|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96549_cuf14 >transcript:BL96549_cuf14-protein ID=transcript:BL96549_cuf14-protein|Name=transcript:BL96549_cuf14|organism=Branchiostoma lanceolatum|type=polypeptide|length=162bp
TITEDEPPVKEAAENPSCTALDEDSSPYENTISSNADLVTVDDVVEFLRA
KGFGQYAAAFRKHEVDGEGAMSLTGDMLAELVPEIGPRAKLKKALEELKD
NPESAKSSSPVHSDWEIPRSSLTLGKILGKGQFGEVRIGELRKRGVTQTV
AVKTLKESAEER Run BLAST on NCBI mRNA from alignment at Sc0000009:337077..340730+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96549_cuf14 ID=transcript:BL96549_cuf14|Name=transcript:BL96549_cuf14|organism=Branchiostoma lanceolatum|type=mRNA|length=3654bp|location=Sequence derived from alignment at Sc0000009:337077..340730+ (Branchiostoma lanceolatum)
GACAATCACAGAAGACGAACCTCCCGTCAAGGAAGCAGCTGAGAATCCTT
CATGTACTGCACTGGATGAAGACAGTTCACCTTATGAAAACGTAACTATA
CAATCATGATTATTTAGTTGCATATTTTCGCTATTTGGATTTTAACTATT
CTAGTAGTGTAGTTGTTATTGTGATACTCTTTAGCCGACCACCAGGGTTT
ATACAGCTATGCATACAGACACAAATACACAACCAATTCAAAAGTCGATA
ATACATAAAGACTACATCAGAAAACCTAAAACCATTTCGTTTTCACAATC
TTGGTCACTGTCCGTGAATTTTCTGACATTGGTATCCACAGTCTTTATAT
CAGTCGGCAGATCATTACAAAGCTTCACAGCTCTATCTGTACACAAACGC
CTTCTTTCCACTGGTACTTTTTCTGGGTTTAGTAGCCAAAAAGTATACAT
CGACTGTTTCGTTGAGTATGTATGACGTTCATGAACTGGTACGATGTATT
TACTGATGCCCTCTGGCTCAAACGTAAAAGCAATTCTGAAAAATAGTTTC
GAAATACTCTTACGAGTCCACTGCTGCTCGTGTCTTATCAATGTAACTAC
CTAAGTGAGATGCGTAACGTTAATGTTCACTTTCTGGTGGTATATCACTT
CTTGTGTAAAACTTGATCTAAATGTGTCAGCAACTATGTTAACTACTGCA
GTAAAAGAACCCAACACACTTATCGAAAAGAGTAGGGGTGACCAGGCATG
TTTGGCTAAAAACACAAGCCGAAGCAANAAATAAATCCTCAAAGTCTATT
TACATAAAACGTGATAATTGTGTCACGATTGATAAGCACTATGTGCAATG
ACTGTGATCTTCCATGCTTATCGATCTTTTTGGGCAAAATCGTGACTGCT
CATGTCTAGACTCTAGATCTGATCACACCACCACGTACAGCCTTCAGTCG
AAAGATCTTGTTGGATATTACAATGACTTGCAAATCATTGATTTGTTAAA
GGAAAAGAAAAACCAACGATGACCAGAACCTTACAGGTCTGCAGATAGGC
CTGAAGACAATCACAGAAGACGAACCTCCCGCCAAGGAAGCAGCTGAGAA
TCCTTCATGCACTGCACTGGATGAAGACAGTTCACCTTATGAAAACGTAA
CTATACAATCATGATTATTTAGTTGCATATTTTCGCTATTTGGATTTTAA
CTATTCTAGTAGTGTAGTTGTTATTGTGATACTCTTTAGCCGACCACCAG
GGTTTATACAGCTATGCATACAGACACAAATACACAACCAATTCAAAAGT
CGATAATACATAAAGACTACATCAGAAAACCTAAAACCATTTCGTTTTCA
CAATCTTGGTCACTGTCCGTGAATTTTCTGACATTGGTATCCACAGTCTT
TATATCAGTCGGCAGATCATTACAAAGCTTCACAGCTCTATCTGTACACA
AACGCCTTCTTTCCACTGGTACTTTTTCTGGGTTTAGTAGCCAAAAAGTA
TACATCGACTGTTTCGTTGAGTATGTATGACGTTCATGAACTGGTACGAT
GTATTTACTGATGCCCTCTGGCTCAAACGTAAAAGCAATTCTGAAAAATA
GTTTCGAAATACTCTTACGAGTCCACTGCTGCTCGTGTCTTATCAATGTA
ACTACCTAAGTGAGATGCGTAACGTTAATGTTCACTTTCTGGTGGTATAT
