transcript:BL96788_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96788_cuf1
Unique Nametranscript:BL96788_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96788_cuf1

>transcript:BL96788_cuf1-protein ID=transcript:BL96788_cuf1-protein|Name=transcript:BL96788_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=226bp
PDDGGLAIGRDNKTCAEPGQFLLYAKANEGQIMMLTTDLGMAAKPVLLDQ
GVRPVAVAYDPVEKRVYWSDVATYSINRVFLNGTGSEVFLDSTNGIASVE
GLAVDWHNRRLYFSNLGLHYTGVSWGRVEMVGLDRTGHRRLLEGHVQKPR
SIVLDTEGRHVYITDWGEEPKILRTDLDGRNPQNIVSSDMENPNGLAISD
GKLYWVDSHVKSGENSTGTLEQADLD
Run BLAST on NCBI

mRNA from alignment at Sc0000089:671539..673213-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96788_cuf1 ID=transcript:BL96788_cuf1|Name=transcript:BL96788_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=1675bp|location=Sequence derived from alignment at Sc0000089:671539..673213- (Branchiostoma lanceolatum)
CCAGATGATGGGGGACTGGCCATTGGGAGGGACAACAAAACATGTGCAGG
TAAATACTATCATCCATACTGAATTGTCATTAAAAACTACTAGTATTGTA
ATAGTGTACCCTGACAATTTCACTTAATCATGTTTGAAGCAGCATTGGGC
TGTTTTCAGACGATAACAACCACATTGTAACAGTCCTTTTGTGCTTTTCC
TCCTATCATGATTGTCTGTTTCCCACCCACAGAGCCAGGCCAGTTCCTGT
TGTATGCTAAAGCGAATGAAGGACAGATCATGATGTTGACCACAGACCTG
GGCATGGCGGCCAAACCTGTCCTGTTGGACCAGGGTGTGCGACCGGTGGC
TGTGGCTTATGATCCTGTTGAAAAGGTCTCTTCTAACTCATTGACTTAAG
ACTCTAGAGTTAGAGGGATGTGCATTTTCATCATAGAAATCCATGCTTAA
AAGCTAGTAGAATGTCATACTATGTTTCTGAAAACAGTTTCTATTACTGA
CAGTAAGATTTATACATGTACTTGCATTGCTAGAATACCACTTCCCATTG
GTAAAAGTCCCTAGATTGAACGAACATTTCTTTGATGGGTATGCATGTAT
GCATGTTTTTTTTTAAATGTTTATATTTATATTTGTAAATACATGTGTCC
ACCCAGAGAGTGTACTGGAGTGATGTGGCCACTTACAGCATCAACAGGGT
GTTCCTGAACGGAACAGGCTCGGAGGTGTTCTTGGACAGTACCAATGGGA
TTGCATCAGTAGAAGGTACGGGAAGTTCTTCAAATGTTTTTTTCTAGATT
TTCTGCATTCAAAATATCAACCAAACAGTATCTACTTTGGCTGATGATAT
CAAAGTATGACAATTTATAGCAACTGGAGTGGAAGTAGGAAAACACTCAC
CACGATGCCTGACACTTTCTTTTTCATCTTCAGGTCTTGCAGTTGACTGG
CACAATCGGCGGCTGTACTTCTCCAACCTGGGCCTGCACTACACAGGAGT
GAGCTGGGGGAGGGTGGAGATGGTCGGGCTGGACAGGACGGGACACCGAC
GGCTGCTGGAAGGACATGTACAAAAGCCGAGGTCCATAGTCCTGGACACG
GAGGGCAGGTATGTTCATGATTATCATAGTTTTAAACATGATCCTTTTTT
TATTATCTAACTGATTGTGAAACTCAGTTTTACAAATGGATGTTTTATTG
CAAATATTCTGTTTTAGTATTGCATTGTTTGTACTTGTGAAGAAATAAAC
CATTCCCAAAGTCTAAAAGTCTATTAAAAAAGATGACAGGAACAGGCCCT
GGAGTGTAAGGAAAGTGGAAAAAATTGAGAATAGAAAAAAATGATGGTAG
CATACCAACAGATTGAATTGAATTGGTAAACTGCATGGGATATTGAAGTG
AAAGATCTACCAGTTTTGATTTTTTGCAAGAAGACACTTGTAATTTATGC
