transcript:BL96624_cuf5 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96624_cuf5
Unique Nametranscript:BL96624_cuf5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96624_cuf5

>transcript:BL96624_cuf5-protein ID=transcript:BL96624_cuf5-protein|Name=transcript:BL96624_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=397bp
GLALCDDTLRLICGKIGDWKLVCTTLGCDYAFIHKFQDQYHDDDYLSCFH
ALKTWRDTFDASYDDKVNILCKTLRNCGYTDCAGIVDDKHRTECSVVLCD
SQIDIYSKKLSSDWKNFCTYLGCDDDFITKIEQQCGHDNYLCTSTALKHW
RDTVDCSYVEKIDLFCHACDSCGYHDIAVDCRDNFRHEVYVTSSVSTSYG
TSSVVSTQSVGGSASTVTGLALCDDTFHIICTKISTDWRAVCIALGCGSD
MITKVVSECGSDDVLCCGTMLKYWRDSWHVDYSDKVDTLCTALRTCGYTD
CATTVYAKYRTEHSVALCDGQIDIYCKTLSHDWKTFCHALDCSNDFITKI
EVECGHDDYLCCGTAIKTWRDTVDCSYADKIDHFCNACYHCGFDDIA
Run BLAST on NCBI

mRNA from alignment at Sc0001373:5966..7407+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96624_cuf5 ID=transcript:BL96624_cuf5|Name=transcript:BL96624_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=1442bp|location=Sequence derived from alignment at Sc0001373:5966..7407+ (Branchiostoma lanceolatum)
GGATTGGCTCTGTGTGACGACACACTGCGCCTTATCTGCGGCAAGATCGG
AGACTGGAAGCTGGTCTGCACAACACTTGGCTGTGACTACGCCTTCATCC
ACAAGTTCCAGGATCAGTACCATGACGACGACTACCTCAGCTGCTTCCAT
GCCCTGAAGACCTGGCGCGACACCTTCGACGCAAGCTATGACGACAAGGT
CAACATCTTGTGCAAGACCCTGCGTAACTGTGGATACACGGATTGCGCTG
GAATCGTCGATGACAAGCACCGCACCGAGTGCAGCGTCGTACTGTGCGAC
AGTCAGATCGACATTTACAGCAAGAAGTTGAGCAGTGACTGGAAGAACTT
CTGCACATATTTGGGCTGCGATGACGACTTCATCACCAAAATCGAGCAGC
AATGTGGTCATGACAACTATCTGTGTACCAGCACTGCCCTCAAGCACTGG
CGTGACACGGTCGACTGCAGCTACGTGGAGAAGATCGACCTCTTCTGCCA
TGCCTGCGACAGCTGTGGCTACCACGATATCGCAGTGGACTGCAGAGACA
ACTTCCGCCATGAAGTCTATGGTTAGTATCTATCTACTAATAGTAACCCT
GTTTAACTATGAGAAAGCGTAGGTCATCGCTTCTTCAAAAATGTATATTT
TATGTCCGCCTTGACACTTATCTTCCGCATACTTTCTTGTAGTGACGTCG
AGTGTTTCAACAAGCTACGGAACGTCCTCTGTGGTGTCGACCCAGTCCGT
CGGTGGCAGCGCTTCAACTGTCACAGGTTTGTCTCTTTCTTTGCAACCTA
CTGCCAGTTTTAATCCATTATTCCGCGCATTGCTATACGTTAGCAGGATA
GAAGAAAACCTCTATGGAATTGGTGATTGACACCGGTTTATGGTCTTGTT
CTTAGGACTGGCACTGTGTGACGACACCTTCCACATCATCTGTACCAAGA
TCTCTACCGACTGGAGAGCTGTGTGTATCGCACTGGGTTGCGGCTCGGAC
ATGATCACAAAGGTCGTCTCTGAGTGTGGCTCGGATGACGTTTTGTGCTG
CGGCACTATGCTCAAGTATTGGCGTGACTCTTGGCATGTGGACTACTCCG
ACAAGGTCGACACCCTCTGCACTGCCCTGCGTACATGCGGCTACACCGAC
TGTGCCACCACTGTCTACGCAAAGTACCGCACTGAACACAGCGTGGCTCT
TTGTGATGGCCAGATTGACATCTACTGCAAGACCCTGAGTCACGATTGGA
