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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96788_cuf1 >transcript:BL96788_cuf1-protein ID=transcript:BL96788_cuf1-protein|Name=transcript:BL96788_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=226bp
PDDGGLAIGRDNKTCAEPGQFLLYAKANEGQIMMLTTDLGMAAKPVLLDQ GVRPVAVAYDPVEKRVYWSDVATYSINRVFLNGTGSEVFLDSTNGIASVE GLAVDWHNRRLYFSNLGLHYTGVSWGRVEMVGLDRTGHRRLLEGHVQKPR SIVLDTEGRHVYITDWGEEPKILRTDLDGRNPQNIVSSDMENPNGLAISD GKLYWVDSHVKSGENSTGTLEQADLD Run BLAST on NCBI mRNA from alignment at Sc0000089:671539..673213- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96788_cuf1 ID=transcript:BL96788_cuf1|Name=transcript:BL96788_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=1675bp|location=Sequence derived from alignment at Sc0000089:671539..673213- (Branchiostoma lanceolatum) CCAGATGATGGGGGACTGGCCATTGGGAGGGACAACAAAACATGTGCAGG
TAAATACTATCATCCATACTGAATTGTCATTAAAAACTACTAGTATTGTA
ATAGTGTACCCTGACAATTTCACTTAATCATGTTTGAAGCAGCATTGGGC
TGTTTTCAGACGATAACAACCACATTGTAACAGTCCTTTTGTGCTTTTCC
TCCTATCATGATTGTCTGTTTCCCACCCACAGAGCCAGGCCAGTTCCTGT
TGTATGCTAAAGCGAATGAAGGACAGATCATGATGTTGACCACAGACCTG
GGCATGGCGGCCAAACCTGTCCTGTTGGACCAGGGTGTGCGACCGGTGGC
TGTGGCTTATGATCCTGTTGAAAAGGTCTCTTCTAACTCATTGACTTAAG
ACTCTAGAGTTAGAGGGATGTGCATTTTCATCATAGAAATCCATGCTTAA
AAGCTAGTAGAATGTCATACTATGTTTCTGAAAACAGTTTCTATTACTGA
CAGTAAGATTTATACATGTACTTGCATTGCTAGAATACCACTTCCCATTG
GTAAAAGTCCCTAGATTGAACGAACATTTCTTTGATGGGTATGCATGTAT
GCATGTTTTTTTTTAAATGTTTATATTTATATTTGTAAATACATGTGTCC
ACCCAGAGAGTGTACTGGAGTGATGTGGCCACTTACAGCATCAACAGGGT
GTTCCTGAACGGAACAGGCTCGGAGGTGTTCTTGGACAGTACCAATGGGA
TTGCATCAGTAGAAGGTACGGGAAGTTCTTCAAATGTTTTTTTCTAGATT
TTCTGCATTCAAAATATCAACCAAACAGTATCTACTTTGGCTGATGATAT
CAAAGTATGACAATTTATAGCAACTGGAGTGGAAGTAGGAAAACACTCAC
CACGATGCCTGACACTTTCTTTTTCATCTTCAGGTCTTGCAGTTGACTGG
CACAATCGGCGGCTGTACTTCTCCAACCTGGGCCTGCACTACACAGGAGT
GAGCTGGGGGAGGGTGGAGATGGTCGGGCTGGACAGGACGGGACACCGAC
GGCTGCTGGAAGGACATGTACAAAAGCCGAGGTCCATAGTCCTGGACACG
GAGGGCAGGTATGTTCATGATTATCATAGTTTTAAACATGATCCTTTTTT
TATTATCTAACTGATTGTGAAACTCAGTTTTACAAATGGATGTTTTATTG
CAAATATTCTGTTTTAGTATTGCATTGTTTGTACTTGTGAAGAAATAAAC
CATTCCCAAAGTCTAAAAGTCTATTAAAAAAGATGACAGGAACAGGCCCT
