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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96562_cuf3 >transcript:BL96562_cuf3-protein ID=transcript:BL96562_cuf3-protein|Name=transcript:BL96562_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=212bp
SVSVYERVSQITRPGIKTDEVIDMYKAWAKVYDKDMESEGYNGPHKVAKV
LAESQGDKRDIRVLDVAAGTGLCGQELSKLGFSNVDALDASQDMLDVAKT
KNVYKNFIKEFLGPNRLGIDDDTYDAVIGSGLFATGHVKPDCLEELIRVV
KPGGVICLNIGEERLRTNEDCKDLESRMAALQSKSMWQQVSREIFPGYTF
GSDGVVYLYKVV Run BLAST on NCBI mRNA from alignment at Sc0000152:472128..475232- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96562_cuf3 ID=transcript:BL96562_cuf3|Name=transcript:BL96562_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3105bp|location=Sequence derived from alignment at Sc0000152:472128..475232- (Branchiostoma lanceolatum)
GTCGGTCTCAGTTTATGAGAGGGTTTCTCAAATAACCCGTCCAGGAATTA
AGACGGATGAAGTGATAGACATGTATAAGGCGTGGGCTAAGGTGTATGAC
AAGGTGGGTTCTTATGTGAGAGACGGGTGTGGTGGGTGTTGGCGTACCTA
CAGTACATGTACATTACTTAGCACTCGTTGACATTTATCCGCAAAGTGAC
CTTTGTACCTTCGTAATGCATTGGTGACAAGGGGTGCCGTAGGGGGTGTA
GCCGATCTAGGCCCCGGTCGGGCTCTGAAACCGCCTGCCGTCGTCACAAT
CAGATTCACCTTCACGCTGCCATGTAGAGGTCCCTTTCACTAGAAAATGT
TGAACCGCTCATTGGTATTAAAAGTAGTCGATGTCCGGCACCCGCCCTGG
CGGTGTCGCCAGGTGACCCCTGTGGGGTTCGACAGGTGTCACTCACAGGC
CGGTCGGGCAGCTGTAGGTGTATTTTCGTCGGGACACGGTCTGATTCTAA
ATCCGATTCAAAATCAACCGGGCTCCACCGGGCTGACTTCAAGTTCAAAT
GAAAATCAAGACGACTGAGTTCCAAAGTGGTCCAGTAGTCTTAGGGACCC
CCTCGCGGCTAAGCACGAAAGGGCCGAAAGTGACAAACAGAAGTGCCCGT
AAAAGATAAATGAATTACCCGGTGGGACCCATCGGATTGCAAGTGTGACT
ATAACGGCTATGACCGTGATGTAGGACATGGAGAGTGAAGGGTACAACGG
ACCCCACAAGGTCGCCAAGGTTCTAGCCGAGTCTCAAGGTGACAAAAGGG
ACATCCGGGTTCTGGACGTGGCAGCGGGGACCGGACTCTGTGGGCAAGAG
GTACACCTGCATTGTATGCACGTTGTTTCCGTTCGGTACTGCTGACATTT
GTAAACCACACGTAGGGCATTTTGAATGGGAAATGTGTGAAAGTAATTGG
CCGCGCCATTTCTCTTGCAACAAACATTCCCTTCATCTTCAGGTTTGCTA
TACACTTTTCGGTATCAACTTGTTTTTACAAAGTTTTCCTGATTTCGTTT
CAGTTGTCCAAGCTTGGTTTCTCTAACGTAGACGCCCTAGACGCTAGTCA