CACTTCTTGTGTAAAACTTGATCTAAATGTGTCAGCAACTATGTTAACTA
CTGCAGTAAAAGAACCCAACACACTTATCGAAAAGAGTAGGGGTGACCAG
GCATGTTTGGCTAAAAACACAAGCCGAAGCAAAAACGCATAACACTACCA
TCAATATCTTGAAATGGCATCATGTTTCACCCCAGTTTACTACTTAAAAA
AAAACAACTTACTATTTGTCTACTGCAGACCATCTCCAGCAACGCAGACC
TTGTAACTGTGGACGACGTAGTGGAATTCCTGAGGGCCAAGGGCTTTGGG
CAGTATGCTGCAGCATTTAGGAGTAAGTTCAGTCCAGCTCACCATTTTCC
TTACCTCTATAAAAACTTTCTGTGGTGCTACAACTGCTACTGTAGCGCCG
TCTTCGATTTGAAGATTGAATCTCTGTCAACTAAGTTGATCTTAATATTA
AGACTAATCTGCAGAGCACGAAGTAGACGGAGAAGGAGCCATGTCCCTGA
CCGGCGATATGCTAGCTGAGCTCGTCCCTGAGATCGGACCGAGGGCAAAA
CTGAAGAAGGCCCTTGAAGAGCTGAAGGACAATCCGGTATGGCTAGCTCA
CTCAACTTGATCTAGAGAATTCATTGCTTTTCAACACGTGAGATCAAACC
TATATTGATTTAAACAATAACCATGATTAACATTATAGGTCGCGTCAGAA
ATGTTATTGACATTAACCTTTATTGACCCAACATTTTTGTGTGATTAAAA
CCCGAACGGGGTACAAACAGACCCCGTTATGTTTGTCCCATTAATATATT
ATATCATATTTATATTTTGCGGTGATCATTGTAGATTAATTGCTTCGCCA
ATGTCAGAGGGATACTTTGACATGTCTCCTGCTTATTTTCGTAATGCAAA
AAGATCAGAGTAGCCATAGTTTGCACTATTGGTACTAATTTTGTTTCCTA
AATTTTGCCCATTACAATTCTCACAAAATAATGATATGATAACCACAAAA
TGCAATATATTAGAATAATTGTGCTTTAAGGATATATGTTGAGGACAACC
AAAAATATCATGTTTTTAAAACTGCACATTTTTCAGGGGTCAAAATGAAC
CCCATTCTGACTCATCACAGACTTCCCTCTATAATTTCCACCGTACTATG
CCAATATCCATTAAACAATTCTACTTATAAAGTCGGCGAGGGTCTTTTTC
GGACCAAAAAGTTCAAATATAGCACTTAGATATATACGCCTGGGGTCTAA
ACTGACCCCGTTAGGGTATATTAGGGTTGAAGGACTATGAACTTGGGAAC
AAAAGGTCTTGTTTGGGATATACATATTTTTGATCCACCATAAAATGAGT
GGAATTGAGAAACACCTCCGGTCCCGTCTCATAGATAAGCTTTCTACAGC
ACAAGAAAACGACTGCTTACTTTACTACCCAGACATTTTCCCCACTATCA
CCTAATTTTCTAGGAGTCCGCTAAAAGCAGCAGTCCCGTTCACTCTGACT
GGGAAATCCCCCGCTCCAGTCTGACTCTCGGTAAAATCCTGGGGAAGGGG
CAGTTTGGGGAGGTCCGTATAGGGGAGCTGCGGAAGAGAGGTGTCACCCA
GACTGTGGCTGTCAAGACGCTGAAAGGTGCCGTTTATGTTTTGCACAGAT
TGGACAACTCGTGTCCTTAACATTCAGGAAAAAAAAAATTAGGAGAAAAA
AATTCTGGCATCAATAACCGCCCATCATACAGTGTTTAGAAAAACAAACC
ATAGTGATTGATAATCTGTTACCCATTATGCTTATTCTGTGTGTATGGTT
TGTTTTTCAAACACAATGTCATGTTCACAGCTCGCAAAATGGTCAGTTGA
TATCTATGGAAAATCCAATGAACGGTAGGCTAAGATGATTACTTCTTTCA
CTTTGGTCCTTTTTGTCGATTTATTGTTTTCCCAGAATCTGCAGAAGAAA
GGGA Coding sequence (CDS) from alignment at Sc0000009:337077..340730+ >transcript:BL96549_cuf14 ID=transcript:BL96549_cuf14|Name=transcript:BL96549_cuf14|organism=Branchiostoma lanceolatum|type=CDS|length=2430bp|location=Sequence derived from alignment at Sc0000009:337077..340730+ (Branchiostoma lanceolatum)
ACAATCACAGAAGACGAACCTCCCGTCAAGGAAGCAGCTGAGAATCCTTC
ATGTACTGCACTGGATGAAGACAGTTCACCTTATGAAAACACCATCTCCA
GCAACGCAGACCTTGTAACTGTGGACGACGTAGTGGAATTCCTGAGGGCC
AAGGGCTTTGGGCAGTATGCTGCAGCATTTAGGAAGCACGAAGTAGACGG