GGAGTGTAAGGAAAGTGGAAAAAATTGAGAATAGAAAAAAATGATGGTAG
CATACCAACAGATTGAATTGAATTGGTAAACTGCATGGGATATTGAAGTG
AAAGATCTACCAGTTTTGATTTTTTGCAAGAAGACACTTGTAATTTATGC
TGATATTGTCTTCCTTTTTTCAGACATGTGTACATCACAGATTGGGGTGA
GGAGCCCAAGATCCTGAGGACTGACCTGGACGGCAGAAATCCCCAGAACA
TTGTGTCATCAGACATGGAGAACCCCAATGGCCTGGCCATCAGTGATGGG
AAACTGTACTGGGTCGACTCACACGTGAAGAGTGGGGAGAACAGCACAGG
GACCCTGGAACAAGCTGACCTGGAC Coding sequence (CDS) from alignment at Sc0000089:671539..673213- >transcript:BL96788_cuf1 ID=transcript:BL96788_cuf1|Name=transcript:BL96788_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3390bp|location=Sequence derived from alignment at Sc0000089:671539..673213- (Branchiostoma lanceolatum) CCAGATGATGGGGGACTGGCCATTGGGAGGGACAACAAAACATGTGCAGA GCCAGGCCAGTTCCTGTTGTATGCTAAAGCGAATGAAGGACAGATCATGA TGTTGACCACAGACCTGGGCATGGCGGCCAAACCTGTCCTGTTGGACCAG GGTGTGCGACCGGTGGCTGTGGCTTATGATCCTGTTGAAAAGAGAGTGTA CTGGAGTGATGTGGCCACTTACAGCATCAACAGGGTGTTCCTGAACGGAA CAGGCTCGGAGGTGTTCTTGGACAGTACCAATGGGATTGCATCAGTAGAA GGTCTTGCAGTTGACTGGCACAATCGGCGGCTGTACTTCTCCAACCTGGG CCTGCACTACACAGGAGTGAGCTGGGGGAGGGTGGAGATGGTCGGGCTGG ACAGGACGGGACACCGACGGCTGCTGGAAGGACATGTACAAAAGCCGAGG TCCATAGTCCTGGACACGGAGGGCAGACATGTGTACATCACAGATTGGGG TGAGGAGCCCAAGATCCTGAGGACTGACCTGGACGGCAGAAATCCCCAGA ACATTGTGTCATCAGACATGGAGAACCCCAATGGCCTGGCCATCAGTGAT GGGAAACTGTACTGGGTCGACTCACACGTGAAGAGTGGGGAGAACAGCAC AGGGACCCTGGAACAAGCTGACCTGGACCCAGATGATGGGGGACTGGCCA TTGGGAGGGACAACAAAACATGTGCAGAGCCAGGCCAGTTCCTGTTGTAT GCTAAAGCGAATGAAGGACAGATCATGATGTTGACCACAGACCTGGGCAT GGCGGCCAAACCTGTCCTGTTGGACCAGGGTGTGCGACCGGTGGCTGTGG CTTATGATCCTGTTGAAAAGAGAGTGTACTGGAGTGATGTGGCCACTTAC AGCATCAACAGGGTGTTCCTGAACGGAACAGGCTCGGAGGTGTTCTTGGA CAGTACCAATGGGATTGCATCAGTAGAAGGTCTTGCAGTTGACTGGCACA ATCGGCGGCTGTACTTCTCCAACCTGGGCCTGCACTACACAGGAGTGAGC TGGGGGAGGGTGGAGATGGTCGGGCTGGACAGGACGGGACACCGACGGCT GCTGGAAGGACATGTACAAAAGCCGAGGTCCATAGTCCTGGACACGGAGG GCAGACATGTGTACATCACAGATTGGGGTGAGGAGCCCAAGATCCTGAGG ACTGACCTGGACGGCAGAAATCCCCAGAACATTGTGTCATCAGACATGGA GAACCCCAATGGCCTGGCCATCAGTGATGGGAAACTGTACTGGGTCGACT CACACGTGAAGAGTGGGGAGAACAGCACAGGGACCCTGGAACAAGCTGAC CTGGACCCAGATGATGGGGGACTGGCCATTGGGAGGGACAACAAAACATG TGCAGAGCCAGGCCAGTTCCTGTTGTATGCTAAAGCGAATGAAGGACAGA TCATGATGTTGACCACAGACCTGGGCATGGCGGCCAAACCTGTCCTGTTG