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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96635_cuf1 >transcript:BL96635_cuf1-protein ID=transcript:BL96635_cuf1-protein|Name=transcript:BL96635_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=171bp
RSLQAGGEPRAVTNMASGLVSRYGVVLVLTAWLQTVNGASFRERPEPVAV
LRGQTAVMKCAFIGLADDDTVIWQGGPDDKIISYSRNVLKAYRRHKIVGD
SSKGEFNLEIRDSLLKDDGKYSCYTHPDDTADAALTVVVPMPTPPTISGG
ELTLTAGDQLSLTCRTSGGHP Run BLAST on NCBI mRNA from alignment at Sc0000486:124297..129633+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96635_cuf1 ID=transcript:BL96635_cuf1|Name=transcript:BL96635_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5337bp|location=Sequence derived from alignment at Sc0000486:124297..129633+ (Branchiostoma lanceolatum)
AGGAGTCTACAGGCAGGAGGCGAGCCGCGTGCAGTGACGAACATGGCGTC
TGGACTCGTCTCCAGGTACGGGGTAGTCCTGGTCCTGACGGCGTGGCTTC
AGACAGGTGAGTTTGCGTCAAGCTTTGACTCAGTCAGGTACGTGAGTCTA
TTCCTCTGTTACATTTCCTAGTGGCGACTTGGAACATCCATGTGGGACTT
GAAGTGGGCCAATGATGGATGCGGCTTCTTAGGCAGACTGTATACATGAT
ACATTCGGATAGGAGGATGCCATCAGTGTTTCTTGGAAGATAAACACAAA
TCTGTCAAATCTGTCAAATATGTGAGAGTAAGAGATAAAATATGCATCTG
AAATGGAGAAATACTGCGTTCTAGTCTGGCTGCCTGGGATGAGGATAGGT
ACAATTGCTCAGTAGCGTATGTTTCTCCAATCCCGATCCGCACGGCTTAG
CTAACGTGCTCCAGCCCCGGTCCACCTGGCTCAGCTAACGTGTTCGGTCC
TGATGAACCGTCTCATTAGGACCTTGCCAGTTGCCACGCACGCGGAGGCA
GCGGGGATCGAAAACCACGACTATAACGGAGAAGCACGCGTTACTGAGAA
ATCGGTTTTCCTGCTGTCTTCGTTTTGCATGTAAATTGGTCGATACTGCA
TCTCACATGTCACAGGTATTATAGGACACATGTCACCCGGAACGTGGCTA
AATCCTTCTCATGATAAAACTAAGGAAAGGAAACCCTGGTACGTCTGACT
GCAAGCAGTTAGGGCTTTTCCTTGTGTAGTCAGTGGAAATGGACGTTTCG
CGATGTCCCATGCAACCCTAACTTACCCTACATTCAAACAAAAGATGCCT
CTTTGCGGCGTATTTGGAATATTCAACTACTTTGAATTCTGAAAAGCAGG
AGTAAAGAGTAAGCTAGACGAGTAATGGAAGTCATTTGCATCGAATGTGA
CTTGCGACAACCATTGGACCAATTATCCGTGTGGGCTTCATTGAAATGAA
CCCAATTAAATGTTCCTCGCCGCGCGCCTTGCATCTTCGTTACCTGCTCC
TGACAACCCCCGGCTGAGCGACGCGTGGCTGGACGCGATTGCTTTCATGC
ACAAACCCCGTGTGAAGGTCGCACGCCCACAGCCCAGACTGGCACATGAC
CCGGGCGGTGAAGCTGACAACCCGGAATGAAATTACAGGGACCTTCCAGC
TGAGCTGAACGGGAAATTACAGGGACCTTCAACTGAGCTGAAAGGGAAAG
TGCAAAAGGAAGATCAATATGCGACCTGCCGATCACATCTACTGCTTTTT