TGATATTGTCTTCCTTTTTTCAGACATGTGTACATCACAGATTGGGGTGA
GGAGCCCAAGATCCTGAGGACTGACCTGGACGGCAGAAATCCCCAGAACA
TTGTGTCATCAGACATGGAGAACCCCAATGGCCTGGCCATCAGTGATGGG
AAACTGTACTGGGTCGACTCACACGTGAAGAGTGGGGAGAACAGCACAGG
GACCCTGGAACAAGCTGACCTGGAC

Coding sequence (CDS) from alignment at Sc0000089:671539..673213-

>transcript:BL96788_cuf1 ID=transcript:BL96788_cuf1|Name=transcript:BL96788_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3390bp|location=Sequence derived from alignment at Sc0000089:671539..673213- (Branchiostoma lanceolatum)
CCAGATGATGGGGGACTGGCCATTGGGAGGGACAACAAAACATGTGCAGA
GCCAGGCCAGTTCCTGTTGTATGCTAAAGCGAATGAAGGACAGATCATGA
TGTTGACCACAGACCTGGGCATGGCGGCCAAACCTGTCCTGTTGGACCAG
GGTGTGCGACCGGTGGCTGTGGCTTATGATCCTGTTGAAAAGAGAGTGTA
CTGGAGTGATGTGGCCACTTACAGCATCAACAGGGTGTTCCTGAACGGAA
CAGGCTCGGAGGTGTTCTTGGACAGTACCAATGGGATTGCATCAGTAGAA
GGTCTTGCAGTTGACTGGCACAATCGGCGGCTGTACTTCTCCAACCTGGG
CCTGCACTACACAGGAGTGAGCTGGGGGAGGGTGGAGATGGTCGGGCTGG
ACAGGACGGGACACCGACGGCTGCTGGAAGGACATGTACAAAAGCCGAGG
TCCATAGTCCTGGACACGGAGGGCAGACATGTGTACATCACAGATTGGGG
TGAGGAGCCCAAGATCCTGAGGACTGACCTGGACGGCAGAAATCCCCAGA
ACATTGTGTCATCAGACATGGAGAACCCCAATGGCCTGGCCATCAGTGAT
GGGAAACTGTACTGGGTCGACTCACACGTGAAGAGTGGGGAGAACAGCAC
AGGGACCCTGGAACAAGCTGACCTGGACCCAGATGATGGGGGACTGGCCA
TTGGGAGGGACAACAAAACATGTGCAGAGCCAGGCCAGTTCCTGTTGTAT
GCTAAAGCGAATGAAGGACAGATCATGATGTTGACCACAGACCTGGGCAT
GGCGGCCAAACCTGTCCTGTTGGACCAGGGTGTGCGACCGGTGGCTGTGG
CTTATGATCCTGTTGAAAAGAGAGTGTACTGGAGTGATGTGGCCACTTAC
AGCATCAACAGGGTGTTCCTGAACGGAACAGGCTCGGAGGTGTTCTTGGA
CAGTACCAATGGGATTGCATCAGTAGAAGGTCTTGCAGTTGACTGGCACA
ATCGGCGGCTGTACTTCTCCAACCTGGGCCTGCACTACACAGGAGTGAGC
TGGGGGAGGGTGGAGATGGTCGGGCTGGACAGGACGGGACACCGACGGCT
GCTGGAAGGACATGTACAAAAGCCGAGGTCCATAGTCCTGGACACGGAGG
GCAGACATGTGTACATCACAGATTGGGGTGAGGAGCCCAAGATCCTGAGG
ACTGACCTGGACGGCAGAAATCCCCAGAACATTGTGTCATCAGACATGGA
GAACCCCAATGGCCTGGCCATCAGTGATGGGAAACTGTACTGGGTCGACT
CACACGTGAAGAGTGGGGAGAACAGCACAGGGACCCTGGAACAAGCTGAC
CTGGACCCAGATGATGGGGGACTGGCCATTGGGAGGGACAACAAAACATG
TGCAGAGCCAGGCCAGTTCCTGTTGTATGCTAAAGCGAATGAAGGACAGA
TCATGATGTTGACCACAGACCTGGGCATGGCGGCCAAACCTGTCCTGTTG
GACCAGGGTGTGCGACCGGTGGCTGTGGCTTATGATCCTGTTGAAAAGAG
AGTGTACTGGAGTGATGTGGCCACTTACAGCATCAACAGGGTGTTCCTGA
ACGGAACAGGCTCGGAGGTGTTCTTGGACAGTACCAATGGGATTGCATCA
GTAGAAGGTCTTGCAGTTGACTGGCACAATCGGCGGCTGTACTTCTCCAA
CCTGGGCCTGCACTACACAGGAGTGAGCTGGGGGAGGGTGGAGATGGTCG
GGCTGGACAGGACGGGACACCGACGGCTGCTGGAAGGACATGTACAAAAG