GACCAGGGTGTGCGACCGGTGGCTGTGGCTTATGATCCTGTTGAAAAGAG AGTGTACTGGAGTGATGTGGCCACTTACAGCATCAACAGGGTGTTCCTGA ACGGAACAGGCTCGGAGGTGTTCTTGGACAGTACCAATGGGATTGCATCA GTAGAAGGTCTTGCAGTTGACTGGCACAATCGGCGGCTGTACTTCTCCAA CCTGGGCCTGCACTACACAGGAGTGAGCTGGGGGAGGGTGGAGATGGTCG GGCTGGACAGGACGGGACACCGACGGCTGCTGGAAGGACATGTACAAAAG CCGAGGTCCATAGTCCTGGACACGGAGGGCAGACATGTGTACATCACAGA TTGGGGTGAGGAGCCCAAGATCCTGAGGACTGACCTGGACGGCAGAAATC CCCAGAACATTGTGTCATCAGACATGGAGAACCCCAATGGCCTGGCCATC AGTGATGGGAAACTGTACTGGGTCGACTCACACGTGAAGAGTGGGGAGAA CAGCACAGGGACCCTGGAACAAGCTGACCTGGACCCAGATGATGGGGGAC TGGCCATTGGGAGGGACAACAAAACATGTGCAGAGCCAGGCCAGTTCCTG TTGTATGCTAAAGCGAATGAAGGACAGATCATGATGTTGACCACAGACCT GGGCATGGCGGCCAAACCTGTCCTGTTGGACCAGGGTGTGCGACCGGTGG CTGTGGCTTATGATCCTGTTGAAAAGAGAGTGTACTGGAGTGATGTGGCC ACTTACAGCATCAACAGGGTGTTCCTGAACGGAACAGGCTCGGAGGTGTT CTTGGACAGTACCAATGGGATTGCATCAGTAGAAGGTCTTGCAGTTGACT GGCACAATCGGCGGCTGTACTTCTCCAACCTGGGCCTGCACTACACAGGA GTGAGCTGGGGGAGGGTGGAGATGGTCGGGCTGGACAGGACGGGACACCG ACGGCTGCTGGAAGGACATGTACAAAAGCCGAGGTCCATAGTCCTGGACA CGGAGGGCAGACATGTGTACATCACAGATTGGGGTGAGGAGCCCAAGATC CTGAGGACTGACCTGGACGGCAGAAATCCCCAGAACATTGTGTCATCAGA CATGGAGAACCCCAATGGCCTGGCCATCAGTGATGGGAAACTGTACTGGG TCGACTCACACGTGAAGAGTGGGGAGAACAGCACAGGGACCCTGGAACAA GCTGACCTGGACCCAGATGATGGGGGACTGGCCATTGGGAGGGACAACAA AACATGTGCAGAGCCAGGCCAGTTCCTGTTGTATGCTAAAGCGAATGAAG GACAGATCATGATGTTGACCACAGACCTGGGCATGGCGGCCAAACCTGTC CTGTTGGACCAGGGTGTGCGACCGGTGGCTGTGGCTTATGATCCTGTTGA AAAGAGAGTGTACTGGAGTGATGTGGCCACTTACAGCATCAACAGGGTGT TCCTGAACGGAACAGGCTCGGAGGTGTTCTTGGACAGTACCAATGGGATT GCATCAGTAGAAGGTCTTGCAGTTGACTGGCACAATCGGCGGCTGTACTT CTCCAACCTGGGCCTGCACTACACAGGAGTGAGCTGGGGGAGGGTGGAGA TGGTCGGGCTGGACAGGACGGGACACCGACGGCTGCTGGAAGGACATGTA CAAAAGCCGAGGTCCATAGTCCTGGACACGGAGGGCAGACATGTGTACAT CACAGATTGGGGTGAGGAGCCCAAGATCCTGAGGACTGACCTGGACGGCA GAAATCCCCAGAACATTGTGTCATCAGACATGGAGAACCCCAATGGCCTG GCCATCAGTGATGGGAAACTGTACTGGGTCGACTCACACGTGAAGAGTGG GGAGAACAGCACAGGGACCCTGGAACAAGCTGACCTGGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000089 | genome | Sc0000089:671539..673213 - |
Properties
Property Name | Value |
Transcript id | BL96788_cuf1 |
Biotype | protein_coding |
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