CTGTCACGTTCCTATTTTGGGCTCCTTGAAATGGAAACATGGAGTAGAAA
TAGTAAGAAAGGCACTTTTCAATCTTCAGGGGTTCTTAGTTTAATATGCC
GGACATCCTTTGTGCACTAAGTTTTATTGAATCTGATTCTAATTGAATCG
TGACATGTGATTACGACGTCATTAATCATTCAAATTTGCAATTGCTACTT
CAAATCCGGTGACCGAAAATAGTAAATGATTAGGTTTCATCGCATAGATC
AATACATAACGTTGGACACTGCGAGAAGAAATAGGGTTCGAGCATTCATG
ACTTGAAGTCGTCATTTGTATTAAGTGCTGGTGAAAATGTCCTCCTTAAT
TACAACGCCAGGATTAGCTGCTTAGAAAATGTGCCCAGCCAGCATACGTA
GTATACCTGGACACTTTGCAATTCACAAATTCAATACGCTGACAGGCGTG
CTAGAAGCCAGAGCAATGACTGCGCTGGAGGGATGCTTCAAAAGGCTTTC
ACTGAGAGACATACAGAGAATGGGGATCCTCTTAGGAGCGGCGAAGGCCA
ATCACTCATCAAGGCTGAAGACGCATCTTGATAGTAAAATTTTGCCAGTT
GAAAAAAGATGCAAAGCGAATCTAATCGCAGATAAAAGGTTCCGATTGAA
ATCTGCTAGAAAAGAGTGTAATATTCTATCAACATATATGTAGGCATCTA
GCTGACACTTGTTCCTTGATGTGCATCTAAAGGGGATTTCCCGAAAGGCG
AACTGCCTTATCTCTCCCCGGGGCCGAAATGCGCACATCTGTCACATGCC
ACCGTGGCTGGAGGATAGCGCACTTTTCTCCAGCAGCTCTTTTCGTTCAA
GCACAGGGAGGTCCAGATGTTCCCTACATTTTAACCACAATGACGTGTTA
GCTGTTCTTAATCAACACCGAAGTTAGATAAGGATGGAGGGTCGGGTGGC
TTAATGTAAGGCTTCGAACATCTTACAGCGGACAGATCTATCCAAGTCTA
CAAGGTTTCAAGGTACAAGGGTGTATAACTGAGTTATATTAATGTGAGGC
ACTGGAGCCGTTCATAAACATTGACAATAGCTTTATCTAAATTGGACATA
TGTAGTTATGTACTTCAGGATGGATGATTAACTGGGAGGCGAAACAAGGC
GATGCATCGTATTCCGTCATAAATACCAGGTGCACTGCTACAGGTCATTA
CCGCACTGCTGCAAGCTAAGGCATTCTCGCACTGCTACAAGTCATTATCG
TACTGCTGCAAGGCATTATCGCACTGCCGCAAGCTAAGGCATTATCGTAC
TGCTGTAGGTCATTATCGCACTGCTACAAGGCATTCTCGCACTGCTGCAA
GTCATTATCGCACTGCTGCAAGTCATTATCGCACTGCTGCAAGTCATTAT
CGCACTGCTGCAAGTCATTATCGCACTGCTGCAAGTCATTATCGCACTGC
TGCAAGTCATTATCGCACTGCTGCAAGTCATTATCGCACTGCTGCAAGTC
ATTATCGCACTGCTGCAAGTCATTATCGCACTGCTGCAAGTCATTATCGC
ACTGCTGCAAGTCATTATCGCACTGCTGCAAGTCATTATCGCACTGCTGC
AAGTCATTATCGCACTGCTGCAAGTCATTATCGCACTGCTGCAAGTCATT
ATCGCACTGCTGCAAGTCATTATCGCACTGCTGCAAGTCATTATCGCACT
GCTGCAAGTCATTATCGCACTGCTGCAAGTCATTATCGCACTGCTGCAAG
TCATTATCGCACTGCTGCAAGTCATTATCGCACTGCTGCAAGTCATTATC
GCACTGCTGCAAGTCATTATCGCACTGCTGCAAGTCATTATCGCACTGCT
GCAAGTCATTATCGCACTGCTGCAAGTCATTATCGCACTGCTGCAAGTCA
TTATCGCACTGCTGCAAGTCATTATCGCACTGCTGCAAGTCATTATCGCA
CTGCTGCAAGTCATTATCGCACTGCTGCAAGTCATTATCGCACTGCTGCA
