|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96826_cuf4 >transcript:BL96826_cuf4-protein ID=transcript:BL96826_cuf4-protein|Name=transcript:BL96826_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=366bp
MIVSDIRDSPQPESAVLRKRRDSNWTFRRKSSSEVEAPDDLVTALVNLSL EDHVSEGNSPAGSVRRNHDDKGQATPQTMRVTRAVVHSSDEDACAAVSTD EAPPDTLHDIDLSNQLIQVKDTEGVTVLSPAAESAHASPVKKTLASRSYS DPTGTKRPASITSLCVPSGSSADNDDVITRTDKTWDFHFGEPATDTTMTT DGLDNVDLQQDVSMQEITNDEPSTLNVEETEHAESLALSPDSETDTESSP SPSKEENTTTSSGQEYPLSTDSREVTKASAEVDSSETPERSNRTHSTPTH RPRPTSTTAAPATTTTTTTTTATTTTTSTEKSHFKSSIRQGLERMRQPRE ITIVELDGRVVTCFTS Run BLAST on NCBI mRNA from alignment at Sc0000013:242068..245450- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96826_cuf4 ID=transcript:BL96826_cuf4|Name=transcript:BL96826_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3383bp|location=Sequence derived from alignment at Sc0000013:242068..245450- (Branchiostoma lanceolatum) GTCCCCCTTCCCAACACTGGACAGGTCCGCCCTGTCGGCGGAACGTCTGC
CTCGGACCAGCAGTCTCATGAGCACCGCCTCACGGTCTTCAGACACCAAG
GTTTGTACAGTAGGTACTTCAATTTCATACGAAGGCCAACAACGACAACT
TTCATTGTCTGTGCATAGAATTTCGTCACCTGAAATGGTACATGTATAAG
AAAATGTTGCTGTTGTTGGTCTTCGTACCTTTCACTTGAGATTTGAAAAA
ACCCTTGGTCCTGTTTCGAATTAACTAAGATTTTCATACGAAGGCCAACA
ATGACGACATTCATGTCTGTGCACAGAATTTCGTCGCCAGAAATGGTTTA
AGAAATGTTGCTGATGTTAGTCTTCGTACCTTTTACTTCAGTTTCCAAAG
ATCTCTTGGTCCTGTTTTGATTTTCATAAGCATTTTTCTCAAGACAAAAG
CTAGGGATAAGGGTATGTATATATTTACAGTAACGTAAATAGAATATTTG
GGAAATACTTTTTCTTTTCTCTGTTTTTAACTTTTTGGTACCTTTATCAT
AATAGGATGTGCTAGTTATCATTACCGTTGTTTGTACTAGACTACTAATA
TCTTGTCATTAATTACATGTTTTGACACAGCTTCCGAGGCCAAAACGAAA
GTCGAGAAGAAAAAGTTGGAAGTTTTGGAAAAGCAGAAAAGACGACCGCG
AGGAAACTCTGACGACAGAAGACAATACGATTCCGACGTGTAGCCGCACT
CCAACACCGCCCCCTATCAGATCACAGTGGCAGGACATCTCCCTGGAGGC
ACGGTTGCTACCCAGGAAGGACGCGCTGTTCCCGAACGACCAACCGGACG
GACCTGGCTACAGCTGGAGAAGGAAGGGGTCCAAGTCACTTTTTCAACAG
AAGCACCGTAAGTTACGTAAATTATAACCCTTATTGCATTGTATTAGTGA
TTAGGATTCTATATCAAAATATATGCTAGCCCTTATTGTATTGTATTATC
AAGGACATTATATCAATTAGGATGTTAAGTTTTATTTTATACTTCTACGT
TGTAGTATGTTTATAAATTCTTGCCATACTTTGTACCATGTACAATTGTC
GTGCAATAAAGTTCTTCTTCTATCTAAATTTGGTTATGATTTTTGTGAAA
ATACATATAATAAGACCATGGGAAAAGTGCATATCATTTTAAGAAATTTT
AGGATCATTCGTTGCAATATTTTGTAGATCTATGAATATTTATTTTACTA
GGGTCGGCTCCTGTTTGTCTGCCTGCTGTAGAAGTTGCCGGCAAAGCAGG
TGACAAGGGTACGGACGAAGGGTGAGTTACTCTTTACTAAGCTATGGTTA
TAGGTTTGTCAGTTGTGCAGTTCTCATAAGAATCGACAGGATTCAGTGTG
