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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96533_cuf4 >transcript:BL96533_cuf4-protein ID=transcript:BL96533_cuf4-protein|Name=transcript:BL96533_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=227bp
MNEHVCVSVQKQKEADKRRSMLARNAREEFRRSVHAAMADNKKQTVYDVA
TQLRKQSLGGAAPGSSSSKTSSPTQATLPARPTSRQEVIRWFQDFEQPRQ
AGMDARTHQVAAWFHGIISRLEAESLLEGRPVGSFLVRVSERVWGYTISY
RADGRCKHFLIDTSDNTYQFFGTNQLSHTSLWDLVSFHMKEPISSTGGEV
LKTPCGQSRQPPDYRDLLGESQNSSWL Run BLAST on NCBI mRNA from alignment at Sc0000006:7421949..7428473+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96533_cuf4 ID=transcript:BL96533_cuf4|Name=transcript:BL96533_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=6525bp|location=Sequence derived from alignment at Sc0000006:7421949..7428473+ (Branchiostoma lanceolatum)
GATACACATGCATGTATTACATAATACTCTTTGTATTGCAGTACAAAAGA
TGGCTGACAAGAAATGAATGAGTGAAAGAGTGAGTGAATGAAGGAATGAA
TGAAGTGTTTGTGTTGCAGTACAAAAGCAGGAGGCTGACAAGAGGAATGA
ATGAATGAATGAGTGAATGAGTTGCCCGGTACCCGATCAAGATCAAGAAG
AAGATCAGTGAATGAGTGAGTGAATGAGTGAATGAATGAATGAGTGAATG
AACGAACATGTTTGTGTTTCAGTACAAAAGCAGAAGGAGGCTGACAAGAG
GAGAAGCATGCTGGCGAGAAATGCTCGCGAGGAGTTCCGCCGGTCGGTCC
ATGCGGCGATGGCCGACAACAAGAAGCAGACTGTATACGACGTGGCCACG
CAGTTACGGAAACAGTCACTAGGGGGCGCCGCACCAGGATCAAGTAGTAG
CAAGTGAGTGATTCAGACATGATCTTAGACTGTGACAAAATGTCTGAAAA
TAATTTCATCAGGTTGGTATCAAACACCTTGTTTATCTATCTATCAATGT
TGCACCCTGCTAACAGTGGAGAGGGAGTCAGCCCGCCGGGCAGCAGCTAA
CACTTCTGGTCGTCTGGTTTTATTCACGGAGAAACTTTACAAGAATTCTG
AAGAAGTTTGAAACAATAGAAGCTGAATCGCAGTACTATTGGAATTGAAA
GCTTCTTGGCAGCCAAGAGTTTCTTGTGTGGGTTGAAAGCTGCAAAGCGA
ATATAATAAATGAAAAGCAAATTTTTGTCCTGTGCTGCTTCACTGTACTA
CATGTAGGTAAAAATGAGAAGGACTTGGATGTTGATTTCATGTTTCAAGT
GAGTTATTCATTTCTGGTCTTAACTCCTCCATTTACAGGACGTCGTCGCC
AACGCAAGCGACGCTTCCGGCGCGACCGACCTCGCGGCAAGAGGTCATCC
GCTGGTTCCAGGACTTCGAGCAGCCGCGCCAGGCGGGCATGGACGCCCGG
ACGCACCAGGTCGCTGCCTGGTTCCACGGTGAGTAGTCTAGAAATATAGG
CTTTACAGATTCAGAACCGGCCACGGACGAATGGTGGGCCACTAGGTTCA
TGGTAGGTATCAGTGAGAGAAAAATGGCCAGACTGTGTATGGATGGATGG
ATGCGCAGAGGCACCTGGTGCCAAGGTAAGTAGTTGGGACATAAAAAAAT
CACTACAGACACAACGCATGCCAGACCTTTTATTGGTAGTGTATCGGCGA
GAGGAAAGGGTTCAGACTGTGTGTGACGTACAGAACTGATGACAAGGTGG