GGACATGTTGGATGTTGCCAAGACCAAGAACGTCTATAAGAATTTCATCA
AGGAATTTCTGGGACCGAACCGACTTGGCATTGATGATGGTAAATAAAAT
ACGGTAGTATCTTAGTCCTCGCTTTGTTATCCACTCCTAGAAAAACTTCA
GGAGACGTACAGGTAATAAGGAAATGCAATAAAGGGTTGAAGGCAAAGCA
TCTGTCACTGTACATCACTCCAATCCAACTGAACGTTTTGTTTAACACAG
TGTCAAGGAAGAAATTGACATGAAAGAAAAAACGCGATAGAGTTTTAAAA
AAATGACTGGCGCTGATTTATATTTGTATCCTTCACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACAAACACACAAACACACAAACACACACAAACACACAAACACACACACAC
ACACGAACACGCGCACACGCACACGCACACACGCACACACGCACACGCAC
ACACGCACACGCGCACACGCACACACGCACACACACACACGTACAGACAC
ACACACACGTGTTTGTTTATTTGTTTATTTTGTTTTTTCTTTGTAGACAC
CTATGATGCGGTAATTGGCAGTGGTCTGTTTGCTACCGGTCACGTCAAAC
CGGACTGTTTGGAAGAACTTATCCGAGTTGTCAAACCTGGTGAGTGTATC
TGTCGTAAGATATTACTTTCTTCTCTATGAACTTTTAGAAATATGCTGGC
GTGTTTATGACGGTAGCAAAGTTGTTAAAACATCGTACTTATTGGTCTAC
GTTCCAGTTTTCACTTCATGTGTTTTTTTCTCGAAATCTGAAAGGTGGAG
TTATTTGCCTAAACATCGGAGAAGAACGCCTGCGAACTAATGAGGATTGC
AAAGATCTAGAATCTCGCATGGCGGCGCTGCAGAGCAAAAGCATGTGGCA
GCAGGTGTCCCGGGAGATTTTTCCCGGTTACACCTTTGGAAGTGATGGCG
TAGTCTACCTCTACAAAGTGGTGTAAGATTAAATATTGTGTAGAGAATTG
AGAGAAAACGAAATAAAAGTGTTTGTTTTTTTACAACATGTCCTATCGAC
AATTTCGAAATGGCCAAGTCGTGTGAAAATAACCTGGCATCACTAGATAA
ATGTAAAGACACATGCATTCAGAAATGCATGCTATTGATAAACATCTAGA
TAGATAGATGCGAACCGAATGTACACGATTTCCCAACACCAACACATCAC
CAAATATGATCTGACCTGACCCGTATAGAAGACAATTTTACATATACTAG
CTACTGAATGGCAAGTATGTACAGCCGGAGGTGGTAGCTAGTCGACAAAC
AAGTATTACTAATATTTCAATGCCCTGTCTTCACATTATGCACACAAATG
TACGTCTTATTTACTCATTTCAAGACAAACGCCTGTTACATCCGGATCTT
AAAGGCGTCTTGTGTTTAGTAAATTGACAGGTCTATACATGATGTACGTC
ATTGAAACTGACTTGAAATTAAGTATTTACTTACCAATCAAAGCAGGGTC
TTTAATATGAATGTTCTTGCGTAATACTTGGGCAAGCTCGGGCACGTTTC
TTTGCGATGCCTTTCTTTTGAAACTAAAGACGTGTTATTATCTTGAATAT
CAGCAACACTTTTCTATATATTACTGCTATCATAAAGGTAAATTATCATA
ATGCTAGCCTTACATGCATTGAATATGCTATCCAATGGAGAATGTAAAAT
ATTGAATATACATTGTTTAAAACTAACTGATATTTCAACTCATAAATGAT
CTTTGTCAGATACATCTATTTCATGCCGTGGCTGGCATTAGTGACAAAAT
TGTATAATATAAGTTGTTTTGATTGAGATTTTGAATAGTACTAGTTGTTT
