|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96555_cuf0 >transcript:BL96555_cuf0-protein ID=transcript:BL96555_cuf0-protein|Name=transcript:BL96555_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=186bp
MMWLLLLLFLAAGASDAGDCNSSPCLNDANCWDIGIEGYMCECRLGYDGP
RCENYNDPCQAGNNPCQNGGTCLYDNWVGYPYCQCPPDFTGKECETLFPT
SCDDSSCQNGGTCTRMPCDWPGCTAVEESWCTCAAGFTGYTCEFLFGICD
DSSCFNSGVCEQVPFESYYKCTCPPGTSGTRCETSG Run BLAST on NCBI mRNA from alignment at Sc0000102:783213..786804- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96555_cuf0 ID=transcript:BL96555_cuf0|Name=transcript:BL96555_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3592bp|location=Sequence derived from alignment at Sc0000102:783213..786804- (Branchiostoma lanceolatum)
TCCGCACTGACGCACATGCAAGGCTCCTCCCACCACGATCTATAAAGCCA
GCGTGCCACCGCCAGTCTTTTCTCTAGTAGATTAAGACTTCATCATGATG
TGGCTTCTTCTTCTCCTCTTTCTTGCAGCTGGCGCTAGTGGTAAGTCACT
GCCCTTTTCTAACTTTTTAAGCAACGCCTCAGGGCCAAGCCTGATGAGAT
AGTATTGCGTTCAGGCTGCAAGAATTACAAAAGTTCGATAGACATGTAAT
TTTGTTTTGCTTCCGGCGGTGGCAAAAAATTATTGTTTTAGCCCATGGAT
ACTGCCTTGCCATCGGTAGGTCTGCTTGGAGATTATGTTCAGGCTGCATA
AACGTAATTCGGGAGAACCCTATTTGTGTAAGGGGTTAGGGGTGTCGTGC
GGTGTTGTTTCAGACTTGTGCGGACGGTCGAGAAAATGGTGATTTTGCTC
AAGTCGTCAGTCATTTTCCGTAAATACGCAACTCTGTGTGGTTTCTGTAG
ATAGATAGTAATGGTCTCTTTGGAACTTTGATACGATTGACGGAATCTAG
AACTTATTGAACTTAGAAATATTACGACTGTAAACAAAGCTTGAGCCGAG
AGGCCGTCCAAATGAGCAAGCACCTAGGCCTTAAGAAAAGTATCGACATT
TTATGGTAGACCTCAGTAGTAGTCAGTACAGTTAAATAGTTTTAGATCAT
AAAAGTAAACTGTTTGTCTTCTATGACACATGATAGCGTTCAGCTGAGTG
TTCATATGCTCTATGTCAACAATAGCAACATAATGTACATCTCCCAGCCT
TATTGTTTCAGAAATATTTACTCCACACTAACGTAAACAAATGCTATAGG
TATAGCGTAATAGCGCTAATAATAATTTGCAAAATATCACAGGGTTAGTA
CACATTCCTGTAAAACATAACATCAGGGTAAACCTAGAATTTTCCCAGGT
GATAGTTGTGCCTTAGTTGTCATTTGTACTCGCTTGTTGTCGTTAGTTAA
TTAGTCGACAGGATACAACCGGGTACTATACAGAGATATCAAAGTGAACG
TTTCTGAAATCTACATGTTTTTTTCATTCCCTTGAGGCGGAGTTGGTTTA
CTTGTCTCTTTTTCCTATAATGATTTTATCTTTCCACTCATCATCTTCCT
