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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96826_cuf4 >transcript:BL96826_cuf4-protein ID=transcript:BL96826_cuf4-protein|Name=transcript:BL96826_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=366bp
MIVSDIRDSPQPESAVLRKRRDSNWTFRRKSSSEVEAPDDLVTALVNLSL
EDHVSEGNSPAGSVRRNHDDKGQATPQTMRVTRAVVHSSDEDACAAVSTD
EAPPDTLHDIDLSNQLIQVKDTEGVTVLSPAAESAHASPVKKTLASRSYS
DPTGTKRPASITSLCVPSGSSADNDDVITRTDKTWDFHFGEPATDTTMTT
DGLDNVDLQQDVSMQEITNDEPSTLNVEETEHAESLALSPDSETDTESSP
SPSKEENTTTSSGQEYPLSTDSREVTKASAEVDSSETPERSNRTHSTPTH
RPRPTSTTAAPATTTTTTTTTATTTTTSTEKSHFKSSIRQGLERMRQPRE
ITIVELDGRVVTCFTS Run BLAST on NCBI mRNA from alignment at Sc0000013:242068..245450- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96826_cuf4 ID=transcript:BL96826_cuf4|Name=transcript:BL96826_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3383bp|location=Sequence derived from alignment at Sc0000013:242068..245450- (Branchiostoma lanceolatum)
GTCCCCCTTCCCAACACTGGACAGGTCCGCCCTGTCGGCGGAACGTCTGC
CTCGGACCAGCAGTCTCATGAGCACCGCCTCACGGTCTTCAGACACCAAG
GTTTGTACAGTAGGTACTTCAATTTCATACGAAGGCCAACAACGACAACT
TTCATTGTCTGTGCATAGAATTTCGTCACCTGAAATGGTACATGTATAAG
AAAATGTTGCTGTTGTTGGTCTTCGTACCTTTCACTTGAGATTTGAAAAA
ACCCTTGGTCCTGTTTCGAATTAACTAAGATTTTCATACGAAGGCCAACA
ATGACGACATTCATGTCTGTGCACAGAATTTCGTCGCCAGAAATGGTTTA
AGAAATGTTGCTGATGTTAGTCTTCGTACCTTTTACTTCAGTTTCCAAAG
ATCTCTTGGTCCTGTTTTGATTTTCATAAGCATTTTTCTCAAGACAAAAG
CTAGGGATAAGGGTATGTATATATTTACAGTAACGTAAATAGAATATTTG
GGAAATACTTTTTCTTTTCTCTGTTTTTAACTTTTTGGTACCTTTATCAT
AATAGGATGTGCTAGTTATCATTACCGTTGTTTGTACTAGACTACTAATA
TCTTGTCATTAATTACATGTTTTGACACAGCTTCCGAGGCCAAAACGAAA
GTCGAGAAGAAAAAGTTGGAAGTTTTGGAAAAGCAGAAAAGACGACCGCG
AGGAAACTCTGACGACAGAAGACAATACGATTCCGACGTGTAGCCGCACT
CCAACACCGCCCCCTATCAGATCACAGTGGCAGGACATCTCCCTGGAGGC
ACGGTTGCTACCCAGGAAGGACGCGCTGTTCCCGAACGACCAACCGGACG
GACCTGGCTACAGCTGGAGAAGGAAGGGGTCCAAGTCACTTTTTCAACAG
AAGCACCGTAAGTTACGTAAATTATAACCCTTATTGCATTGTATTAGTGA
TTAGGATTCTATATCAAAATATATGCTAGCCCTTATTGTATTGTATTATC
AAGGACATTATATCAATTAGGATGTTAAGTTTTATTTTATACTTCTACGT
TGTAGTATGTTTATAAATTCTTGCCATACTTTGTACCATGTACAATTGTC
GTGCAATAAAGTTCTTCTTCTATCTAAATTTGGTTATGATTTTTGTGAAA
ATACATATAATAAGACCATGGGAAAAGTGCATATCATTTTAAGAAATTTT
AGGATCATTCGTTGCAATATTTTGTAGATCTATGAATATTTATTTTACTA
GGGTCGGCTCCTGTTTGTCTGCCTGCTGTAGAAGTTGCCGGCAAAGCAGG
TGACAAGGGTACGGACGAAGGGTGAGTTACTCTTTACTAAGCTATGGTTA
TAGGTTTGTCAGTTGTGCAGTTCTCATAAGAATCGACAGGATTCAGTGTG