TATTGAGGTTAGGGTTGCTGACTTAGAATTGGGAAAGATTTTAACTTTTC
TACCTCCCCCCTCCTCGAGGCGTGATCTCTCGGCAGGCGGAGTCTCTGCT
GAAGTGTTCACTTTGCATTTGGAAGGCAGGCTATTAGCTAGCAGGGCGCC
AAGGCGTCTTCTAGATGCCCTTCACTAAGAAAGATTATAACTTCACCCCC
CCTCTGCAGGCATCATCTCTCGGCTGGAGGCGGAGTCCCTACTGGAAGGT
CGGCCGGTCGGCAGTTTCCTTGTGCGCGTGAGCGAGCGTGTCTGGGGCTA
CACGATATCGTACCGCGCAGACGGGCGCTGCAAGCACTTCCTCATCGACA
CCTCCGACAACACCTACCAGTTCTTCGGCACCAACCAGCTCTCGCACACC
TCGCTGTGGGACCTCGTCAGCTTCCACATGGTGGGTCTTCTGTTTGTTTG
TGTGTGTGTTTGTTTGGTTTCTTTGTGCGTGTGTTTGTTTGTTTATGACA
CCAAAATACAGCATCTTCTTATTATCTGTAATAGAAATAGTATCATTCAA
AGAATATAAACATTCTAAACAAATACACACCCTTCTGATGTTATTTAACA
TTGAACCACAAGAATCCATACTTCCAGCTTTTGATTTTTCTCTGATATCC
CACCAGGTAATTACATTAATCAGTGACTTTACTCTTCCGATGATGTCACA
AAAACACGGCAGCCGGTTCGGAACCTTGCACCATGGCCTGTGGAAAAACA
TCATGTGATGAGCAAACAGTGCTCAATTATAGTGATTATGTTCAATTAAA
AGATATCATAATATTTAACTTGTTAACTTCTCTAAAGAACGTTCTTTCCG
AGCCACAGTACAAAGTTCCAAACCGGCTGCCATGCTCAATGTGACATCAT
CGGAAGAGTAAAGTCACTGATTAATGAACTTACCTGGTGGGAAGAATCAA
AAGCTGGAGGTATGATGTTTTGATGGTTCGATGTTCAACAATGTCTGAAG
GGTGTGTATTTTGTGCAAATGTAAAGTACTGTATGTTATTAAACAATACT
ATTATGTTTCATGTAATTTCCGGAAATTTTTGATTTTGATATCATTGGTG
TCTCATACACTTTAACTGTAGAGTATACATGTATATGGTTGTTTGATGGA
TTGAGTTCAATGCAAATTAAGGACACATCATGGATGGAGACGCGTTTCCC
TCAAAACAAGACTGAGTCCCGTTTTCCCCTCTGCGTCTCCAGAAGGAGCC
GATCTCGAGTACGGGAGGGGAGGTTCTGAAGACGCCGTGCGGGCAGAGCA
GGCAGCCGCCGGACTACCGGGACCTCCTGGGGGAGTCTCAGAACTCCTCC
TGGTTATAACAACGTCTTAAACACGTCTTAAGGAAAGTAACAACGTCTTC
TCGGTAAGAAAGCCGCCTGACCTGATGGGAGTCTCAGAACCCCTAACGGT
TGTAACATTTAATTTGTCTGAAAAACATCTCACAACATCTTTAGTAAAGT
AACAACATCTTCACAGAACTGCTCCTGGTTATAGCAATGTCTTAAAAAGT
CTTTAGTTAAGTTACAAAGTCTTCTCACTAAGGAATCCGTCTGAGACGTT
TCTCATTTAGGGACCGCAGAACTCTTCCCTGTCATCATGTCTCCTCCTTC
AGGGCTTGAGATGTAAACCTGCGACCAGCTGAACTCTCAGGATGGCAGGA
AACATTGGATTGTGCAGACTTGAAACATTTGACTTGTTAGTAGTATCATG
AATCAATCATGAATACAATGTTAATTTGCTAAACAACTAAGTCTGCAGGG
AAAAGAGTAAAATGCCATCCTGCAATAATAAGCCACATGTAGTTACAAGG
TAGCTTAAAATTCTGAACAAAAAATACAGAAAACAGCAAAACTTGCCATC
CGAGATTACATAGACCTACAAACAGCACTGGCTAAGGAATGTATCAAACA
ATGGACAGTGGTGAAAATGTGTCATGTAGACATCTAATTTGTGGCCAAAA
TGTGTCATTAGTTACTGTAGAAGACATGCCATCGTTGCTATGGTTACTAA
TGCAGAAGACATGCCATCGTTGCTATGGTTACTAATGCAGAAGACATGCC
ATCGTTGCTATGGTTACTAATGCAGAAGACATGCCATCGTTGCTATGGTT