AGAAGGAGCCATGTCCCTGACCGGCGATATGCTAGCTGAGCTCGTCCCTG
AGATCGGACCGAGGGCAAAACTGAAGAAGGCCCTTGAAGAGCTGAAGGAC
AATCCGGAGTCCGCTAAAAGCAGCAGTCCCGTTCACTCTGACTGGGAAAT
CCCCCGCTCCAGTCTGACTCTCGGTAAAATCCTGGGGAAGGGGCAGTTTG
GGGAGGTCCGTATAGGGGAGCTGCGGAAGAGAGGTGTCACCCAGACTGTG
GCTGTCAAGACGCTGAAAGAATCTGCAGAAGAAAGGACAATCACAGAAGA
CGAACCTCCCGTCAAGGAAGCAGCTGAGAATCCTTCATGTACTGCACTGG
ATGAAGACAGTTCACCTTATGAAAACACCATCTCCAGCAACGCAGACCTT
GTAACTGTGGACGACGTAGTGGAATTCCTGAGGGCCAAGGGCTTTGGGCA
GTATGCTGCAGCATTTAGGAAGCACGAAGTAGACGGAGAAGGAGCCATGT
CCCTGACCGGCGATATGCTAGCTGAGCTCGTCCCTGAGATCGGACCGAGG
GCAAAACTGAAGAAGGCCCTTGAAGAGCTGAAGGACAATCCGGAGTCCGC
TAAAAGCAGCAGTCCCGTTCACTCTGACTGGGAAATCCCCCGCTCCAGTC
TGACTCTCGGTAAAATCCTGGGGAAGGGGCAGTTTGGGGAGGTCCGTATA
GGGGAGCTGCGGAAGAGAGGTGTCACCCAGACTGTGGCTGTCAAGACGCT
GAAAGAATCTGCAGAAGAAAGGACAATCACAGAAGACGAACCTCCCGTCA
AGGAAGCAGCTGAGAATCCTTCATGTACTGCACTGGATGAAGACAGTTCA
CCTTATGAAAACACCATCTCCAGCAACGCAGACCTTGTAACTGTGGACGA
CGTAGTGGAATTCCTGAGGGCCAAGGGCTTTGGGCAGTATGCTGCAGCAT
TTAGGAAGCACGAAGTAGACGGAGAAGGAGCCATGTCCCTGACCGGCGAT
ATGCTAGCTGAGCTCGTCCCTGAGATCGGACCGAGGGCAAAACTGAAGAA
GGCCCTTGAAGAGCTGAAGGACAATCCGGAGTCCGCTAAAAGCAGCAGTC
CCGTTCACTCTGACTGGGAAATCCCCCGCTCCAGTCTGACTCTCGGTAAA
ATCCTGGGGAAGGGGCAGTTTGGGGAGGTCCGTATAGGGGAGCTGCGGAA
GAGAGGTGTCACCCAGACTGTGGCTGTCAAGACGCTGAAAGAATCTGCAG
AAGAAAGGACAATCACAGAAGACGAACCTCCCGTCAAGGAAGCAGCTGAG
AATCCTTCATGTACTGCACTGGATGAAGACAGTTCACCTTATGAAAACAC
CATCTCCAGCAACGCAGACCTTGTAACTGTGGACGACGTAGTGGAATTCC
TGAGGGCCAAGGGCTTTGGGCAGTATGCTGCAGCATTTAGGAAGCACGAA
GTAGACGGAGAAGGAGCCATGTCCCTGACCGGCGATATGCTAGCTGAGCT
CGTCCCTGAGATCGGACCGAGGGCAAAACTGAAGAAGGCCCTTGAAGAGC
TGAAGGACAATCCGGAGTCCGCTAAAAGCAGCAGTCCCGTTCACTCTGAC
TGGGAAATCCCCCGCTCCAGTCTGACTCTCGGTAAAATCCTGGGGAAGGG
GCAGTTTGGGGAGGTCCGTATAGGGGAGCTGCGGAAGAGAGGTGTCACCC
AGACTGTGGCTGTCAAGACGCTGAAAGAATCTGCAGAAGAAAGGACAATC
ACAGAAGACGAACCTCCCGTCAAGGAAGCAGCTGAGAATCCTTCATGTAC
TGCACTGGATGAAGACAGTTCACCTTATGAAAACACCATCTCCAGCAACG
CAGACCTTGTAACTGTGGACGACGTAGTGGAATTCCTGAGGGCCAAGGGC
TTTGGGCAGTATGCTGCAGCATTTAGGAAGCACGAAGTAGACGGAGAAGG
AGCCATGTCCCTGACCGGCGATATGCTAGCTGAGCTCGTCCCTGAGATCG
GACCGAGGGCAAAACTGAAGAAGGCCCTTGAAGAGCTGAAGGACAATCCG
GAGTCCGCTAAAAGCAGCAGTCCCGTTCACTCTGACTGGGAAATCCCCCG
CTCCAGTCTGACTCTCGGTAAAATCCTGGGGAAGGGGCAGTTTGGGGAGG
TCCGTATAGGGGAGCTGCGGAAGAGAGGTGTCACCCAGACTGTGGCTGTC
AAGACGCTGAAAGAATCTGCAGAAGAAAGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000009 | genome | Sc0000009:337077..340730 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96549_cuf14 |
| Biotype | protein_coding |
|