AAATTTAAGTTAGATTTTGTTGAATGTAATACATGTACGCCTAAAGTACG
CAATTCAGCATCCTCTGCTGAGGACGCTGCCATGTATTTCAGTAATGAAT
GAATG Coding sequence (CDS) from alignment at Sc0000152:472128..475232- >transcript:BL96562_cuf3 ID=transcript:BL96562_cuf3|Name=transcript:BL96562_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=3195bp|location=Sequence derived from alignment at Sc0000152:472128..475232- (Branchiostoma lanceolatum)
TCGGTCTCAGTTTATGAGAGGGTTTCTCAAATAACCCGTCCAGGAATTAA
GACGGATGAAGTGATAGACATGTATAAGGCGTGGGCTAAGGTGTATGACA
AGGACATGGAGAGTGAAGGGTACAACGGACCCCACAAGGTCGCCAAGGTT
CTAGCCGAGTCTCAAGGTGACAAAAGGGACATCCGGGTTCTGGACGTGGC
AGCGGGGACCGGACTCTGTGGGCAAGAGTTGTCCAAGCTTGGTTTCTCTA
ACGTAGACGCCCTAGACGCTAGTCAGGACATGTTGGATGTTGCCAAGACC
AAGAACGTCTATAAGAATTTCATCAAGGAATTTCTGGGACCGAACCGACT
TGGCATTGATGATGACACCTATGATGCGGTAATTGGCAGTGGTCTGTTTG
CTACCGGTCACGTCAAACCGGACTGTTTGGAAGAACTTATCCGAGTTGTC
AAACCTGGTGGAGTTATTTGCCTAAACATCGGAGAAGAACGCCTGCGAAC
TAATGAGGATTGCAAAGATCTAGAATCTCGCATGGCGGCGCTGCAGAGCA
AAAGCATGTGGCAGCAGGTGTCCCGGGAGATTTTTCCCGGTTACACCTTT
GGAAGTGATGGCGTAGTCTACCTCTACAAAGTGGTGTAATCGGTCTCAGT
TTATGAGAGGGTTTCTCAAATAACCCGTCCAGGAATTAAGACGGATGAAG
TGATAGACATGTATAAGGCGTGGGCTAAGGTGTATGACAAGGACATGGAG
AGTGAAGGGTACAACGGACCCCACAAGGTCGCCAAGGTTCTAGCCGAGTC
TCAAGGTGACAAAAGGGACATCCGGGTTCTGGACGTGGCAGCGGGGACCG
GACTCTGTGGGCAAGAGTTGTCCAAGCTTGGTTTCTCTAACGTAGACGCC
CTAGACGCTAGTCAGGACATGTTGGATGTTGCCAAGACCAAGAACGTCTA
TAAGAATTTCATCAAGGAATTTCTGGGACCGAACCGACTTGGCATTGATG
ATGACACCTATGATGCGGTAATTGGCAGTGGTCTGTTTGCTACCGGTCAC
GTCAAACCGGACTGTTTGGAAGAACTTATCCGAGTTGTCAAACCTGGTGG
AGTTATTTGCCTAAACATCGGAGAAGAACGCCTGCGAACTAATGAGGATT
GCAAAGATCTAGAATCTCGCATGGCGGCGCTGCAGAGCAAAAGCATGTGG
CAGCAGGTGTCCCGGGAGATTTTTCCCGGTTACACCTTTGGAAGTGATGG
CGTAGTCTACCTCTACAAAGTGGTGTAATCGGTCTCAGTTTATGAGAGGG
TTTCTCAAATAACCCGTCCAGGAATTAAGACGGATGAAGTGATAGACATG
TATAAGGCGTGGGCTAAGGTGTATGACAAGGACATGGAGAGTGAAGGGTA
CAACGGACCCCACAAGGTCGCCAAGGTTCTAGCCGAGTCTCAAGGTGACA
AAAGGGACATCCGGGTTCTGGACGTGGCAGCGGGGACCGGACTCTGTGGG
