATCACTTTTCCTTGGATGCGTGGTTAAAAAACACACATTTTCTCCTAGT
CCGGAAAGCTTAAAGACAGGAATATGTTTGTACTATTAAGAAAAGGAGGG
GCAGTCACATTCCAGAAAGAGCACTGGAGGAGGTTACATTACAACGGTTT
GAAATTCCTGCGGGCCCTTGG Coding sequence (CDS) from alignment at Sc0000146:496581..499001- >transcript:BL96841_cuf0 ID=transcript:BL96841_cuf0|Name=transcript:BL96841_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4215bp|location=Sequence derived from alignment at Sc0000146:496581..499001- (Branchiostoma lanceolatum)
GATAACAACCTTACTCGGGTCCCGGTGGAAGCGCTCGGGAAGATCAACCA
GTTGGAAACACTCAACTTATCAGGAAACGAGATCCCGACTCTCAATCCTA
ATGATTTCGTCAACATGACGAACATTACAATACTCGATCTTAGTGGAAAC
AATCTGACGTCAGTCCCGGAGGCTGTCTTCGACAAGCTGATGCGGATGTA
CGAATTGGACCTCTCCAACAACCCCATTGTTTATGTTGGCCCAAGGGCCT
TTAGCAAAGATCTTGCTGCCGTCCATTTGGATCATACAAAACTTCGTATC
ATAGATGGAACTGCCTTCAATGAATCAGTTGAGGTGAAGTGGCTGAGGCT
GAACAACAACTATCTGCAGTTTCTGCCGGGCGGGATCTACAAACCTTTGA
CTTTCTACGGAGACTTGATGGAGCTTGAGGACATGACTAACAACCCTTGG
ACGTGTGACTGTCAGATGTACGAGTACGCGCAGTATGTGAGATCCCCTGC
GGCCTTTGCCCTCCATACGCTCGAATGTGCGGGCCCAGGGAGTTTGAAGG
GACAGGTTCTGCGGAAGGTCCCCCTGAATACTCTGAAGTGTGACTGTCCG
CACACATCCACCCCAACCATAGACACGAGAGGAAGCTCCACCGTTGTTCC
TACCGGGCACCGAGCAGTGCTCAAGTGTCAGGTGATGGCCTGCCCTGAAG
CAGCGGTCATCTGGACGACCCCTACCGGCGTGAGTCTGACCTCCGACTCC
CATCATCCGGGTCTCCGGAAGTCTAGTCGTCGTGTCAGCGTCATCAGAGG
ACTCAGGCACTTACAGCTGCATGGCGGCCAACTACCTCGGTAAGATAACA
ACCTTACTCGGGTCCCGGTGGAAGCGCTCGGGAAGATCAACCAGTTGGAA
ACACTCAACTTATCAGGAAACGAGATCCCGACTCTCAATCCTAATGATTT
CGTCAACATGACGAACATTACAATACTCGATCTTAGTGGAAACAATCTGA
CGTCAGTCCCGGAGGCTGTCTTCGACAAGCTGATGCGGATGTACGAATTG
GACCTCTCCAACAACCCCATTGTTTATGTTGGCCCAAGGGCCTTTAGCAA
AGATCTTGCTGCCGTCCATTTGGATCATACAAAACTTCGTATCATAGATG
GAACTGCCTTCAATGAATCAGTTGAGGTGAAGTGGCTGAGGCTGAACAAC
AACTATCTGCAGTTTCTGCCGGGCGGGATCTACAAACCTTTGACTTTCTA
CGGAGACTTGATGGAGCTTGAGGACATGACTAACAACCCTTGGACGTGTG
ACTGTCAGATGTACGAGTACGCGCAGTATGTGAGATCCCCTGCGGCCTTT
GCCCTCCATACGCTCGAATGTGCGGGCCCAGGGAGTTTGAAGGGACAGGT
TCTGCGGAAGGTCCCCCTGAATACTCTGAAGTGTGACTGTCCGCACACAT
CCACCCCAACCATAGACACGAGAGGAAGCTCCACCGTTGTTCCTACCGGG
CACCGAGCAGTGCTCAAGTGTCAGGTGATGGCCTGCCCTGAAGCAGCGGT
CATCTGGACGACCCCTACCGGCGTGAGTCTGACCTCCGACTCCCATCATC
CGGGTCTCCGGAAGTCTAGTCGTCGTGTCAGCGTCATCAGAGGACTCAGG
CACTTACAGCTGCATGGCGGCCAACTACCTCGGTAAGATAACAACCTTAC
TCGGGTCCCGGTGGAAGCGCTCGGGAAGATCAACCAGTTGGAAACACTCA
ACTTATCAGGAAACGAGATCCCGACTCTCAATCCTAATGATTTCGTCAAC
ATGACGAACATTACAATACTCGATCTTAGTGGAAACAATCTGACGTCAGT
CCCGGAGGCTGTCTTCGACAAGCTGATGCGGATGTACGAATTGGACCTCT
CCAACAACCCCATTGTTTATGTTGGCCCAAGGGCCTTTAGCAAAGATCTT
GCTGCCGTCCATTTGGATCATACAAAACTTCGTATCATAGATGGAACTGC