CCATAATGGTTTGACATAAAGTGATACTAGGCATTCGTAAAAAAACGCAC
GGTGTCCCTTTATCCTGTACACGTTTAATTCAGCTTTTTTCTCTGCTAGC
TGTCTAACCTGATTAACAATACATCATAGTATTTGGTGCCAAACGGCTAC
TGTAGCAGACTGAAAGTTTAAAAGACCCAGTAAATTCTTTTCGGCACAAG
GGATTACACGTTCAGTACCAAGGAGAGGATCCATTATATGCACTACAAAG
AAATACTTCTTTTTGAAGGGATACAGCGTAGTTTCCCCCCTTTTTCTCTC
ACTCCTATGATCTTACGTAGTATATTCACTTCCTTGTTTGGGGAAAACCT
TACGATTTATTAATGAAAGAAGAAAACACATAGACAACAAATGTTATTCT
TTAATACCCGATGTACACTGATTGCATGTGAAAAAAATGTGCTTGTCTAC
GTCAAAAACTTGAGACCACAGAAATCACGTGATTTATCTCCCTAGGCTGT
CATTGGCTGACAGACAAATTGAAATGATCGTTAGCGACATCCGGGACAGT
CCCCAGCCGGAGTCTGCGGTACTGCGCAAGCGCCGTGACAGCAACTGGAC
GTTCCGTCGGAAGAGCAGTTCAGAGGTCGAGGCACCCGATGACCTGGTCA
CTGCACTGGTCAACCTGAGTTTGGAGGACCACGTCAGCGAGGGAAACAGT
CCGGCCGGGTCAGTTAGAAGAAATCATGACGATAAGGGACAAGCAACTCC
ACAAACGATGAGAGTCACAAGGTATACTAGTGCCTAAAAAAAGATTCCTA
CATTTCTTTGTTTTCGTTTTTTGAGAATATTCGAAATTTCGAACTCTCTA
AGTAAAATCTTGAGGAACAGCCAAACATTTACCAATTAACATTCTAGAGA
TATCATTCTACAAATAAAAAGAATAGTTTGTGCCTATTCAGTCGTGAGCT
TTCTCCTATTGTATTCTGCCTTGATGCTCAAAATACGTACACAGTGAAAG
CGCAGTAATAATTTTTTCAATATTTTGTTTAAAGATTGACTGCTTTCTAA
CGCAACATGGCCATTCTCTTCAATAGCTACCTTTAAGAACACCATTTGAT
ACTACATGTTCTTTTATCCTTTCCCCTTGTAGGGCCGTTGTCCATTCTTC
GGACGAGGACGCATGCGCAGCCGTCTCAACAGATGAAGCACCACCCGACA
CTCTCCACGACATTGACCTTTCCAATCAGCTGATCCAGGTCAAGGACACG
GAGGGCGTGACGGTGTTGTCTCCCGCCGCCGAGAGTGCGCATGCGTCACC
CGTGAAGAAAACTCTAGCGAGCCGGTCTTACAGCGACCCCACTGGGACTA
AACGTCCCGCCAGTATAACCAGCCTCTGCGTACCGTCCGGGTCATCTGCT
GACAACGACGACGTCATAACAAGGACGGATAAAACATGGGATTTCCACTT
CGGAGAACCTGCTACAGACACAACTATGACAACCGATGGTTTGGACAACG
TAGACCTACAACAAGATGTTTCCATGCAGGAAATTACAAACGACGAACCC
TCAACTCTAAACGTAGAAGAGACAGAACATGCAGAGAGTTTAGCTCTATC
GCCAGATAGCGAAACTGATACCGAAAGTTCTCCTTCGCCATCTAAAGAAG
AGAACACAACTACAAGTAGCGGTCAGGAATATCCTTTATCCACAGACTCA
AGAGAAGTTACTAAAGCTAGTGCAGAAGTGGACTCGTCCGAAACACCAGA
GAGGTCGAACAGAACACATAGTACACCTACACACCGGCCAAGGCCCACTT
CCACTACTGCCGCTCCTGCTACAACTACTACTACTACAACTACTACTGCG
ACTACTACTACTACTTCCACGGAAAAATCACATTTTAAGAGTTCGATAAG
ACAAGGACTGGAACGGATGAGACAGCCCAGAGAGATCACTATTGTTGAAT
TGGACGGGAGAGTGGTGACGTGTTTTACGTCAT Coding sequence (CDS) from alignment at Sc0000013:242068..245450- >transcript:BL96826_cuf4 ID=transcript:BL96826_cuf4|Name=transcript:BL96826_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=2196bp|location=Sequence derived from alignment at Sc0000013:242068..245450- (Branchiostoma lanceolatum) ATGATCGTTAGCGACATCCGGGACAGTCCCCAGCCGGAGTCTGCGGTACT