AGTCATTATCGCACTGCTGCAAGTCATTATCGCACTGCTGCAAGTCATTA
TCGCACTGCTGCAAGTCATTATCGCACTTCTGCCTTCATCACCGATCCGA
TGAGTGACAACAGATTAAACATGAAGTTATACATACGGAGTGGGTACGTG
TCACATGGCATAGTTGAGTTTGTTATTTTGTAAGATATCCAGACAAACTG
CAACAAAACGCACCTGCTTAGTAGACTGTAGATCTGAATGAACATAACAT
GAATGTAAAACTTGGGTTTATGATTGTGACCCTGTCGACATTAATCTGCA
CTGCTTGTCCGTGAACCCTACAGTCTCTACAGTGTGTTTAATTCCGTTGT
CATGTAAATGATTGATAATCAAATATCAAAGACTGGAGGTGCCTCGCACT
ACGTGATGTGAATGTACTGCCAGGTTTTGATACCCTGCACGGAATATTTC
TCCTCGTGGGCATAGAAAGCACATAATCCAAACAAATCGAAACCCAGCTT
CCAAATCCCAGCCTTAGAGGACCATTTGGTAATAACAAATCTTGAAAAGG
GCTGCTATTCTGGATAACCACACACCGTAAAGCGCTACACGGTAATGGTA
CCGGCCTGTATTGTCCTGAGAAATAGAACAAGTTCCTAGATGGCATGGCG
AAGAAAAGTAATATCGAGCTGACGTGCAGAGTTCATCTGTTATTCCGCGC
ACGCCCCTCTGCCCGAAGCGGTCACCCCAACCTGGCCCTGATTATTCTTC
TCGTGGTCCCTTAACTGTCGTAATGTGCTTATTGGAATTACTTCGGCGTC
TTAACAAAGTTATCGTAACGACCAGAGTGCCGATGAACTTGATTAGGAAA
TAATATACTTACAACGCAGCTTTCCAACTGAACTTGCATTGGTGGTGCTC
GCCAAATGATATTTTTACATTTTCAGATAATCAGGTATGAGGCAAATATT
TATGGGTTGTCACGCCGTGGCCATTTCTCATTGAAATTCTCTTTGAACAT
CGAGTTGATCCCGCGGTTTTAAAGGCATCATGATAATTTGAAGTTTCGGC
CACAAAATATTGAACATCGATACACGTGGCTTGACTGTCACTTTAACCTC
AGGAAGATTGAAAGTGTTAATTCGATATGTACAAGGAAGGCCGCCCGACG
GGTCGATGTTCCAAAGCTGAATACATGTTGTCCTTGTTTTACGAGCAGAG
GCAGTGACCCCCCGCCTCCAAAATAATAGTTCATGATATTTGAAGGTCTC
CTGAATGGTAGACAGACAGCTACATCTATTTGCTTTGAACGTACAATAAG
CGATGTTAGATGAGCTTGCTAAAGAATCAAACAGGGTCATCTTAACTAAA
CAAAACGTTATTTTACTTTATCCAGACAAAAAATGATAATCTGTCTTGGG
AATGATTGATATAGCAGCAGCAGAGAAGAACAGTACATAAAGAGAGTGCA
TTGAACCTACTGACACTTGTTAACCGTGTATTCTCTTTGGAGTGAACGGG
GCATCTTTCCGAGAGAGGCCGGAGCCGGTTGCAGTCCTCCGTGGCCAGAC
TGCGGTCATGAAGTGCGCATTCATCGGACTGGCTGATGACGACACAGTGA
TATGGCAGGGGGGGCCGGACGACAAGATAATATCCTACAGCAGGAACGTC
CTGAAGGCCTACAGACGCCATAAGATTGTCGGCGATAGTTCCAAGGGAGA
ATTCAACTTGGAAATCAGGGATTCTCTGTTGAAGGACGACGGGAAATACA
GCTGCTACACTCACCCGGATGATACCGCCGATGCCGCACTGACAGTGGTC
GGTGAGTACCGCCAAAGTGATCTATGTTAAAAAGATCAATTTGGTACAAT
GAAAGCTAAACGATCTAGTCCAATATACTTTGTTGTGTTCAAAGTATGTT
TGATGATATATGTATCAGGTATCTATTAAATGTTTTAGTTCCGATGCCGA
CTCCGCCCACCATATCAGGCGGAGAGCTGACCTTGACGGCAGGTGATCAG