CTTCAATGAATCAGTTGAGGTGAAGTGGCTGAGGCTGAACAACAACTATC
TGCAGTTTCTGCCGGGCGGGATCTACAAACCTTTGACTTTCTACGGAGAC
TTGATGGAGCTTGAGGACATGACTAACAACCCTTGGACGTGTGACTGTCA
GATGTACGAGTACGCGCAGTATGTGAGATCCCCTGCGGCCTTTGCCCTCC
ATACGCTCGAATGTGCGGGCCCAGGGAGTTTGAAGGGACAGGTTCTGCGG
AAGGTCCCCCTGAATACTCTGAAGTGTGACTGTCCGCACACATCCACCCC
AACCATAGACACGAGAGGAAGCTCCACCGTTGTTCCTACCGGGCACCGAG
CAGTGCTCAAGTGTCAGGTGATGGCCTGCCCTGAAGCAGCGGTCATCTGG
ACGACCCCTACCGGCGTGAGTCTGACCTCCGACTCCCATCATCCGGGTCT
CCGGAAGTCTAGTCGTCGTGTCAGCGTCATCAGAGGACTCAGGCACTTAC
AGCTGCATGGCGGCCAACTACCTCGGTAAGATAACAACCTTACTCGGGTC
CCGGTGGAAGCGCTCGGGAAGATCAACCAGTTGGAAACACTCAACTTATC
AGGAAACGAGATCCCGACTCTCAATCCTAATGATTTCGTCAACATGACGA
ACATTACAATACTCGATCTTAGTGGAAACAATCTGACGTCAGTCCCGGAG
GCTGTCTTCGACAAGCTGATGCGGATGTACGAATTGGACCTCTCCAACAA
CCCCATTGTTTATGTTGGCCCAAGGGCCTTTAGCAAAGATCTTGCTGCCG
TCCATTTGGATCATACAAAACTTCGTATCATAGATGGAACTGCCTTCAAT
GAATCAGTTGAGGTGAAGTGGCTGAGGCTGAACAACAACTATCTGCAGTT
TCTGCCGGGCGGGATCTACAAACCTTTGACTTTCTACGGAGACTTGATGG
AGCTTGAGGACATGACTAACAACCCTTGGACGTGTGACTGTCAGATGTAC
GAGTACGCGCAGTATGTGAGATCCCCTGCGGCCTTTGCCCTCCATACGCT
CGAATGTGCGGGCCCAGGGAGTTTGAAGGGACAGGTTCTGCGGAAGGTCC
CCCTGAATACTCTGAAGTGTGACTGTCCGCACACATCCACCCCAACCATA
GACACGAGAGGAAGCTCCACCGTTGTTCCTACCGGGCACCGAGCAGTGCT
CAAGTGTCAGGTGATGGCCTGCCCTGAAGCAGCGGTCATCTGGACGACCC
CTACCGGCGTGAGTCTGACCTCCGACTCCCATCATCCGGGTCTCCGGAAG
TCTAGTCGTCGTGTCAGCGTCATCAGAGGACTCAGGCACTTACAGCTGCA
TGGCGGCCAACTACCTCGGTAAGATAACAACCTTACTCGGGTCCCGGTGG
AAGCGCTCGGGAAGATCAACCAGTTGGAAACACTCAACTTATCAGGAAAC
GAGATCCCGACTCTCAATCCTAATGATTTCGTCAACATGACGAACATTAC
AATACTCGATCTTAGTGGAAACAATCTGACGTCAGTCCCGGAGGCTGTCT
TCGACAAGCTGATGCGGATGTACGAATTGGACCTCTCCAACAACCCCATT
GTTTATGTTGGCCCAAGGGCCTTTAGCAAAGATCTTGCTGCCGTCCATTT
GGATCATACAAAACTTCGTATCATAGATGGAACTGCCTTCAATGAATCAG
TTGAGGTGAAGTGGCTGAGGCTGAACAACAACTATCTGCAGTTTCTGCCG
GGCGGGATCTACAAACCTTTGACTTTCTACGGAGACTTGATGGAGCTTGA
GGACATGACTAACAACCCTTGGACGTGTGACTGTCAGATGTACGAGTACG
CGCAGTATGTGAGATCCCCTGCGGCCTTTGCCCTCCATACGCTCGAATGT
GCGGGCCCAGGGAGTTTGAAGGGACAGGTTCTGCGGAAGGTCCCCCTGAA
TACTCTGAAGTGTGACTGTCCGCACACATCCACCCCAACCATAGACACGA
GAGGAAGCTCCACCGTTGTTCCTACCGGGCACCGAGCAGTGCTCAAGTGT
CAGGTGATGGCCTGCCCTGAAGCAGCGGTCATCTGGACGACCCCTACCGG
CGTGAGTCTGACCTCCGACTCCCATCATCCGGGTCTCCGGAAGTCTAGTC
GTCGTGTCAGCGTCATCAGAGGACTCAGGCACTTACAGCTGCATGGCGGC
CAACTACCTCGGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000146 | genome | Sc0000146:496581..499001 - |
Properties
| Property Name | Value |
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| Transcript id | BL96841_cuf0 |
| Biotype | protein_coding |
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