CCGAGGTCCATAGTCCTGGACACGGAGGGCAGACATGTGTACATCACAGA
TTGGGGTGAGGAGCCCAAGATCCTGAGGACTGACCTGGACGGCAGAAATC
CCCAGAACATTGTGTCATCAGACATGGAGAACCCCAATGGCCTGGCCATC
AGTGATGGGAAACTGTACTGGGTCGACTCACACGTGAAGAGTGGGGAGAA
CAGCACAGGGACCCTGGAACAAGCTGACCTGGACCCAGATGATGGGGGAC
TGGCCATTGGGAGGGACAACAAAACATGTGCAGAGCCAGGCCAGTTCCTG
TTGTATGCTAAAGCGAATGAAGGACAGATCATGATGTTGACCACAGACCT
GGGCATGGCGGCCAAACCTGTCCTGTTGGACCAGGGTGTGCGACCGGTGG
CTGTGGCTTATGATCCTGTTGAAAAGAGAGTGTACTGGAGTGATGTGGCC
ACTTACAGCATCAACAGGGTGTTCCTGAACGGAACAGGCTCGGAGGTGTT
CTTGGACAGTACCAATGGGATTGCATCAGTAGAAGGTCTTGCAGTTGACT
GGCACAATCGGCGGCTGTACTTCTCCAACCTGGGCCTGCACTACACAGGA
GTGAGCTGGGGGAGGGTGGAGATGGTCGGGCTGGACAGGACGGGACACCG
ACGGCTGCTGGAAGGACATGTACAAAAGCCGAGGTCCATAGTCCTGGACA
CGGAGGGCAGACATGTGTACATCACAGATTGGGGTGAGGAGCCCAAGATC
CTGAGGACTGACCTGGACGGCAGAAATCCCCAGAACATTGTGTCATCAGA
CATGGAGAACCCCAATGGCCTGGCCATCAGTGATGGGAAACTGTACTGGG
TCGACTCACACGTGAAGAGTGGGGAGAACAGCACAGGGACCCTGGAACAA
GCTGACCTGGACCCAGATGATGGGGGACTGGCCATTGGGAGGGACAACAA
AACATGTGCAGAGCCAGGCCAGTTCCTGTTGTATGCTAAAGCGAATGAAG
GACAGATCATGATGTTGACCACAGACCTGGGCATGGCGGCCAAACCTGTC
CTGTTGGACCAGGGTGTGCGACCGGTGGCTGTGGCTTATGATCCTGTTGA
AAAGAGAGTGTACTGGAGTGATGTGGCCACTTACAGCATCAACAGGGTGT
TCCTGAACGGAACAGGCTCGGAGGTGTTCTTGGACAGTACCAATGGGATT
GCATCAGTAGAAGGTCTTGCAGTTGACTGGCACAATCGGCGGCTGTACTT
CTCCAACCTGGGCCTGCACTACACAGGAGTGAGCTGGGGGAGGGTGGAGA
TGGTCGGGCTGGACAGGACGGGACACCGACGGCTGCTGGAAGGACATGTA
CAAAAGCCGAGGTCCATAGTCCTGGACACGGAGGGCAGACATGTGTACAT
CACAGATTGGGGTGAGGAGCCCAAGATCCTGAGGACTGACCTGGACGGCA
GAAATCCCCAGAACATTGTGTCATCAGACATGGAGAACCCCAATGGCCTG
GCCATCAGTGATGGGAAACTGTACTGGGTCGACTCACACGTGAAGAGTGG
GGAGAACAGCACAGGGACCCTGGAACAAGCTGACCTGGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96788gene:BL96788Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96788_cuf1transcript:BL96788_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96788_cuf1-E1BL96788_cuf1-E1-1564476830-288170Branchiostoma lanceolatumexon
BL96788_cuf1-E2BL96788_cuf1-E2-1564476830-288168Branchiostoma lanceolatumexon
BL96788_cuf1-E3BL96788_cuf1-E3-1564476830-288166Branchiostoma lanceolatumexon
BL96788_cuf1-E4BL96788_cuf1-E4-1564476830-288164Branchiostoma lanceolatumexon
BL96788_cuf1-E5BL96788_cuf1-E5-1564476830-288162Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000089genomeSc0000089:671539..673213 -
Properties
Property NameValue
Transcript idBL96788_cuf1
Biotypeprotein_coding