CTGTCCCTCACCTGCCGAACGTCAGGTGGACATCCCG Coding sequence (CDS) from alignment at Sc0000486:124297..129633+ >transcript:BL96635_cuf1 ID=transcript:BL96635_cuf1|Name=transcript:BL96635_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1539bp|location=Sequence derived from alignment at Sc0000486:124297..129633+ (Branchiostoma lanceolatum)
AGGAGTCTACAGGCAGGAGGCGAGCCGCGTGCAGTGACGAACATGGCGTC
TGGACTCGTCTCCAGGTACGGGGTAGTCCTGGTCCTGACGGCGTGGCTTC
AGACAGTGAACGGGGCATCTTTCCGAGAGAGGCCGGAGCCGGTTGCAGTC
CTCCGTGGCCAGACTGCGGTCATGAAGTGCGCATTCATCGGACTGGCTGA
TGACGACACAGTGATATGGCAGGGGGGGCCGGACGACAAGATAATATCCT
ACAGCAGGAACGTCCTGAAGGCCTACAGACGCCATAAGATTGTCGGCGAT
AGTTCCAAGGGAGAATTCAACTTGGAAATCAGGGATTCTCTGTTGAAGGA
CGACGGGAAATACAGCTGCTACACTCACCCGGATGATACCGCCGATGCCG
CACTGACAGTGGTCGTTCCGATGCCGACTCCGCCCACCATATCAGGCGGA
GAGCTGACCTTGACGGCAGGTGATCAGCTGTCCCTCACCTGCCGAACGTC
AGGTGGACATCCCAGGAGTCTACAGGCAGGAGGCGAGCCGCGTGCAGTGA
CGAACATGGCGTCTGGACTCGTCTCCAGGTACGGGGTAGTCCTGGTCCTG
ACGGCGTGGCTTCAGACAGTGAACGGGGCATCTTTCCGAGAGAGGCCGGA
GCCGGTTGCAGTCCTCCGTGGCCAGACTGCGGTCATGAAGTGCGCATTCA
TCGGACTGGCTGATGACGACACAGTGATATGGCAGGGGGGGCCGGACGAC
AAGATAATATCCTACAGCAGGAACGTCCTGAAGGCCTACAGACGCCATAA
GATTGTCGGCGATAGTTCCAAGGGAGAATTCAACTTGGAAATCAGGGATT
CTCTGTTGAAGGACGACGGGAAATACAGCTGCTACACTCACCCGGATGAT
ACCGCCGATGCCGCACTGACAGTGGTCGTTCCGATGCCGACTCCGCCCAC
CATATCAGGCGGAGAGCTGACCTTGACGGCAGGTGATCAGCTGTCCCTCA
CCTGCCGAACGTCAGGTGGACATCCCAGGAGTCTACAGGCAGGAGGCGAG
CCGCGTGCAGTGACGAACATGGCGTCTGGACTCGTCTCCAGGTACGGGGT
AGTCCTGGTCCTGACGGCGTGGCTTCAGACAGTGAACGGGGCATCTTTCC
GAGAGAGGCCGGAGCCGGTTGCAGTCCTCCGTGGCCAGACTGCGGTCATG
AAGTGCGCATTCATCGGACTGGCTGATGACGACACAGTGATATGGCAGGG
GGGGCCGGACGACAAGATAATATCCTACAGCAGGAACGTCCTGAAGGCCT
ACAGACGCCATAAGATTGTCGGCGATAGTTCCAAGGGAGAATTCAACTTG
GAAATCAGGGATTCTCTGTTGAAGGACGACGGGAAATACAGCTGCTACAC
TCACCCGGATGATACCGCCGATGCCGCACTGACAGTGGTCGTTCCGATGC
CGACTCCGCCCACCATATCAGGCGGAGAGCTGACCTTGACGGCAGGTGAT
CAGCTGTCCCTCACCTGCCGAACGTCAGGTGGACATCCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000486 | genome | Sc0000486:124297..129633 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96635_cuf1 |
| Biotype | protein_coding |
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