ACTAAGTGCAGAAGACATGCCATCGTTGCTATGGTTACTAAGTGCAGAAG
ATAATTTCTAGTAATCTCAGACGAAAAGACTTGGGCCAATGTTACAAGGA
ATAAGTGTAATATTTGATTTAGTTCTGTTGGAATGGAATAGGAAATTTCT
CTTGAATGAGGTACTATTAGATATAACAGCAATATCTAAGATATCACAAT
CGGGATGTGAATGAAGGCAATAACGCTAAGCATTATATCTGCCATAAAGG
AGGAGCAATATCAATTATGCAATTATAGATCAGATATCTATGTTTGAATG
TATGTTTTTGATAACACAATTATGTATAATCAAAAATATTGTTATAGGTT
TACTAATGAAGCTACTGGCAGATTATTTAGTCATTAAAAGAAATTTGACA
GCAATATTTGACATGTAACAGAGAAGTGTATAATACATGTAACAGCAGTA
GAATCATGCATACGTAATGTTAGATTGTTGTACAATGTGTACAGCAACTA
CTCAAGAGGCTCAGCTGGTAAGAGTGGTCACTATAGACAGGTGGTCAGTA
TAGACAGGTGGTCAGTATAGACAGATGGTCAGTATAGACAGGTGGTCACT
ATAGACAGGTGGTCACTATAGACAGGTGGTCACTATAGACAGATGGTCAG
TATAGACAGGTGGTCACTATAGACAGGTGGTCACTATAGACAGTTGGTCA
CTGCAGACTGGCGGTCACTGTAGACAAGTGGTCACTTTAGACAGGTTTGA
CTGTATACATTGTATAATCATCAAAATGTCAAAATGACTTTCTATAAACA
AGGTAGCTTTTGTAGAATGTCATGTTTCCTAAATTGCACTTTGAAGTGAC
CACAGTTCATTCCGAACTTCTCAATCTTTATATATAGCCGCTCATGTAGC
GTTCTAAGGAAGGAAAATATCAGTAGAAAGCAGATATACTAGTAGTTGAT
GTTTATATGTCATATATAGATACATTGTATGATAGAATATTTACAAAGTA
GGATAACGCTACATACATGTACTATTCAGTGAAACTTGCCCAAGTACTTT
CTCTACTTAGTACTTTTAACAAGTGTGCTGCTTTTTATTGCCATTTATAA
TCAGAGTAAACGTTATGGAATCATAGCCACACCACCCAGCAACGCCCCCT
ATTGGTGAGGAAGGGTACTGCACTTAAGTGACCCAACGCTGTCACTAGAA
GTACAATCAACTATGACTTTTTGACTTCGGTGCAACATGTTAGCACACTC
ACACTTGTGGTAGTTTAAATGTTCTTCTATCCAGGAAATACTTTGTGCCT
TTGGTAACATTTATTGGAAGTTGATTTATAACGAATACAAACATGTAAAA
CAATTATATTTTGTTGAGAAGAAATTGATACTAACATACTTATGCAATCT
CACCCTCAAACTTGTATAAAATTGTTATCAGTATGGTGATATTTGTATGT
ACTGTTTTCTATTATCAACTTTGTATAATTTGTATCATATTCATCTGCAT
ACAGTGAGGCATACACTGTACATTACTTGCTGTATATATAAATTTTGTAC
TACCGTCAACTTTTCAACAAGTAGCTCTCAAACCGAGTCCCTTTCGTTGG
TTCCCCAATAAACAAGAAATGATCCTGGACTGAAAGATCAACATGAAAAC
ATTCTGAGGGGAAGTCCCCTGAGTCTTGGTTCACAGTTTCAGATGGTGAA
TACAGACAGACATAAGTGTTCTTCCCAGCCTTCTTTTTCATTTTTTTGCT
AGGATTTTGCATGAAACGTCCAAGAAAATTAATTGGTGTAGTCAGCTGGC
CCAGATATGAAGCAGAATTCACAGTTAAGCCAGGTTACGGGCATGGATGT
GCAGTACGGATTTCTTTGGTGTCCGAAGCAGTAGCCAGTACATGAAGGAC
CCCTAGCTGTTTGCCTGGGTATTGCAGACACGCTATGGCACCAGACTTGC
CAAACTATACTAATTAGCATACATACAATGTATGTAAATGTACATTTTTT
CTGTATACAATATGAATATAGGTAATTTGCTGTAGTGCAAGTCAATGAAA
AATATGTTATGCAATTCTTCCAGTGAGTGATTTTTTTCTAATTGATGTTT
TAGTGCTGATTTACTATTGTCAACATGGGCTAATGCCCTACCAATGCTGG