GTCTTCCCAGACGCTGGGGACTGCAATAGCAGCCCCTGTCTGAACGACGC
CAACTGCTGGGACATCGGTATCGAAGGGTACATGTGCGAGTGCCGGCTGG
GCTATGACGGTCCCCGGTGCGAGAACTACAACGATCCCTGCCAGGCCGGT
AACAACCCTTGTCAGAACGGCGGCACGTGCCTGTACGACAACTGGGTCGG
TTACCCATACTGCCAGTGCCCTCCAGACTTCACCGGTATGCCATAAATTC
AGAGACAAGATACTTCTCAGTTAACCGCTTAGCAGTCGCTTCTTGGAATT
GTCACATTCGATTTGTAAGTATTCTGTGCAAAAATACTGGATTCGTATAA
AATTAGGAAGCAAAAATTTGAGGGATATTCAGACCTAGAATGGGATACTA
TTCTTTCTATACCATTTTTTTTTCTCCGAAGAAAAACAGCACCAGCTATA
GGCTCCAGGAGAAGTGACATAAGTTTTGGCCCTTTAGCAGCTTTCTTTGG
AACTGCAGGGGGTGCTTCAGCTGAAAACTTTGAAAGAGGATAAGTCAAGA
AGGAATGATCGTATTCTAAATTCTTTTTAATGGAATCAACATGAGATGGA
TATAACGACGTTCTTTGTACACAACAAAGAGTTTTATTCAACACCGACGT
TTCTGTGACCACCTGTCACCTTCCTCGTGGCCAACGGTTTGTCTCCTTTC
AGGCAAGGAGTGTGAAACCCTGTTTCCAACCAGCTGTGACGACAGCAGCT
GCCAGAACGGAGGCACCTGTACGAGGATGCCGTGTGATTGGCCCGGCTGT
ACCGCCGTCGAGGAGTCATGGTGCACCTGCCTCGCGGGTTTNGCCAGAAC
GGAGGCACCTGTACGAGGATGCCGTGTGATTGGCCCGGCTGTACCGCTGT
CGAGGAGTCATGGTGCACCTGCGCCGCGGGTTTCACCGGCTACACCTGCG
AGTTCCTCTTCGGCATCTGCGACGACAGTAGCTGCTTCAACAGCGGGGTG
TGCGAGCAGGTCCCGTTTGAGAGCTACTACAAGTGCACCTGCCCACCAGG
TGAGAAAATCAAGCTTCTTTTTTTCTTCATTTGTTCAAACTATCATCATA
GTCCATTTTTTTGCCTAATATCATTGTTTCAAGTACATATATATTGTTAC
TTCTACCAAATATGGCATACTAGTACCTATGTTACGAGTATAACATGGGC
TTATCATAGGTTTGAACAACCCGAGCCTCACTTTGGTGCATGACCCTCAA
GTCACCCCGGGAAATTCAAAATGGCCCCCGGGAAATTCAAAATGGCCGCC
GTAATTGGAAATAGGTCTATTGCTATTACTGGCACGGTTACAATCGTTAC
CATTGTTTTGCAGGTACATCTGGGACAAGGTGTGAGACTAGTGGCTAGTG
TTCACCTACACTTAGTACAAGGTAAGTTATAAGTTATCTTCTCTGAGGCG
ACCAGAACGCACATTAGATAGAGTTACTACATTGACAACACCTAGCTAAC
TGACTGTAAAAAACCGACGACAACAACATGAAGGAAACGGGAAGGGGGGT
GACGTAGCGGTAAAAAGATAGTGCGCCCTAAATCTTGAACCGTATGTAAA
AACGTTGACATGAAAGCCAGCGAGGCACAAACTTTACTGTATGGCAATAT
AATAAGTGGTCTTTTGGATCGTACGAATGAGATCGTGAAGTTTTCCCATT
CGGCGTATAAATGCGCGTGACCTTTGCAGCTGCCTGTCGAGGTGAGTCGG
CTGCAGTTCCGTATGGTCCCGCATGACCCCATATCAAAGTGGCCGTCAAA
TTTTAAAAAACCATAACTTTTTCTTTGGGTTTTCAGTTATTTTGTACATT
GTACTCTCGACTTCAACATATTTGTTTGTCGTGATTTTGTAGGGTACCCT
