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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96632_cuf5 >transcript:BL96632_cuf5-protein ID=transcript:BL96632_cuf5-protein|Name=transcript:BL96632_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=306bp
KRLELGNKFDMTIRHAKVTDSGIYYCRDGDEILVLYDLTVKEPKAVKLSL
VALKEDTLPNRTMGGMTMFTLWSPWGRCNRCGGSGERARIGICHVEGKDF
PKHLGTVIACDSENLPAVAREVFGEEFNRPDERRVEFCTERCPKADRSLT
VVTDSNGLVVSSVRRTGGIASRPTLPPPISRKTMLKMSGENITLTCPGEG
MDSPVSWRNGSAVLTETELKKTTDGRIFVDIINSLNIHNLKKQDGNVYTC
WIKNRHVGTTKVFVRIPVAAEGWKKYSNYAGLVFVALVGLFITIMTLKHS
RDKAFR Run BLAST on NCBI mRNA from alignment at Sc0000541:77296..79968+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96632_cuf5 ID=transcript:BL96632_cuf5|Name=transcript:BL96632_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=2673bp|location=Sequence derived from alignment at Sc0000541:77296..79968+ (Branchiostoma lanceolatum)
ACAAGAGGCTGGAACTGGGGAACAAGTTTGACATGACAATCCGACATGCT
AAGGTGAGCAGAGTACACTGTTATGATCTTTGGTGGAACATTGTCTGTAT
CATTACAGAAGAGGAAGTAGGTGTCGCAAGATGCTGAAATTATAAGACCA
GCTATTACGTTTGTTGGTTGGAGGGGTAGGTCATATGCTGCAATATGTAC
GTAGAGAGATCGACGTCCAGAGAAACAAAAACATTTGCTACACCGGACCG
CGATCGATGCGATACTTGTCACTAGTACTTTTCAAACAGTTTCAAACATG
TCGTACGTTTAAAAGCGCTGGCTGAATATTGCAGCTCACAGTTGATATAT
GTTTCCAGGTAACCGACAGCGGCATATATTACTGCAGAGACGGAGACGAA
ATTCTTGTTCTCTACGATTTGACGGTCAAAGAGCCGAAAGCTGTCAAGCT
AAGTCTCGTTGCTCTCAAAGAAGATACTCTGCCGAACAGGACGATGGGAG
GAATGACGATGTTCACCTTATGGTCGCCATGGGGACGGTGCAACAGGTGT
GGCGGGTCCGGAGAACGAGCCAGGATAGGTACGTGCGCGTGTTTCAATGG
TGCTTTCCTTCCCATAGATAAAAATGACTCATTATTGAAGAGTTCCTAGA
GTCGTATATGTTATTTTCTTTGATAACTCGTAAAAGTCAGTAATTGTCAG
TAATACAACACGATTCTAACGTGAACGTTTCCGGTGTAATTTAGACTCAT
TCTAGACTTGCTTGTTTTGTTGACAAATGTTCACTCAAGCGTCAAAAACA
GTTAAAAAGCCTACTCTGTGCAATGGGACTGTTACTGGTGTTTCAGGCAG
GTCTCATTGGTGGATGAAATTGTTTTATTAACAGTGTTATGACTGGTGTT
TTTGTTTTGTTTGCTTGTTTTTCGATAGGGATTTGTCACGTCGAGGGCAA
AGACTTTCCGAAGCACTTGGGCACCGTCATCGCCTGCGACTCTGAGAATC
TCCCGGCCGTCGCTAGAGAAGTATTTGGCGAGGAATTCAACCGTCCTGAT