AGACATTCTGTCATGCCCTTGACTGCAGCAACGACTTCATCACTAAGATA
GAGGTCGAGTGTGGCCACGACGACTACTTGTGTTGTGGTACGGCTATCAA
GACCTGGCGTGACACTGTGGATTGCAGCTACGCTGACAAGATCGACCACT
TCTGCAACGCCTGTTACCACTGTGGTTTCGACGACATCGCCG

Coding sequence (CDS) from alignment at Sc0001373:5966..7407+

>transcript:BL96624_cuf5 ID=transcript:BL96624_cuf5|Name=transcript:BL96624_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=3573bp|location=Sequence derived from alignment at Sc0001373:5966..7407+ (Branchiostoma lanceolatum)
GGATTGGCTCTGTGTGACGACACACTGCGCCTTATCTGCGGCAAGATCGG
AGACTGGAAGCTGGTCTGCACAACACTTGGCTGTGACTACGCCTTCATCC
ACAAGTTCCAGGATCAGTACCATGACGACGACTACCTCAGCTGCTTCCAT
GCCCTGAAGACCTGGCGCGACACCTTCGACGCAAGCTATGACGACAAGGT
CAACATCTTGTGCAAGACCCTGCGTAACTGTGGATACACGGATTGCGCTG
GAATCGTCGATGACAAGCACCGCACCGAGTGCAGCGTCGTACTGTGCGAC
AGTCAGATCGACATTTACAGCAAGAAGTTGAGCAGTGACTGGAAGAACTT
CTGCACATATTTGGGCTGCGATGACGACTTCATCACCAAAATCGAGCAGC
AATGTGGTCATGACAACTATCTGTGTACCAGCACTGCCCTCAAGCACTGG
CGTGACACGGTCGACTGCAGCTACGTGGAGAAGATCGACCTCTTCTGCCA
TGCCTGCGACAGCTGTGGCTACCACGATATCGCAGTGGACTGCAGAGACA
ACTTCCGCCATGAAGTCTATGTGACGTCGAGTGTTTCAACAAGCTACGGA
ACGTCCTCTGTGGTGTCGACCCAGTCCGTCGGTGGCAGCGCTTCAACTGT
CACAGGACTGGCACTGTGTGACGACACCTTCCACATCATCTGTACCAAGA
TCTCTACCGACTGGAGAGCTGTGTGTATCGCACTGGGTTGCGGCTCGGAC
ATGATCACAAAGGTCGTCTCTGAGTGTGGCTCGGATGACGTTTTGTGCTG
CGGCACTATGCTCAAGTATTGGCGTGACTCTTGGCATGTGGACTACTCCG
ACAAGGTCGACACCCTCTGCACTGCCCTGCGTACATGCGGCTACACCGAC
TGTGCCACCACTGTCTACGCAAAGTACCGCACTGAACACAGCGTGGCTCT
TTGTGATGGCCAGATTGACATCTACTGCAAGACCCTGAGTCACGATTGGA
AGACATTCTGTCATGCCCTTGACTGCAGCAACGACTTCATCACTAAGATA
GAGGTCGAGTGTGGCCACGACGACTACTTGTGTTGTGGTACGGCTATCAA
GACCTGGCGTGACACTGTGGATTGCAGCTACGCTGACAAGATCGACCACT
TCTGCAACGCCTGTTACCACTGTGGTTTCGACGACATCGCCGGATTGGCT
CTGTGTGACGACACACTGCGCCTTATCTGCGGCAAGATCGGAGACTGGAA
GCTGGTCTGCACAACACTTGGCTGTGACTACGCCTTCATCCACAAGTTCC
AGGATCAGTACCATGACGACGACTACCTCAGCTGCTTCCATGCCCTGAAG
ACCTGGCGCGACACCTTCGACGCAAGCTATGACGACAAGGTCAACATCTT
GTGCAAGACCCTGCGTAACTGTGGATACACGGATTGCGCTGGAATCGTCG
ATGACAAGCACCGCACCGAGTGCAGCGTCGTACTGTGCGACAGTCAGATC
GACATTTACAGCAAGAAGTTGAGCAGTGACTGGAAGAACTTCTGCACATA
TTTGGGCTGCGATGACGACTTCATCACCAAAATCGAGCAGCAATGTGGTC
ATGACAACTATCTGTGTACCAGCACTGCCCTCAAGCACTGGCGTGACACG
GTCGACTGCAGCTACGTGGAGAAGATCGACCTCTTCTGCCATGCCTGCGA
CAGCTGTGGCTACCACGATATCGCAGTGGACTGCAGAGACAACTTCCGCC
ATGAAGTCTATGTGACGTCGAGTGTTTCAACAAGCTACGGAACGTCCTCT
GTGGTGTCGACCCAGTCCGTCGGTGGCAGCGCTTCAACTGTCACAGGACT