GAGGTTGTGGCGAAACTCACTCTCCCAGCATTTGAGAACCATAGCCCATG
TTGAGAAAGCGCGAATCAAAAATAAGAAAATAGGCGTTTCAAGACTGCAA
AGGAGGCTACCCTGCCATGTTTGTCCACGTGAATTTCCAACTAGGATGTC
ACTGTCTAAATCAGGATGAAGTAATCTGCCAACCCAGAATTTTACTTTAA
GTAGTGCTGCCTCTGTTATAATGTTGGCTAATGTTATAAAGTCTAGTGGC
TCTTGCCTTTTGTTGTGCATGTTTACTAGTACATGTTTGCTTTTTGTTCA
GTTACAAATTTACATGTTTAAGCTACATGTTCAGTCAGTGTCTGTAAAAC
GTGGACGTTTGTCCTGTTTGTATTCTTCTGCTGCTTATCCGAGAACCACT
GAAAAAATAAAGCAATCAAAGACTTCAAAGAAGCCAAAGTTAATGTTGCT
TTTTCTTCAGTGTACTACATACATGTATGATTCTTGTTTCTTTCACTGTA
ACTTTACGTTCTGTTCTCACGGTTTCCGTGAACTTATCATCACCGTGAAA
AAAACACTGTTGTAATTATTTATGATTCCTTCACACATCCGTTCTGTAAA
TCACTTGGTAGTAGTGAGTTGGTACCACCGTGAAGTTAAAGTTCATTGAA
AATGTCAATTTTCCTTACACTGTGAAGATAAAGTGAATTACACTAACACA
TATTAGTATTTCATTAATCAAATGTTCATGTCAGCATTTCTTGACTAGAT
AACAAATGTATCTTAAAGTTTCCGAAACGAGTTTTTAACTGCAATTTCCA
ACACAAAAATTGGACTTACCCAAATTTTCAGAATGATCTCTACCAACACA
GATGAACTTTCAAGCAAATGAATCTTTCTTTGTATGTTCATATTTCACGT
CCATCAGTTGTCATGGAAACCTGTG Coding sequence (CDS) from alignment at Sc0000006:7421949..7428473+ >transcript:BL96533_cuf4 ID=transcript:BL96533_cuf4|Name=transcript:BL96533_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=2736bp|location=Sequence derived from alignment at Sc0000006:7421949..7428473+ (Branchiostoma lanceolatum)
ATGAACGAACATGTTTGTGTTTCAGTACAAAAGCAGAAGGAGGCTGACAA
GAGGAGAAGCATGCTGGCGAGAAATGCTCGCGAGGAGTTCCGCCGGTCGG
TCCATGCGGCGATGGCCGACAACAAGAAGCAGACTGTATACGACGTGGCC
ACGCAGTTACGGAAACAGTCACTAGGGGGCGCCGCACCAGGATCAAGTAG
TAGCAAGACGTCGTCGCCAACGCAAGCGACGCTTCCGGCGCGACCGACCT
CGCGGCAAGAGGTCATCCGCTGGTTCCAGGACTTCGAGCAGCCGCGCCAG
GCGGGCATGGACGCCCGGACGCACCAGGTCGCTGCCTGGTTCCACGGCAT
CATCTCTCGGCTGGAGGCGGAGTCCCTACTGGAAGGTCGGCCGGTCGGCA
GTTTCCTTGTGCGCGTGAGCGAGCGTGTCTGGGGCTACACGATATCGTAC
CGCGCAGACGGGCGCTGCAAGCACTTCCTCATCGACACCTCCGACAACAC
CTACCAGTTCTTCGGCACCAACCAGCTCTCGCACACCTCGCTGTGGGACC
TCGTCAGCTTCCACATGAAGGAGCCGATCTCGAGTACGGGAGGGGAGGTT
CTGAAGACGCCGTGCGGGCAGAGCAGGCAGCCGCCGGACTACCGGGACCT
CCTGGGGGAGTCTCAGAACTCCTCCTGGTTATAAATGAACGAACATGTTT
GTGTTTCAGTACAAAAGCAGAAGGAGGCTGACAAGAGGAGAAGCATGCTG
GCGAGAAATGCTCGCGAGGAGTTCCGCCGGTCGGTCCATGCGGCGATGGC
CGACAACAAGAAGCAGACTGTATACGACGTGGCCACGCAGTTACGGAAAC
AGTCACTAGGGGGCGCCGCACCAGGATCAAGTAGTAGCAAGACGTCGTCG
