transcript:BL96552_cuf10 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96552_cuf10
Unique Nametranscript:BL96552_cuf10
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96552_cuf10

>transcript:BL96552_cuf10-protein ID=transcript:BL96552_cuf10-protein|Name=transcript:BL96552_cuf10|organism=Branchiostoma lanceolatum|type=polypeptide|length=243bp
PVQLHVAWRRPDHIHGQLQAYRVSLYNSTGGEPFYQENMTSGLQQENLTA
VVTSSHLQPAHNYSVTVSAINTLYKGNESHPYVASTSDGCPNAADVTKST
NSECGVTWTAPAETRGRLSGYMVTYADTPLHNPDASEPGVGFDMLGWDEH
QWSKSLADLPANSLVRVTVRAKTCADGDKGEEFTCQVSRVEPPPIPVLPT
GPPPNPSDTSFPMVLPKVSERNGPIRYVQHRFYDEEHYFVSIL
Run BLAST on NCBI

mRNA from alignment at Sc0000009:296888..298457-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96552_cuf10 ID=transcript:BL96552_cuf10|Name=transcript:BL96552_cuf10|organism=Branchiostoma lanceolatum|type=mRNA|length=1570bp|location=Sequence derived from alignment at Sc0000009:296888..298457- (Branchiostoma lanceolatum)
GGCCGGTCCAGCTGCATGTAGCCTGGCGGCGCCCTGACCACATCCACGGT
CAGCTGCAGGCGTACCGAGTCAGCCTGTACAACAGTACCGGTGGGGAACC
GTTCTACCAGGAGAACATGACGTCAGGACTGCAGCAGGAGAACCTGACAG
CTGTGGTGACGTCATCACACCTGCAACCCGCTCACAACTACTCTGTAACG
GTGAGTTAAAACTGAGATCCTACCATCATCTTGCTTCCAACTCCCAGCTT
ACAAATGTTAGATGTTTACTGTAACGTGGACGACTGTAGAATTGCTGAGA
AAGCTTTCAAAAGATGTATCCACTAATGGCATGTTCTCAACATGAATGTA
TTGAATGAAACTGGAAATGTACCGCTTATCAATTATCTACATTGTGACGT
TTACATTGTATCTGGCAGGTATCAGCCATTAATACCTTGTACAAAGGAAA
TGAGAGCCATCCATACGTGGCCAGCACTAGTGACGGATGTACGTATGATT
TTGTTTATTATGAAAATCATGCAAAATCAAAATCAACGATTTCTGATTTC
ATGATTTATGAATGATTCATGATTTCACTTGTAAAAGTGCACATAACCTT
TATCGAACACATCAATCTTTGTTAACTATTCAAATTATATCATGCTTTTC
ACTCACAACTACCAAATATTATAATGATCCATCCACAGCCTCTAAAGTTA
TGCTGTCCACATGTACACACAAGACACCTAAAACATATTGCTTTTTGACT
AAGCTAATTGTTTCTCTTCTTCCTTAGGTCCAAATGCTGCAGATGTGACA
AAAAGTACAAACAGTGAATGTGGAGTAACCTGGACAGCTCCTGCAGAAAC
CAGAGGGAGGCTGTCAGGGTACATGGTAATTACACATTAATTTCGAATAC
AAGATAACAAAAACCTAGTTTTCTCCTTTTATATAATTAGGTGTTTGAAG
ACTGACGTGAATTTTAATGCATGATTTATTCCGAACAGGTAACATATGCA
GACACACCACTTCATAATCCGGACGCGTCTGAACCAGGCGTCGGCTTTGA
CATGTTGGGTTGGGATGAACACCAGTGGTCCAAGTCACTGGCTGACCTCC
CCGCCAACTCCCTGGTCCGAGTCACAGTTCGTGCAAAAACCTGTGCCGAT
GGAGACAAGGGAGAAGAGTTCACTTGTCAAGTGTCAAGAGTTGGTGAGAA
GTAGTCCTACTACGAACACACATCAATTTAATATTTCAGTTAGATGTATT
CGAGAAACCTCGTCGCTTGTGAAGCGATTGTAGTAAAGAAAGGGTTAACT
TGACCTCACCTATATTTTGTCAATCACACATCTGCTAGTGACAACTGTAA
CCCATGGAAATGCCGAAGTTTTCATTTGAAGTCACTTTTTTTTGTCTCTA
CAAATGTAGAGCCACCGCCGATTCCTGTACTTCCAACCGGCCCACCCCCA
