transcript:BL96631_cuf7 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96631_cuf7
Unique Nametranscript:BL96631_cuf7
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96631_cuf7

>transcript:BL96631_cuf7-protein ID=transcript:BL96631_cuf7-protein|Name=transcript:BL96631_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=180bp
DVDECDLELDNCDDDSDCDNTPGSFQCQCKDGYLGNGTVCKRIVTTYASF
KMPNLQPVEDYKDENSTAYMALKDYLESLVRNMSDEVTGVRLLDVRFPEG
GVVFELNVTEDELPDVYDAIVAEGLDGMVGPYTVEGNATTVGNISLLVAL
PECNDTSTNDCDPEATCVEEYLFYTCVCNH
Run BLAST on NCBI

mRNA from alignment at Sc0000391:55610..57664-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96631_cuf7 ID=transcript:BL96631_cuf7|Name=transcript:BL96631_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=2055bp|location=Sequence derived from alignment at Sc0000391:55610..57664- (Branchiostoma lanceolatum)
AGATGTGGATGAGTGTGACCTTGAACTCGACAACTGTGATGACGATTCCG
ACTGTGACAACACCCCTGGCTCGTTCCAATGTCAATGTAAAGATGGCTAC
TTAGGCAATGGAACTGTCTGCAAACGTAAGACCCAGAGACTACTTCCTTA
AAGGGAATCTTTATTTGTATTCTGTTTTGGAGGAGCCAAACTATAATAAT
CCTATTCAATTACATGTATCTAATAATTTGTTGGATGTTTTACTCAAATA
TCACTGCTGAATTGAAAGATCAACTTAATAACAAAGTCTATGGGATGGGG
GAAGTTTGTGTGCCCTGATACACACAGGTCAGAAGAATGTTTTCCTTTTT
GTCTTTATCTTGACCTATTGCTAAGAAAATGCCTAATTGAATGTAAAGCA
TGAAATAAATTTTGTACTATGTTCAACAACTATTGATACTACAGACTATG
CTCTTTATCTCCAGGCATTGTAACCACATATGCATCATTCAAGATGCCAA
ACCTACAACCAGTAGAAGATTACAAAGATGAAAACTCTACAGCATACATG
GCTCTGAAGGACTATTTGGAGTCACTTGTAAGTGCTTGATTCGTTCATTC
TCCTTGATATTGGTAACATTCAATTTTATTCTTTTGCAGATACATGTAAT
TAGTTGATAATCCATATTCCCTTTTAATTGATATATTGACAGAGTCTTTG
TTTTTNCTTTTAATTGATATATTGACAGAATCTTTGCTTCTCTATGATAG
GTGAGGAACATGTCAGATGAGGTCACTGGAGTTAGACTGCTTGATGTCAG
GTAATGTTATTATAGTATTAATGGCATAATGATACAGCTGTGCAAAAATG
TGTATTGATACAGAATAAACAGGAAACCCTGATTAATGTACATGGATATC
TTATTAACAAATCTGTTCGAAATCTGATAGGTAGATTACATTACGTTAAA
TGTCAAAATCCTTCCCACACACTTTGGTGAAAAGGGGGTGGTGCATCTCC
ATTTCTGTAGCCCTTGGGCCACACAAGTATTGAAAGTGAAACTCCAATAC
TTTTCTTTATATTTGTTGAGTGCTAAGCTGAGAAAGCTATATATACATCT
TTAAGTCTTTGGTATGATCCAACCAGGGGTTTGAACAGGCAATCTTCGGA
ATACAAAATGAATGCTCTGGTAGATGAACAAATCATAAACAAATTTGGCC
AGCTTATGTGGTCATGACAGATGTGATGCAACCAGTGAATCAAATAATGA
ACAAACAGTTGTGTTTATGAATAATTCTGCCCACCTAGGTTCCCAGAGGG
TGGCGTTGTGTTTGAGTTGAATGTGACAGAAGATGAGTTACCTGACGTGT