ACTATGATTTTATCCACGTCGATGTCGGACTGCGCATGCGTATCCCTTGT
ATGGTAGCTCTGCGGCACGTCCGGAACAGCTGAATAGTTGCAAGTCCATA
TATTTCCGCTAGATTGCCTTGAATGCTCGCGTTCACTGTTCTTCTAATCT
TACAGCGTTTTCCCTGAAATTCTCTGTGTTTCAGAACGCGTCGGCTCGTC
TTATCAAGAAGACTGAAGATGGCACAGATGATGTTCTAATAATCTCACGC
TAGAAGCCTACGTGTTTAAGATTGTACGTCATGTACTTAATGAATGGTGA
CCATGAAACAAGAACCTCGTATGCAAATATCAGGAGGAATGATTGTGAAA
ATTCATCGGCTGACACTACTGTCAAGCTTCTCTGGAGAATGGTACGATAA
AAACCGGTGAACCGCCATAATCATTCCTCCCGATAAGCATTGGGGATTCC
TTTTTGCTCTTTTTTCTTAGATTAGGAAGCAGGTTATCTATGTAGTACTA
GTATTACGGAAACATTGCCGTATAATAAAAGTGTTGGCAAAG Coding sequence (CDS) from alignment at Sc0000102:783213..786804- >transcript:BL96555_cuf0 ID=transcript:BL96555_cuf0|Name=transcript:BL96555_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2805bp|location=Sequence derived from alignment at Sc0000102:783213..786804- (Branchiostoma lanceolatum)
ATGATGTGGCTTCTTCTTCTCCTCTTTCTTGCAGCTGGCGCTAGTGACGC
TGGGGACTGCAATAGCAGCCCCTGTCTGAACGACGCCAACTGCTGGGACA
TCGGTATCGAAGGGTACATGTGCGAGTGCCGGCTGGGCTATGACGGTCCC
CGGTGCGAGAACTACAACGATCCCTGCCAGGCCGGTAACAACCCTTGTCA
GAACGGCGGCACGTGCCTGTACGACAACTGGGTCGGTTACCCATACTGCC
AGTGCCCTCCAGACTTCACCGGCAAGGAGTGTGAAACCCTGTTTCCAACC
AGCTGTGACGACAGCAGCTGCCAGAACGGAGGCACCTGTACGAGGATGCC
GTGTGATTGGCCCGGCTGTACCGCTGTCGAGGAGTCATGGTGCACCTGCG
CCGCGGGTTTCACCGGCTACACCTGCGAGTTCCTCTTCGGCATCTGCGAC
GACAGTAGCTGCTTCAACAGCGGGGTGTGCGAGCAGGTCCCGTTTGAGAG
CTACTACAAGTGCACCTGCCCACCAGGTACATCTGGGACAAGGTGTGAGA
CTAGTGGCTAGATGATGTGGCTTCTTCTTCTCCTCTTTCTTGCAGCTGGC
GCTAGTGACGCTGGGGACTGCAATAGCAGCCCCTGTCTGAACGACGCCAA
CTGCTGGGACATCGGTATCGAAGGGTACATGTGCGAGTGCCGGCTGGGCT
ATGACGGTCCCCGGTGCGAGAACTACAACGATCCCTGCCAGGCCGGTAAC
AACCCTTGTCAGAACGGCGGCACGTGCCTGTACGACAACTGGGTCGGTTA
CCCATACTGCCAGTGCCCTCCAGACTTCACCGGCAAGGAGTGTGAAACCC
TGTTTCCAACCAGCTGTGACGACAGCAGCTGCCAGAACGGAGGCACCTGT
ACGAGGATGCCGTGTGATTGGCCCGGCTGTACCGCTGTCGAGGAGTCATG
GTGCACCTGCGCCGCGGGTTTCACCGGCTACACCTGCGAGTTCCTCTTCG
GCATCTGCGACGACAGTAGCTGCTTCAACAGCGGGGTGTGCGAGCAGGTC
CCGTTTGAGAGCTACTACAAGTGCACCTGCCCACCAGGTACATCTGGGAC