GCGCAAGCGCCGTGACAGCAACTGGACGTTCCGTCGGAAGAGCAGTTCAG AGGTCGAGGCACCCGATGACCTGGTCACTGCACTGGTCAACCTGAGTTTG GAGGACCACGTCAGCGAGGGAAACAGTCCGGCCGGGTCAGTTAGAAGAAA TCATGACGATAAGGGACAAGCAACTCCACAAACGATGAGAGTCACAAGGG CCGTTGTCCATTCTTCGGACGAGGACGCATGCGCAGCCGTCTCAACAGAT GAAGCACCACCCGACACTCTCCACGACATTGACCTTTCCAATCAGCTGAT CCAGGTCAAGGACACGGAGGGCGTGACGGTGTTGTCTCCCGCCGCCGAGA GTGCGCATGCGTCACCCGTGAAGAAAACTCTAGCGAGCCGGTCTTACAGC GACCCCACTGGGACTAAACGTCCCGCCAGTATAACCAGCCTCTGCGTACC GTCCGGGTCATCTGCTGACAACGACGACGTCATAACAAGGACGGATAAAA CATGGGATTTCCACTTCGGAGAACCTGCTACAGACACAACTATGACAACC GATGGTTTGGACAACGTAGACCTACAACAAGATGTTTCCATGCAGGAAAT TACAAACGACGAACCCTCAACTCTAAACGTAGAAGAGACAGAACATGCAG AGAGTTTAGCTCTATCGCCAGATAGCGAAACTGATACCGAAAGTTCTCCT TCGCCATCTAAAGAAGAGAACACAACTACAAGTAGCGGTCAGGAATATCC TTTATCCACAGACTCAAGAGAAGTTACTAAAGCTAGTGCAGAAGTGGACT CGTCCGAAACACCAGAGAGGTCGAACAGAACACATAGTACACCTACACAC CGGCCAAGGCCCACTTCCACTACTGCCGCTCCTGCTACAACTACTACTAC TACAACTACTACTGCGACTACTACTACTACTTCCACGGAAAAATCACATT TTAAGAGTTCGATAAGACAAGGACTGGAACGGATGAGACAGCCCAGAGAG ATCACTATTGTTGAATTGGACGGGAGAGTGGTGACGTGTTTTACGTCAAT GATCGTTAGCGACATCCGGGACAGTCCCCAGCCGGAGTCTGCGGTACTGC GCAAGCGCCGTGACAGCAACTGGACGTTCCGTCGGAAGAGCAGTTCAGAG GTCGAGGCACCCGATGACCTGGTCACTGCACTGGTCAACCTGAGTTTGGA GGACCACGTCAGCGAGGGAAACAGTCCGGCCGGGTCAGTTAGAAGAAATC ATGACGATAAGGGACAAGCAACTCCACAAACGATGAGAGTCACAAGGGCC GTTGTCCATTCTTCGGACGAGGACGCATGCGCAGCCGTCTCAACAGATGA AGCACCACCCGACACTCTCCACGACATTGACCTTTCCAATCAGCTGATCC AGGTCAAGGACACGGAGGGCGTGACGGTGTTGTCTCCCGCCGCCGAGAGT GCGCATGCGTCACCCGTGAAGAAAACTCTAGCGAGCCGGTCTTACAGCGA CCCCACTGGGACTAAACGTCCCGCCAGTATAACCAGCCTCTGCGTACCGT CCGGGTCATCTGCTGACAACGACGACGTCATAACAAGGACGGATAAAACA TGGGATTTCCACTTCGGAGAACCTGCTACAGACACAACTATGACAACCGA TGGTTTGGACAACGTAGACCTACAACAAGATGTTTCCATGCAGGAAATTA CAAACGACGAACCCTCAACTCTAAACGTAGAAGAGACAGAACATGCAGAG AGTTTAGCTCTATCGCCAGATAGCGAAACTGATACCGAAAGTTCTCCTTC GCCATCTAAAGAAGAGAACACAACTACAAGTAGCGGTCAGGAATATCCTT TATCCACAGACTCAAGAGAAGTTACTAAAGCTAGTGCAGAAGTGGACTCG TCCGAAACACCAGAGAGGTCGAACAGAACACATAGTACACCTACACACCG GCCAAGGCCCACTTCCACTACTGCCGCTCCTGCTACAACTACTACTACTA CAACTACTACTGCGACTACTACTACTACTTCCACGGAAAAATCACATTTT AAGAGTTCGATAAGACAAGGACTGGAACGGATGAGACAGCCCAGAGAGAT CACTATTGTTGAATTGGACGGGAGAGTGGTGACGTGTTTTACGTCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000013 | genome | Sc0000013:242068..245450 - |
Properties
Property Name | Value |
Transcript id | BL96826_cuf4 |
Biotype | protein_coding |
|