AACCCTTCAGATACATCTTTCCCAATGGTCCTCCCGAAAGTGAGCGAGAG
GAATGGACCCATACGGTACGTTCAACATCGTTTTTATGATGAGGAACATT
ATTTTGTCTCCATTCTTTAA

Coding sequence (CDS) from alignment at Sc0000009:296888..298457-

>transcript:BL96552_cuf10 ID=transcript:BL96552_cuf10|Name=transcript:BL96552_cuf10|organism=Branchiostoma lanceolatum|type=CDS|length=3660bp|location=Sequence derived from alignment at Sc0000009:296888..298457- (Branchiostoma lanceolatum)
CCGGTCCAGCTGCATGTAGCCTGGCGGCGCCCTGACCACATCCACGGTCA
GCTGCAGGCGTACCGAGTCAGCCTGTACAACAGTACCGGTGGGGAACCGT
TCTACCAGGAGAACATGACGTCAGGACTGCAGCAGGAGAACCTGACAGCT
GTGGTGACGTCATCACACCTGCAACCCGCTCACAACTACTCTGTAACGGT
ATCAGCCATTAATACCTTGTACAAAGGAAATGAGAGCCATCCATACGTGG
CCAGCACTAGTGACGGATGTCCAAATGCTGCAGATGTGACAAAAAGTACA
AACAGTGAATGTGGAGTAACCTGGACAGCTCCTGCAGAAACCAGAGGGAG
GCTGTCAGGGTACATGGTAACATATGCAGACACACCACTTCATAATCCGG
ACGCGTCTGAACCAGGCGTCGGCTTTGACATGTTGGGTTGGGATGAACAC
CAGTGGTCCAAGTCACTGGCTGACCTCCCCGCCAACTCCCTGGTCCGAGT
CACAGTTCGTGCAAAAACCTGTGCCGATGGAGACAAGGGAGAAGAGTTCA
CTTGTCAAGTGTCAAGAGTTGAGCCACCGCCGATTCCTGTACTTCCAACC
GGCCCACCCCCAAACCCTTCAGATACATCTTTCCCAATGGTCCTCCCGAA
AGTGAGCGAGAGGAATGGACCCATACGGTACGTTCAACATCGTTTTTATG
ATGAGGAACATTATTTTGTCTCCATTCTTTAACCGGTCCAGCTGCATGTA
GCCTGGCGGCGCCCTGACCACATCCACGGTCAGCTGCAGGCGTACCGAGT
CAGCCTGTACAACAGTACCGGTGGGGAACCGTTCTACCAGGAGAACATGA
CGTCAGGACTGCAGCAGGAGAACCTGACAGCTGTGGTGACGTCATCACAC
CTGCAACCCGCTCACAACTACTCTGTAACGGTATCAGCCATTAATACCTT
GTACAAAGGAAATGAGAGCCATCCATACGTGGCCAGCACTAGTGACGGAT
GTCCAAATGCTGCAGATGTGACAAAAAGTACAAACAGTGAATGTGGAGTA
ACCTGGACAGCTCCTGCAGAAACCAGAGGGAGGCTGTCAGGGTACATGGT
AACATATGCAGACACACCACTTCATAATCCGGACGCGTCTGAACCAGGCG
TCGGCTTTGACATGTTGGGTTGGGATGAACACCAGTGGTCCAAGTCACTG
GCTGACCTCCCCGCCAACTCCCTGGTCCGAGTCACAGTTCGTGCAAAAAC
CTGTGCCGATGGAGACAAGGGAGAAGAGTTCACTTGTCAAGTGTCAAGAG
TTGAGCCACCGCCGATTCCTGTACTTCCAACCGGCCCACCCCCAAACCCT
TCAGATACATCTTTCCCAATGGTCCTCCCGAAAGTGAGCGAGAGGAATGG
ACCCATACGGTACGTTCAACATCGTTTTTATGATGAGGAACATTATTTTG
TCTCCATTCTTTAACCGGTCCAGCTGCATGTAGCCTGGCGGCGCCCTGAC
CACATCCACGGTCAGCTGCAGGCGTACCGAGTCAGCCTGTACAACAGTAC
CGGTGGGGAACCGTTCTACCAGGAGAACATGACGTCAGGACTGCAGCAGG
AGAACCTGACAGCTGTGGTGACGTCATCACACCTGCAACCCGCTCACAAC
TACTCTGTAACGGTATCAGCCATTAATACCTTGTACAAAGGAAATGAGAG
CCATCCATACGTGGCCAGCACTAGTGACGGATGTCCAAATGCTGCAGATG
TGACAAAAAGTACAAACAGTGAATGTGGAGTAACCTGGACAGCTCCTGCA
GAAACCAGAGGGAGGCTGTCAGGGTACATGGTAACATATGCAGACACACC
ACTTCATAATCCGGACGCGTCTGAACCAGGCGTCGGCTTTGACATGTTGG
GTTGGGATGAACACCAGTGGTCCAAGTCACTGGCTGACCTCCCCGCCAAC
TCCCTGGTCCGAGTCACAGTTCGTGCAAAAACCTGTGCCGATGGAGACAA