GGCACTGTGTGACGACACCTTCCACATCATCTGTACCAAGATCTCTACCG
ACTGGAGAGCTGTGTGTATCGCACTGGGTTGCGGCTCGGACATGATCACA
AAGGTCGTCTCTGAGTGTGGCTCGGATGACGTTTTGTGCTGCGGCACTAT
GCTCAAGTATTGGCGTGACTCTTGGCATGTGGACTACTCCGACAAGGTCG
ACACCCTCTGCACTGCCCTGCGTACATGCGGCTACACCGACTGTGCCACC
ACTGTCTACGCAAAGTACCGCACTGAACACAGCGTGGCTCTTTGTGATGG
CCAGATTGACATCTACTGCAAGACCCTGAGTCACGATTGGAAGACATTCT
GTCATGCCCTTGACTGCAGCAACGACTTCATCACTAAGATAGAGGTCGAG
TGTGGCCACGACGACTACTTGTGTTGTGGTACGGCTATCAAGACCTGGCG
TGACACTGTGGATTGCAGCTACGCTGACAAGATCGACCACTTCTGCAACG
CCTGTTACCACTGTGGTTTCGACGACATCGCCGGATTGGCTCTGTGTGAC
GACACACTGCGCCTTATCTGCGGCAAGATCGGAGACTGGAAGCTGGTCTG
CACAACACTTGGCTGTGACTACGCCTTCATCCACAAGTTCCAGGATCAGT
ACCATGACGACGACTACCTCAGCTGCTTCCATGCCCTGAAGACCTGGCGC
GACACCTTCGACGCAAGCTATGACGACAAGGTCAACATCTTGTGCAAGAC
CCTGCGTAACTGTGGATACACGGATTGCGCTGGAATCGTCGATGACAAGC
ACCGCACCGAGTGCAGCGTCGTACTGTGCGACAGTCAGATCGACATTTAC
AGCAAGAAGTTGAGCAGTGACTGGAAGAACTTCTGCACATATTTGGGCTG
CGATGACGACTTCATCACCAAAATCGAGCAGCAATGTGGTCATGACAACT
ATCTGTGTACCAGCACTGCCCTCAAGCACTGGCGTGACACGGTCGACTGC
AGCTACGTGGAGAAGATCGACCTCTTCTGCCATGCCTGCGACAGCTGTGG
CTACCACGATATCGCAGTGGACTGCAGAGACAACTTCCGCCATGAAGTCT
ATGTGACGTCGAGTGTTTCAACAAGCTACGGAACGTCCTCTGTGGTGTCG
ACCCAGTCCGTCGGTGGCAGCGCTTCAACTGTCACAGGACTGGCACTGTG
TGACGACACCTTCCACATCATCTGTACCAAGATCTCTACCGACTGGAGAG
CTGTGTGTATCGCACTGGGTTGCGGCTCGGACATGATCACAAAGGTCGTC
TCTGAGTGTGGCTCGGATGACGTTTTGTGCTGCGGCACTATGCTCAAGTA
TTGGCGTGACTCTTGGCATGTGGACTACTCCGACAAGGTCGACACCCTCT
GCACTGCCCTGCGTACATGCGGCTACACCGACTGTGCCACCACTGTCTAC
GCAAAGTACCGCACTGAACACAGCGTGGCTCTTTGTGATGGCCAGATTGA
CATCTACTGCAAGACCCTGAGTCACGATTGGAAGACATTCTGTCATGCCC
TTGACTGCAGCAACGACTTCATCACTAAGATAGAGGTCGAGTGTGGCCAC
GACGACTACTTGTGTTGTGGTACGGCTATCAAGACCTGGCGTGACACTGT
GGATTGCAGCTACGCTGACAAGATCGACCACTTCTGCAACGCCTGTTACC
ACTGTGGTTTCGACGACATCGCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96624gene:BL96624Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96624_cuf5-E1BL96624_cuf5-E1-1564476830-508211Branchiostoma lanceolatumexon
BL96624_cuf5-E2BL96624_cuf5-E2-1564476830-508213Branchiostoma lanceolatumexon
BL96624_cuf5-E3BL96624_cuf5-E3-1564476830-508216Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96624_cuf5transcript:BL96624_cuf5-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0001373genomeSc0001373:5966..7407 +
Properties
Property NameValue
Transcript idBL96624_cuf5
Biotypeprotein_coding