AAGGTGTGAGACTAGTGGCTAGATGATGTGGCTTCTTCTTCTCCTCTTTC
TTGCAGCTGGCGCTAGTGACGCTGGGGACTGCAATAGCAGCCCCTGTCTG
AACGACGCCAACTGCTGGGACATCGGTATCGAAGGGTACATGTGCGAGTG
CCGGCTGGGCTATGACGGTCCCCGGTGCGAGAACTACAACGATCCCTGCC
AGGCCGGTAACAACCCTTGTCAGAACGGCGGCACGTGCCTGTACGACAAC
TGGGTCGGTTACCCATACTGCCAGTGCCCTCCAGACTTCACCGGCAAGGA
GTGTGAAACCCTGTTTCCAACCAGCTGTGACGACAGCAGCTGCCAGAACG
GAGGCACCTGTACGAGGATGCCGTGTGATTGGCCCGGCTGTACCGCTGTC
GAGGAGTCATGGTGCACCTGCGCCGCGGGTTTCACCGGCTACACCTGCGA
GTTCCTCTTCGGCATCTGCGACGACAGTAGCTGCTTCAACAGCGGGGTGT
GCGAGCAGGTCCCGTTTGAGAGCTACTACAAGTGCACCTGCCCACCAGGT
ACATCTGGGACAAGGTGTGAGACTAGTGGCTAGATGATGTGGCTTCTTCT
TCTCCTCTTTCTTGCAGCTGGCGCTAGTGACGCTGGGGACTGCAATAGCA
GCCCCTGTCTGAACGACGCCAACTGCTGGGACATCGGTATCGAAGGGTAC
ATGTGCGAGTGCCGGCTGGGCTATGACGGTCCCCGGTGCGAGAACTACAA
CGATCCCTGCCAGGCCGGTAACAACCCTTGTCAGAACGGCGGCACGTGCC
TGTACGACAACTGGGTCGGTTACCCATACTGCCAGTGCCCTCCAGACTTC
ACCGGCAAGGAGTGTGAAACCCTGTTTCCAACCAGCTGTGACGACAGCAG
CTGCCAGAACGGAGGCACCTGTACGAGGATGCCGTGTGATTGGCCCGGCT
GTACCGCTGTCGAGGAGTCATGGTGCACCTGCGCCGCGGGTTTCACCGGC
TACACCTGCGAGTTCCTCTTCGGCATCTGCGACGACAGTAGCTGCTTCAA
CAGCGGGGTGTGCGAGCAGGTCCCGTTTGAGAGCTACTACAAGTGCACCT
GCCCACCAGGTACATCTGGGACAAGGTGTGAGACTAGTGGCTAGATGATG
TGGCTTCTTCTTCTCCTCTTTCTTGCAGCTGGCGCTAGTGACGCTGGGGA
CTGCAATAGCAGCCCCTGTCTGAACGACGCCAACTGCTGGGACATCGGTA
TCGAAGGGTACATGTGCGAGTGCCGGCTGGGCTATGACGGTCCCCGGTGC
GAGAACTACAACGATCCCTGCCAGGCCGGTAACAACCCTTGTCAGAACGG
CGGCACGTGCCTGTACGACAACTGGGTCGGTTACCCATACTGCCAGTGCC
CTCCAGACTTCACCGGCAAGGAGTGTGAAACCCTGTTTCCAACCAGCTGT
GACGACAGCAGCTGCCAGAACGGAGGCACCTGTACGAGGATGCCGTGTGA
TTGGCCCGGCTGTACCGCTGTCGAGGAGTCATGGTGCACCTGCGCCGCGG
GTTTCACCGGCTACACCTGCGAGTTCCTCTTCGGCATCTGCGACGACAGT
AGCTGCTTCAACAGCGGGGTGTGCGAGCAGGTCCCGTTTGAGAGCTACTA
CAAGTGCACCTGCCCACCAGGTACATCTGGGACAAGGTGTGAGACTAGTG
GCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000102 | genome | Sc0000102:783213..786804 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96555_cuf0 |
| Biotype | protein_coding |
|