CCAACGCAAGCGACGCTTCCGGCGCGACCGACCTCGCGGCAAGAGGTCAT
CCGCTGGTTCCAGGACTTCGAGCAGCCGCGCCAGGCGGGCATGGACGCCC
GGACGCACCAGGTCGCTGCCTGGTTCCACGGCATCATCTCTCGGCTGGAG
GCGGAGTCCCTACTGGAAGGTCGGCCGGTCGGCAGTTTCCTTGTGCGCGT
GAGCGAGCGTGTCTGGGGCTACACGATATCGTACCGCGCAGACGGGCGCT
GCAAGCACTTCCTCATCGACACCTCCGACAACACCTACCAGTTCTTCGGC
ACCAACCAGCTCTCGCACACCTCGCTGTGGGACCTCGTCAGCTTCCACAT
GAAGGAGCCGATCTCGAGTACGGGAGGGGAGGTTCTGAAGACGCCGTGCG
GGCAGAGCAGGCAGCCGCCGGACTACCGGGACCTCCTGGGGGAGTCTCAG
AACTCCTCCTGGTTATAAATGAACGAACATGTTTGTGTTTCAGTACAAAA
GCAGAAGGAGGCTGACAAGAGGAGAAGCATGCTGGCGAGAAATGCTCGCG
AGGAGTTCCGCCGGTCGGTCCATGCGGCGATGGCCGACAACAAGAAGCAG
ACTGTATACGACGTGGCCACGCAGTTACGGAAACAGTCACTAGGGGGCGC
CGCACCAGGATCAAGTAGTAGCAAGACGTCGTCGCCAACGCAAGCGACGC
TTCCGGCGCGACCGACCTCGCGGCAAGAGGTCATCCGCTGGTTCCAGGAC
TTCGAGCAGCCGCGCCAGGCGGGCATGGACGCCCGGACGCACCAGGTCGC
TGCCTGGTTCCACGGCATCATCTCTCGGCTGGAGGCGGAGTCCCTACTGG
AAGGTCGGCCGGTCGGCAGTTTCCTTGTGCGCGTGAGCGAGCGTGTCTGG
GGCTACACGATATCGTACCGCGCAGACGGGCGCTGCAAGCACTTCCTCAT
CGACACCTCCGACAACACCTACCAGTTCTTCGGCACCAACCAGCTCTCGC
ACACCTCGCTGTGGGACCTCGTCAGCTTCCACATGAAGGAGCCGATCTCG
AGTACGGGAGGGGAGGTTCTGAAGACGCCGTGCGGGCAGAGCAGGCAGCC
GCCGGACTACCGGGACCTCCTGGGGGAGTCTCAGAACTCCTCCTGGTTAT
AAATGAACGAACATGTTTGTGTTTCAGTACAAAAGCAGAAGGAGGCTGAC
AAGAGGAGAAGCATGCTGGCGAGAAATGCTCGCGAGGAGTTCCGCCGGTC
GGTCCATGCGGCGATGGCCGACAACAAGAAGCAGACTGTATACGACGTGG
CCACGCAGTTACGGAAACAGTCACTAGGGGGCGCCGCACCAGGATCAAGT
AGTAGCAAGACGTCGTCGCCAACGCAAGCGACGCTTCCGGCGCGACCGAC
CTCGCGGCAAGAGGTCATCCGCTGGTTCCAGGACTTCGAGCAGCCGCGCC
AGGCGGGCATGGACGCCCGGACGCACCAGGTCGCTGCCTGGTTCCACGGC
ATCATCTCTCGGCTGGAGGCGGAGTCCCTACTGGAAGGTCGGCCGGTCGG
CAGTTTCCTTGTGCGCGTGAGCGAGCGTGTCTGGGGCTACACGATATCGT
ACCGCGCAGACGGGCGCTGCAAGCACTTCCTCATCGACACCTCCGACAAC
ACCTACCAGTTCTTCGGCACCAACCAGCTCTCGCACACCTCGCTGTGGGA
CCTCGTCAGCTTCCACATGAAGGAGCCGATCTCGAGTACGGGAGGGGAGG
TTCTGAAGACGCCGTGCGGGCAGAGCAGGCAGCCGCCGGACTACCGGGAC
CTCCTGGGGGAGTCTCAGAACTCCTCCTGGTTATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000006 | genome | Sc0000006:7421949..7428473 + |
Properties
| Property Name | Value |
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| Transcript id | BL96533_cuf4 |
| Biotype | protein_coding |
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