ACGATGCCATAGTAGCAGAGGGGCTGGATGGCATGGTCGGTCCTTACACA
GTAGAGGGGAACGCCACCACAGTCGGGAACATCTGTATGTACTGGGATAA
TGTTTTATACAGATTAATAACAAATAACATTAATGCCTTAGTTTGGTGAT
TCCATTTGCCATGTTTTCTTTTCAAGATTTTAGATTTACTCAAGTAAACT
ATATCATCAAGGAATAGATTTTCATACAGAAGTGAGTAGCAGAAAAAAAT
AGCATGAGGCAAGATAGAAATAGAGATTTTTAACTGTAAGACAGACAAAC
TCTCAGAATGTTTATGAGTCTTGTAGAAAAATTTTGTATGATAGCTGAGA
TGCAAAGCTACTTCTCTGAAAAGATTAGCTTCCTGTAAACTGTTTTTTTT
CAGCAGAACTTGTAGGGAAAATCTTCTTGAAATGTTTGAAATTTCAACTG
CCTCTTGCTATCTTTTTAAGGCTGTAGAACTTCTTTCCTCGTATGATACT
ATACGACATATTGTCATTTGTCCACTAGCGCTGCTGGTAGCCTAACCAGA
GTGTAACGACACCAGTACTAACGACTGTGTTGCCATATGTCCCACTAGCT
CTGCTGGTAGCCTTACCTGAGTGTAATGACACCAGTACTAACGACTGTGA
CCCTGAGGCCACCTGTGTGGAGGAGTACCTGTTTTACACCTGTGTGTGTA
ACCAT

Coding sequence (CDS) from alignment at Sc0000391:55610..57664-

>transcript:BL96631_cuf7 ID=transcript:BL96631_cuf7|Name=transcript:BL96631_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=2700bp|location=Sequence derived from alignment at Sc0000391:55610..57664- (Branchiostoma lanceolatum)
GATGTGGATGAGTGTGACCTTGAACTCGACAACTGTGATGACGATTCCGA
CTGTGACAACACCCCTGGCTCGTTCCAATGTCAATGTAAAGATGGCTACT
TAGGCAATGGAACTGTCTGCAAACGCATTGTAACCACATATGCATCATTC
AAGATGCCAAACCTACAACCAGTAGAAGATTACAAAGATGAAAACTCTAC
AGCATACATGGCTCTGAAGGACTATTTGGAGTCACTTGTGAGGAACATGT
CAGATGAGGTCACTGGAGTTAGACTGCTTGATGTCAGGTTCCCAGAGGGT
GGCGTTGTGTTTGAGTTGAATGTGACAGAAGATGAGTTACCTGACGTGTA
CGATGCCATAGTAGCAGAGGGGCTGGATGGCATGGTCGGTCCTTACACAG
TAGAGGGGAACGCCACCACAGTCGGGAACATCTCTCTGCTGGTAGCCTTA
CCTGAGTGTAATGACACCAGTACTAACGACTGTGACCCTGAGGCCACCTG
TGTGGAGGAGTACCTGTTTTACACCTGTGTGTGTAACCATGATGTGGATG
AGTGTGACCTTGAACTCGACAACTGTGATGACGATTCCGACTGTGACAAC
ACCCCTGGCTCGTTCCAATGTCAATGTAAAGATGGCTACTTAGGCAATGG
AACTGTCTGCAAACGCATTGTAACCACATATGCATCATTCAAGATGCCAA
ACCTACAACCAGTAGAAGATTACAAAGATGAAAACTCTACAGCATACATG
GCTCTGAAGGACTATTTGGAGTCACTTGTGAGGAACATGTCAGATGAGGT
CACTGGAGTTAGACTGCTTGATGTCAGGTTCCCAGAGGGTGGCGTTGTGT
TTGAGTTGAATGTGACAGAAGATGAGTTACCTGACGTGTACGATGCCATA
GTAGCAGAGGGGCTGGATGGCATGGTCGGTCCTTACACAGTAGAGGGGAA
CGCCACCACAGTCGGGAACATCTCTCTGCTGGTAGCCTTACCTGAGTGTA
ATGACACCAGTACTAACGACTGTGACCCTGAGGCCACCTGTGTGGAGGAG
TACCTGTTTTACACCTGTGTGTGTAACCATGATGTGGATGAGTGTGACCT
TGAACTCGACAACTGTGATGACGATTCCGACTGTGACAACACCCCTGGCT
CGTTCCAATGTCAATGTAAAGATGGCTACTTAGGCAATGGAACTGTCTGC