CAAGAGTTGTCCAAGCTTGGTTTCTCTAACGTAGACGCCCTAGACGCTAG
TCAGGACATGTTGGATGTTGCCAAGACCAAGAACGTCTATAAGAATTTCA
TCAAGGAATTTCTGGGACCGAACCGACTTGGCATTGATGATGACACCTAT
GATGCGGTAATTGGCAGTGGTCTGTTTGCTACCGGTCACGTCAAACCGGA
CTGTTTGGAAGAACTTATCCGAGTTGTCAAACCTGGTGGAGTTATTTGCC
TAAACATCGGAGAAGAACGCCTGCGAACTAATGAGGATTGCAAAGATCTA
GAATCTCGCATGGCGGCGCTGCAGAGCAAAAGCATGTGGCAGCAGGTGTC
CCGGGAGATTTTTCCCGGTTACACCTTTGGAAGTGATGGCGTAGTCTACC
TCTACAAAGTGGTGTAATCGGTCTCAGTTTATGAGAGGGTTTCTCAAATA
ACCCGTCCAGGAATTAAGACGGATGAAGTGATAGACATGTATAAGGCGTG
GGCTAAGGTGTATGACAAGGACATGGAGAGTGAAGGGTACAACGGACCCC
ACAAGGTCGCCAAGGTTCTAGCCGAGTCTCAAGGTGACAAAAGGGACATC
CGGGTTCTGGACGTGGCAGCGGGGACCGGACTCTGTGGGCAAGAGTTGTC
CAAGCTTGGTTTCTCTAACGTAGACGCCCTAGACGCTAGTCAGGACATGT
TGGATGTTGCCAAGACCAAGAACGTCTATAAGAATTTCATCAAGGAATTT
CTGGGACCGAACCGACTTGGCATTGATGATGACACCTATGATGCGGTAAT
TGGCAGTGGTCTGTTTGCTACCGGTCACGTCAAACCGGACTGTTTGGAAG
AACTTATCCGAGTTGTCAAACCTGGTGGAGTTATTTGCCTAAACATCGGA
GAAGAACGCCTGCGAACTAATGAGGATTGCAAAGATCTAGAATCTCGCAT
GGCGGCGCTGCAGAGCAAAAGCATGTGGCAGCAGGTGTCCCGGGAGATTT
TTCCCGGTTACACCTTTGGAAGTGATGGCGTAGTCTACCTCTACAAAGTG
GTGTAATCGGTCTCAGTTTATGAGAGGGTTTCTCAAATAACCCGTCCAGG
AATTAAGACGGATGAAGTGATAGACATGTATAAGGCGTGGGCTAAGGTGT
ATGACAAGGACATGGAGAGTGAAGGGTACAACGGACCCCACAAGGTCGCC
AAGGTTCTAGCCGAGTCTCAAGGTGACAAAAGGGACATCCGGGTTCTGGA
CGTGGCAGCGGGGACCGGACTCTGTGGGCAAGAGTTGTCCAAGCTTGGTT
TCTCTAACGTAGACGCCCTAGACGCTAGTCAGGACATGTTGGATGTTGCC
AAGACCAAGAACGTCTATAAGAATTTCATCAAGGAATTTCTGGGACCGAA
CCGACTTGGCATTGATGATGACACCTATGATGCGGTAATTGGCAGTGGTC
TGTTTGCTACCGGTCACGTCAAACCGGACTGTTTGGAAGAACTTATCCGA
GTTGTCAAACCTGGTGGAGTTATTTGCCTAAACATCGGAGAAGAACGCCT
GCGAACTAATGAGGATTGCAAAGATCTAGAATCTCGCATGGCGGCGCTGC
AGAGCAAAAGCATGTGGCAGCAGGTGTCCCGGGAGATTTTTCCCGGTTAC
ACCTTTGGAAGTGATGGCGTAGTCTACCTCTACAAAGTGGTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000152 | genome | Sc0000152:472128..475232 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96562_cuf3 |
| Biotype | protein_coding |
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