GGGAGAAGAGTTCACTTGTCAAGTGTCAAGAGTTGAGCCACCGCCGATTC
CTGTACTTCCAACCGGCCCACCCCCAAACCCTTCAGATACATCTTTCCCA
ATGGTCCTCCCGAAAGTGAGCGAGAGGAATGGACCCATACGGTACGTTCA
ACATCGTTTTTATGATGAGGAACATTATTTTGTCTCCATTCTTTAACCGG
TCCAGCTGCATGTAGCCTGGCGGCGCCCTGACCACATCCACGGTCAGCTG
CAGGCGTACCGAGTCAGCCTGTACAACAGTACCGGTGGGGAACCGTTCTA
CCAGGAGAACATGACGTCAGGACTGCAGCAGGAGAACCTGACAGCTGTGG
TGACGTCATCACACCTGCAACCCGCTCACAACTACTCTGTAACGGTATCA
GCCATTAATACCTTGTACAAAGGAAATGAGAGCCATCCATACGTGGCCAG
CACTAGTGACGGATGTCCAAATGCTGCAGATGTGACAAAAAGTACAAACA
GTGAATGTGGAGTAACCTGGACAGCTCCTGCAGAAACCAGAGGGAGGCTG
TCAGGGTACATGGTAACATATGCAGACACACCACTTCATAATCCGGACGC
GTCTGAACCAGGCGTCGGCTTTGACATGTTGGGTTGGGATGAACACCAGT
GGTCCAAGTCACTGGCTGACCTCCCCGCCAACTCCCTGGTCCGAGTCACA
GTTCGTGCAAAAACCTGTGCCGATGGAGACAAGGGAGAAGAGTTCACTTG
TCAAGTGTCAAGAGTTGAGCCACCGCCGATTCCTGTACTTCCAACCGGCC
CACCCCCAAACCCTTCAGATACATCTTTCCCAATGGTCCTCCCGAAAGTG
AGCGAGAGGAATGGACCCATACGGTACGTTCAACATCGTTTTTATGATGA
GGAACATTATTTTGTCTCCATTCTTTAACCGGTCCAGCTGCATGTAGCCT
GGCGGCGCCCTGACCACATCCACGGTCAGCTGCAGGCGTACCGAGTCAGC
CTGTACAACAGTACCGGTGGGGAACCGTTCTACCAGGAGAACATGACGTC
AGGACTGCAGCAGGAGAACCTGACAGCTGTGGTGACGTCATCACACCTGC
AACCCGCTCACAACTACTCTGTAACGGTATCAGCCATTAATACCTTGTAC
AAAGGAAATGAGAGCCATCCATACGTGGCCAGCACTAGTGACGGATGTCC
AAATGCTGCAGATGTGACAAAAAGTACAAACAGTGAATGTGGAGTAACCT
GGACAGCTCCTGCAGAAACCAGAGGGAGGCTGTCAGGGTACATGGTAACA
TATGCAGACACACCACTTCATAATCCGGACGCGTCTGAACCAGGCGTCGG
CTTTGACATGTTGGGTTGGGATGAACACCAGTGGTCCAAGTCACTGGCTG
ACCTCCCCGCCAACTCCCTGGTCCGAGTCACAGTTCGTGCAAAAACCTGT
GCCGATGGAGACAAGGGAGAAGAGTTCACTTGTCAAGTGTCAAGAGTTGA
GCCACCGCCGATTCCTGTACTTCCAACCGGCCCACCCCCAAACCCTTCAG
ATACATCTTTCCCAATGGTCCTCCCGAAAGTGAGCGAGAGGAATGGACCC
ATACGGTACGTTCAACATCGTTTTTATGATGAGGAACATTATTTTGTCTC
CATTCTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96552gene:BL96552Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96552_cuf10transcript:BL96552_cuf10-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96552_cuf10-E1BL96552_cuf10-E1-1564476830-88487Branchiostoma lanceolatumexon
BL96552_cuf10-E2BL96552_cuf10-E2-1564476830-88484Branchiostoma lanceolatumexon
BL96552_cuf10-E3BL96552_cuf10-E3-1564476830-88482Branchiostoma lanceolatumexon
BL96552_cuf10-E4BL96552_cuf10-E4-1564476830-88480Branchiostoma lanceolatumexon
BL96552_cuf10-E5BL96552_cuf10-E5-1564476830-88478Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000009genomeSc0000009:296888..298457 -
Properties
Property NameValue
Transcript idBL96552_cuf10
Biotypeprotein_coding