GAGAGGAGGGTAGAGTTCTGTACCGAACGCTGTCCAAAAGGTGGGTTCTT
TTTTTATTTGTCATCCCGGTAGGACGTTCAAAACCAAACAGCTTTCTCTC
TGGCACTGACCTTGGTGCTGAACTAACATCATATTAAGCAATCCTGACTG
TCAATCACAATTAGCAGTCCAACCAATGAGAAAATGGCAATTAGCGGTTT
AATCAATGAGAAACTTGCTACATGGCCGTCAAATATTGGCATTTTTATTT
TTGTATTTCGCATTTTTATGTTTTGATGGAGACGGGGCTATGAGATCGTC
CTATTACAATCTAGGAGTCGAAATAACGTGCATTTTCTTGTTCCCGTTGT
CAGATCGGAGCCTTACTGTAGTAACCGACTCGAACGGCCTAGTGGTGAGC
TCAGTACGGAGAACGGGGGGAATAGCGAGTCGCCCCACGCTTCCCCCACC
CATCAGCAGAAAAACTATGTTAAAGATGAGCGGTGAAAACATTACGCTAA
CGTGTCCCGGGGAGGGCATGGACAGCCCCGTCAGCTGGAGGAACGGGAGC
GCGGTGCTCACAGAGACTGAGCTGAAGAAGACTACAGACGGGAGAATCTT
TGTGGACATCATCAACTCCCTTAACATACATAACCTGAAAAAACAGGACG
GGAATGTTTATACCTGTTGGATCAAAAATCGTCACGTGGGCACGACTAAA
GTCTTTGTCAGAATACCGGTGGCTGCAGAGGGATGGAAGAAGTACTCGAA
CTATGCCGGGCTGGTATTCGTAGCTTTAGTGGGCTTGTTCATCACAATAA
TGACTCTTAAGCATAGCAGGGACAAAGCGTTTCGATAGTAGGTTTTCCTT
TATAGTGTGTGATAGCAAAAAGGCGAATGTTATTTTGCAGCTTGGCTGTC
TGGTTTGTTGTTGCCCTCCTTTAATTCAGTCATCTGAAATGAATTTAAAG
GTGCAGACGGTTATCCTGTGATTATATTTAAGACTTATGATAGACATCAT
TAGGCTGTGGTGACTGACATCCGCTGTCTTAAGAGTAAAGACGGTCTTTT
GGCCATGTGAAAAATCTAAAGAAAATGTCAAGTGGCGACTCCTCACTGAG
ATAGACAGTACTACTAGTATCCTATGCTTTCGTTTCATTCTTAGATTTCC
TTTCGTAGTATTACATTGGAACGGGGATTTTAGAATTGGAGTAGATAGCT
GTTTCAACGAAGCACTACTTGTTGCAAAATAAGGTGTAGGATCGTCACTG
AATTCGGTTGTATCCTACATTTGTACATATTATAACGTTTGTTTCCCAAG
TTTTGTTTCTTGCTGCAGTCGTAAGGAACCAGAAAAGGTTATTTAAGGTA
GTAACATGACATTCAAATATTTTAATAAATATCCGGTTTGTGTAGTGCTT
GTCTCCTCTTTATCTGATCATTTGGTTCAATTGGCAAGTTATGTTATCAT
TTTGCCATCGAGAGTGAGGTTATATAACCGTGACGTAATGTGAATTGCAT
ACGTACCTAACTTTCAATTTAACACGGACGTGCAAACACCTAACGATATT
ATATAAAGGCTGCTTGGAATGAAGCTTTGAGCAATGACACAATAAGGCGC
TCTACATGTGACACCGTTTAAGG Coding sequence (CDS) from alignment at Sc0000541:77296..79968+ >transcript:BL96632_cuf5 ID=transcript:BL96632_cuf5|Name=transcript:BL96632_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=3684bp|location=Sequence derived from alignment at Sc0000541:77296..79968+ (Branchiostoma lanceolatum)
AAGAGGCTGGAACTGGGGAACAAGTTTGACATGACAATCCGACATGCTAA