CCATAATGGTTTGACATAAAGTGATACTAGGCATTCGTAAAAAAACGCAC
GGTGTCCCTTTATCCTGTACACGTTTAATTCAGCTTTTTTCTCTGCTAGC
TGTCTAACCTGATTAACAATACATCATAGTATTTGGTGCCAAACGGCTAC
TGTAGCAGACTGAAAGTTTAAAAGACCCAGTAAATTCTTTTCGGCACAAG
GGATTACACGTTCAGTACCAAGGAGAGGATCCATTATATGCACTACAAAG
AAATACTTCTTTTTGAAGGGATACAGCGTAGTTTCCCCCCTTTTTCTCTC
ACTCCTATGATCTTACGTAGTATATTCACTTCCTTGTTTGGGGAAAACCT
TACGATTTATTAATGAAAGAAGAAAACACATAGACAACAAATGTTATTCT
TTAATACCCGATGTACACTGATTGCATGTGAAAAAAATGTGCTTGTCTAC
GTCAAAAACTTGAGACCACAGAAATCACGTGATTTATCTCCCTAGGCTGT
CATTGGCTGACAGACAAATTGAAATGATCGTTAGCGACATCCGGGACAGT
CCCCAGCCGGAGTCTGCGGTACTGCGCAAGCGCCGTGACAGCAACTGGAC
GTTCCGTCGGAAGAGCAGTTCAGAGGTCGAGGCACCCGATGACCTGGTCA
CTGCACTGGTCAACCTGAGTTTGGAGGACCACGTCAGCGAGGGAAACAGT
CCGGCCGGGTCAGTTAGAAGAAATCATGACGATAAGGGACAAGCAACTCC
ACAAACGATGAGAGTCACAAGGTATACTAGTGCCTAAAAAAAGATTCCTA
CATTTCTTTGTTTTCGTTTTTTGAGAATATTCGAAATTTCGAACTCTCTA
AGTAAAATCTTGAGGAACAGCCAAACATTTACCAATTAACATTCTAGAGA
TATCATTCTACAAATAAAAAGAATAGTTTGTGCCTATTCAGTCGTGAGCT
TTCTCCTATTGTATTCTGCCTTGATGCTCAAAATACGTACACAGTGAAAG
CGCAGTAATAATTTTTTCAATATTTTGTTTAAAGATTGACTGCTTTCTAA
CGCAACATGGCCATTCTCTTCAATAGCTACCTTTAAGAACACCATTTGAT
ACTACATGTTCTTTTATCCTTTCCCCTTGTAGGGCCGTTGTCCATTCTTC
GGACGAGGACGCATGCGCAGCCGTCTCAACAGATGAAGCACCACCCGACA
CTCTCCACGACATTGACCTTTCCAATCAGCTGATCCAGGTCAAGGACACG
GAGGGCGTGACGGTGTTGTCTCCCGCCGCCGAGAGTGCGCATGCGTCACC
CGTGAAGAAAACTCTAGCGAGCCGGTCTTACAGCGACCCCACTGGGACTA
AACGTCCCGCCAGTATAACCAGCCTCTGCGTACCGTCCGGGTCATCTGCT
GACAACGACGACGTCATAACAAGGACGGATAAAACATGGGATTTCCACTT
CGGAGAACCTGCTACAGACACAACTATGACAACCGATGGTTTGGACAACG
TAGACCTACAACAAGATGTTTCCATGCAGGAAATTACAAACGACGAACCC
TCAACTCTAAACGTAGAAGAGACAGAACATGCAGAGAGTTTAGCTCTATC
GCCAGATAGCGAAACTGATACCGAAAGTTCTCCTTCGCCATCTAAAGAAG
AGAACACAACTACAAGTAGCGGTCAGGAATATCCTTTATCCACAGACTCA
AGAGAAGTTACTAAAGCTAGTGCAGAAGTGGACTCGTCCGAAACACCAGA
GAGGTCGAACAGAACACATAGTACACCTACACACCGGCCAAGGCCCACTT
CCACTACTGCCGCTCCTGCTACAACTACTACTACTACAACTACTACTGCG
ACTACTACTACTACTTCCACGGAAAAATCACATTTTAAGAGTTCGATAAG
ACAAGGACTGGAACGGATGAGACAGCCCAGAGAGATCACTATTGTTGAAT
TGGACGGGAGAGTGGTGACGTGTTTTACGTCAT Coding sequence (CDS) from alignment at Sc0000013:242068..245450- >transcript:BL96826_cuf4 ID=transcript:BL96826_cuf4|Name=transcript:BL96826_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=2196bp|location=Sequence derived from alignment at Sc0000013:242068..245450- (Branchiostoma lanceolatum)
ATGATCGTTAGCGACATCCGGGACAGTCCCCAGCCGGAGTCTGCGGTACT
GCGCAAGCGCCGTGACAGCAACTGGACGTTCCGTCGGAAGAGCAGTTCAG