AAACGCATTGTAACCACATATGCATCATTCAAGATGCCAAACCTACAACC
AGTAGAAGATTACAAAGATGAAAACTCTACAGCATACATGGCTCTGAAGG
ACTATTTGGAGTCACTTGTGAGGAACATGTCAGATGAGGTCACTGGAGTT
AGACTGCTTGATGTCAGGTTCCCAGAGGGTGGCGTTGTGTTTGAGTTGAA
TGTGACAGAAGATGAGTTACCTGACGTGTACGATGCCATAGTAGCAGAGG
GGCTGGATGGCATGGTCGGTCCTTACACAGTAGAGGGGAACGCCACCACA
GTCGGGAACATCTCTCTGCTGGTAGCCTTACCTGAGTGTAATGACACCAG
TACTAACGACTGTGACCCTGAGGCCACCTGTGTGGAGGAGTACCTGTTTT
ACACCTGTGTGTGTAACCATGATGTGGATGAGTGTGACCTTGAACTCGAC
AACTGTGATGACGATTCCGACTGTGACAACACCCCTGGCTCGTTCCAATG
TCAATGTAAAGATGGCTACTTAGGCAATGGAACTGTCTGCAAACGCATTG
TAACCACATATGCATCATTCAAGATGCCAAACCTACAACCAGTAGAAGAT
TACAAAGATGAAAACTCTACAGCATACATGGCTCTGAAGGACTATTTGGA
GTCACTTGTGAGGAACATGTCAGATGAGGTCACTGGAGTTAGACTGCTTG
ATGTCAGGTTCCCAGAGGGTGGCGTTGTGTTTGAGTTGAATGTGACAGAA
GATGAGTTACCTGACGTGTACGATGCCATAGTAGCAGAGGGGCTGGATGG
CATGGTCGGTCCTTACACAGTAGAGGGGAACGCCACCACAGTCGGGAACA
TCTCTCTGCTGGTAGCCTTACCTGAGTGTAATGACACCAGTACTAACGAC
TGTGACCCTGAGGCCACCTGTGTGGAGGAGTACCTGTTTTACACCTGTGT
GTGTAACCATGATGTGGATGAGTGTGACCTTGAACTCGACAACTGTGATG
ACGATTCCGACTGTGACAACACCCCTGGCTCGTTCCAATGTCAATGTAAA
GATGGCTACTTAGGCAATGGAACTGTCTGCAAACGCATTGTAACCACATA
TGCATCATTCAAGATGCCAAACCTACAACCAGTAGAAGATTACAAAGATG
AAAACTCTACAGCATACATGGCTCTGAAGGACTATTTGGAGTCACTTGTG
AGGAACATGTCAGATGAGGTCACTGGAGTTAGACTGCTTGATGTCAGGTT
CCCAGAGGGTGGCGTTGTGTTTGAGTTGAATGTGACAGAAGATGAGTTAC
CTGACGTGTACGATGCCATAGTAGCAGAGGGGCTGGATGGCATGGTCGGT
CCTTACACAGTAGAGGGGAACGCCACCACAGTCGGGAACATCTCTCTGCT
GGTAGCCTTACCTGAGTGTAATGACACCAGTACTAACGACTGTGACCCTG
AGGCCACCTGTGTGGAGGAGTACCTGTTTTACACCTGTGTGTGTAACCAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96631gene:BL96631Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96631_cuf7transcript:BL96631_cuf7-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96631_cuf7-E1BL96631_cuf7-E1-1564476830-455246Branchiostoma lanceolatumexon
BL96631_cuf7-E2BL96631_cuf7-E2-1564476830-455243Branchiostoma lanceolatumexon
BL96631_cuf7-E3BL96631_cuf7-E3-1564476830-455241Branchiostoma lanceolatumexon
BL96631_cuf7-E4BL96631_cuf7-E4-1564476830-455239Branchiostoma lanceolatumexon
BL96631_cuf7-E5BL96631_cuf7-E5-1564476830-455237Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000391genomeSc0000391:55610..57664 -
Properties
Property NameValue
Transcript idBL96631_cuf7
Biotypeprotein_coding