GGTAACCGACAGCGGCATATATTACTGCAGAGACGGAGACGAAATTCTTG
TTCTCTACGATTTGACGGTCAAAGAGCCGAAAGCTGTCAAGCTAAGTCTC
GTTGCTCTCAAAGAAGATACTCTGCCGAACAGGACGATGGGAGGAATGAC
GATGTTCACCTTATGGTCGCCATGGGGACGGTGCAACAGGTGTGGCGGGT
CCGGAGAACGAGCCAGGATAGGGATTTGTCACGTCGAGGGCAAAGACTTT
CCGAAGCACTTGGGCACCGTCATCGCCTGCGACTCTGAGAATCTCCCGGC
CGTCGCTAGAGAAGTATTTGGCGAGGAATTCAACCGTCCTGATGAGAGGA
GGGTAGAGTTCTGTACCGAACGCTGTCCAAAAGCAGATCGGAGCCTTACT
GTAGTAACCGACTCGAACGGCCTAGTGGTGAGCTCAGTACGGAGAACGGG
GGGAATAGCGAGTCGCCCCACGCTTCCCCCACCCATCAGCAGAAAAACTA
TGTTAAAGATGAGCGGTGAAAACATTACGCTAACGTGTCCCGGGGAGGGC
ATGGACAGCCCCGTCAGCTGGAGGAACGGGAGCGCGGTGCTCACAGAGAC
TGAGCTGAAGAAGACTACAGACGGGAGAATCTTTGTGGACATCATCAACT
CCCTTAACATACATAACCTGAAAAAACAGGACGGGAATGTTTATACCTGT
TGGATCAAAAATCGTCACGTGGGCACGACTAAAGTCTTTGTCAGAATACC
GGTGGCTGCAGAGGGATGGAAGAAGTACTCGAACTATGCCGGGCTGGTAT
TCGTAGCTTTAGTGGGCTTGTTCATCACAATAATGACTCTTAAGCATAGC
AGGGACAAAGCGTTTCGATAGAAGAGGCTGGAACTGGGGAACAAGTTTGA
CATGACAATCCGACATGCTAAGGTAACCGACAGCGGCATATATTACTGCA
GAGACGGAGACGAAATTCTTGTTCTCTACGATTTGACGGTCAAAGAGCCG
AAAGCTGTCAAGCTAAGTCTCGTTGCTCTCAAAGAAGATACTCTGCCGAA
CAGGACGATGGGAGGAATGACGATGTTCACCTTATGGTCGCCATGGGGAC
GGTGCAACAGGTGTGGCGGGTCCGGAGAACGAGCCAGGATAGGGATTTGT
CACGTCGAGGGCAAAGACTTTCCGAAGCACTTGGGCACCGTCATCGCCTG
CGACTCTGAGAATCTCCCGGCCGTCGCTAGAGAAGTATTTGGCGAGGAAT
TCAACCGTCCTGATGAGAGGAGGGTAGAGTTCTGTACCGAACGCTGTCCA
AAAGCAGATCGGAGCCTTACTGTAGTAACCGACTCGAACGGCCTAGTGGT
GAGCTCAGTACGGAGAACGGGGGGAATAGCGAGTCGCCCCACGCTTCCCC
CACCCATCAGCAGAAAAACTATGTTAAAGATGAGCGGTGAAAACATTACG
CTAACGTGTCCCGGGGAGGGCATGGACAGCCCCGTCAGCTGGAGGAACGG
GAGCGCGGTGCTCACAGAGACTGAGCTGAAGAAGACTACAGACGGGAGAA
TCTTTGTGGACATCATCAACTCCCTTAACATACATAACCTGAAAAAACAG
GACGGGAATGTTTATACCTGTTGGATCAAAAATCGTCACGTGGGCACGAC
TAAAGTCTTTGTCAGAATACCGGTGGCTGCAGAGGGATGGAAGAAGTACT
CGAACTATGCCGGGCTGGTATTCGTAGCTTTAGTGGGCTTGTTCATCACA
ATAATGACTCTTAAGCATAGCAGGGACAAAGCGTTTCGATAGAAGAGGCT
GGAACTGGGGAACAAGTTTGACATGACAATCCGACATGCTAAGGTAACCG
ACAGCGGCATATATTACTGCAGAGACGGAGACGAAATTCTTGTTCTCTAC
GATTTGACGGTCAAAGAGCCGAAAGCTGTCAAGCTAAGTCTCGTTGCTCT