AGGTCGAGGCACCCGATGACCTGGTCACTGCACTGGTCAACCTGAGTTTG
GAGGACCACGTCAGCGAGGGAAACAGTCCGGCCGGGTCAGTTAGAAGAAA
TCATGACGATAAGGGACAAGCAACTCCACAAACGATGAGAGTCACAAGGG
CCGTTGTCCATTCTTCGGACGAGGACGCATGCGCAGCCGTCTCAACAGAT
GAAGCACCACCCGACACTCTCCACGACATTGACCTTTCCAATCAGCTGAT
CCAGGTCAAGGACACGGAGGGCGTGACGGTGTTGTCTCCCGCCGCCGAGA
GTGCGCATGCGTCACCCGTGAAGAAAACTCTAGCGAGCCGGTCTTACAGC
GACCCCACTGGGACTAAACGTCCCGCCAGTATAACCAGCCTCTGCGTACC
GTCCGGGTCATCTGCTGACAACGACGACGTCATAACAAGGACGGATAAAA
CATGGGATTTCCACTTCGGAGAACCTGCTACAGACACAACTATGACAACC
GATGGTTTGGACAACGTAGACCTACAACAAGATGTTTCCATGCAGGAAAT
TACAAACGACGAACCCTCAACTCTAAACGTAGAAGAGACAGAACATGCAG
AGAGTTTAGCTCTATCGCCAGATAGCGAAACTGATACCGAAAGTTCTCCT
TCGCCATCTAAAGAAGAGAACACAACTACAAGTAGCGGTCAGGAATATCC
TTTATCCACAGACTCAAGAGAAGTTACTAAAGCTAGTGCAGAAGTGGACT
CGTCCGAAACACCAGAGAGGTCGAACAGAACACATAGTACACCTACACAC
CGGCCAAGGCCCACTTCCACTACTGCCGCTCCTGCTACAACTACTACTAC
TACAACTACTACTGCGACTACTACTACTACTTCCACGGAAAAATCACATT
TTAAGAGTTCGATAAGACAAGGACTGGAACGGATGAGACAGCCCAGAGAG
ATCACTATTGTTGAATTGGACGGGAGAGTGGTGACGTGTTTTACGTCAAT
GATCGTTAGCGACATCCGGGACAGTCCCCAGCCGGAGTCTGCGGTACTGC
GCAAGCGCCGTGACAGCAACTGGACGTTCCGTCGGAAGAGCAGTTCAGAG
GTCGAGGCACCCGATGACCTGGTCACTGCACTGGTCAACCTGAGTTTGGA
GGACCACGTCAGCGAGGGAAACAGTCCGGCCGGGTCAGTTAGAAGAAATC
ATGACGATAAGGGACAAGCAACTCCACAAACGATGAGAGTCACAAGGGCC
GTTGTCCATTCTTCGGACGAGGACGCATGCGCAGCCGTCTCAACAGATGA
AGCACCACCCGACACTCTCCACGACATTGACCTTTCCAATCAGCTGATCC
AGGTCAAGGACACGGAGGGCGTGACGGTGTTGTCTCCCGCCGCCGAGAGT
GCGCATGCGTCACCCGTGAAGAAAACTCTAGCGAGCCGGTCTTACAGCGA
CCCCACTGGGACTAAACGTCCCGCCAGTATAACCAGCCTCTGCGTACCGT
CCGGGTCATCTGCTGACAACGACGACGTCATAACAAGGACGGATAAAACA
TGGGATTTCCACTTCGGAGAACCTGCTACAGACACAACTATGACAACCGA
TGGTTTGGACAACGTAGACCTACAACAAGATGTTTCCATGCAGGAAATTA
CAAACGACGAACCCTCAACTCTAAACGTAGAAGAGACAGAACATGCAGAG
AGTTTAGCTCTATCGCCAGATAGCGAAACTGATACCGAAAGTTCTCCTTC
GCCATCTAAAGAAGAGAACACAACTACAAGTAGCGGTCAGGAATATCCTT
TATCCACAGACTCAAGAGAAGTTACTAAAGCTAGTGCAGAAGTGGACTCG
TCCGAAACACCAGAGAGGTCGAACAGAACACATAGTACACCTACACACCG
GCCAAGGCCCACTTCCACTACTGCCGCTCCTGCTACAACTACTACTACTA
CAACTACTACTGCGACTACTACTACTACTTCCACGGAAAAATCACATTTT
AAGAGTTCGATAAGACAAGGACTGGAACGGATGAGACAGCCCAGAGAGAT
CACTATTGTTGAATTGGACGGGAGAGTGGTGACGTGTTTTACGTCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000013 | genome | Sc0000013:242068..245450 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96826_cuf4 |
| Biotype | protein_coding |
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