CAAAGAAGATACTCTGCCGAACAGGACGATGGGAGGAATGACGATGTTCA
CCTTATGGTCGCCATGGGGACGGTGCAACAGGTGTGGCGGGTCCGGAGAA
CGAGCCAGGATAGGGATTTGTCACGTCGAGGGCAAAGACTTTCCGAAGCA
CTTGGGCACCGTCATCGCCTGCGACTCTGAGAATCTCCCGGCCGTCGCTA
GAGAAGTATTTGGCGAGGAATTCAACCGTCCTGATGAGAGGAGGGTAGAG
TTCTGTACCGAACGCTGTCCAAAAGCAGATCGGAGCCTTACTGTAGTAAC
CGACTCGAACGGCCTAGTGGTGAGCTCAGTACGGAGAACGGGGGGAATAG
CGAGTCGCCCCACGCTTCCCCCACCCATCAGCAGAAAAACTATGTTAAAG
ATGAGCGGTGAAAACATTACGCTAACGTGTCCCGGGGAGGGCATGGACAG
CCCCGTCAGCTGGAGGAACGGGAGCGCGGTGCTCACAGAGACTGAGCTGA
AGAAGACTACAGACGGGAGAATCTTTGTGGACATCATCAACTCCCTTAAC
ATACATAACCTGAAAAAACAGGACGGGAATGTTTATACCTGTTGGATCAA
AAATCGTCACGTGGGCACGACTAAAGTCTTTGTCAGAATACCGGTGGCTG
CAGAGGGATGGAAGAAGTACTCGAACTATGCCGGGCTGGTATTCGTAGCT
TTAGTGGGCTTGTTCATCACAATAATGACTCTTAAGCATAGCAGGGACAA
AGCGTTTCGATAGAAGAGGCTGGAACTGGGGAACAAGTTTGACATGACAA
TCCGACATGCTAAGGTAACCGACAGCGGCATATATTACTGCAGAGACGGA
GACGAAATTCTTGTTCTCTACGATTTGACGGTCAAAGAGCCGAAAGCTGT
CAAGCTAAGTCTCGTTGCTCTCAAAGAAGATACTCTGCCGAACAGGACGA
TGGGAGGAATGACGATGTTCACCTTATGGTCGCCATGGGGACGGTGCAAC
AGGTGTGGCGGGTCCGGAGAACGAGCCAGGATAGGGATTTGTCACGTCGA
GGGCAAAGACTTTCCGAAGCACTTGGGCACCGTCATCGCCTGCGACTCTG
AGAATCTCCCGGCCGTCGCTAGAGAAGTATTTGGCGAGGAATTCAACCGT
CCTGATGAGAGGAGGGTAGAGTTCTGTACCGAACGCTGTCCAAAAGCAGA
TCGGAGCCTTACTGTAGTAACCGACTCGAACGGCCTAGTGGTGAGCTCAG
TACGGAGAACGGGGGGAATAGCGAGTCGCCCCACGCTTCCCCCACCCATC
AGCAGAAAAACTATGTTAAAGATGAGCGGTGAAAACATTACGCTAACGTG
TCCCGGGGAGGGCATGGACAGCCCCGTCAGCTGGAGGAACGGGAGCGCGG
TGCTCACAGAGACTGAGCTGAAGAAGACTACAGACGGGAGAATCTTTGTG
GACATCATCAACTCCCTTAACATACATAACCTGAAAAAACAGGACGGGAA
TGTTTATACCTGTTGGATCAAAAATCGTCACGTGGGCACGACTAAAGTCT
TTGTCAGAATACCGGTGGCTGCAGAGGGATGGAAGAAGTACTCGAACTAT
GCCGGGCTGGTATTCGTAGCTTTAGTGGGCTTGTTCATCACAATAATGAC
TCTTAAGCATAGCAGGGACAAAGCGTTTCGATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000541 | genome | Sc0000541:77296..79968 + |
Properties
| Property Name | Value |
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| Transcript id | BL96632_cuf5 |
| Biotype | protein_coding |
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