transcript:BL96395_cuf75 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96395_cuf75
Unique Nametranscript:BL96395_cuf75
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96395_cuf75

>transcript:BL96395_cuf75-protein ID=transcript:BL96395_cuf75-protein|Name=transcript:BL96395_cuf75|organism=Branchiostoma lanceolatum|type=polypeptide|length=279bp
EKYRFRVSAQNYGAVSEPAELLQPVVAKEQIFPPAMDLQGITSDTIMVKE
GTDFVLKIPYSGQPVPTVTWKRGLGVMQQTARIFTKTTRELTQLFIKRAM
KADSGQFSVSLSNAAGSQQADFQINVLGKPGPPEGPVDFEDVSAESVTMN
WKAPNDDGGSEVTNYVIEKSDNRGVAWVYVSSGVKRTTMRVTKLTKGKVY
AFRISAENRFGVGRPIESPYITAKDPYDIPGPPGIPETHDVTREQMCLTW
PEPADDGGSPVTGYVIERKEMFSNRWVKL
Run BLAST on NCBI

mRNA from alignment at Sc0000008:5588836..5590943+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96395_cuf75 ID=transcript:BL96395_cuf75|Name=transcript:BL96395_cuf75|organism=Branchiostoma lanceolatum|type=mRNA|length=2108bp|location=Sequence derived from alignment at Sc0000008:5588836..5590943+ (Branchiostoma lanceolatum)
GAGAAGTACCGCTTCCGCGTCTCCGCGCAGAACTACGGCGCCGTCAGCGA
GCCCGCAGAGCTGCTACAGCCCGTGGTGGCCAAGGAACAGATATGTACGT
TACCATGGAGATAGATACGTCTGATCGATTACACACTATTCTGTATCGCT
TTTGATTAGTAATTATTGCAATAGTTTTGTAGTTTAGGTGAAAAATACAA
ATGATAACTATACCAGGGAATCATATGTACAATCAAAGACCAAAGCATAT
TCTATGATTAAAAAAAAATATTTGTTTATCCTATTCTATGGTTGCTGCAA
AAGAGTGGTATGCATGAAGATTATATAGTCATGTATTGTATATTAAGGTC
TAATGCAGTCTTAATCAAAACCAGTTTGAGCTATCAAGCTGCAAAATGAT
ACTCTTTTCATGTCCTTTGGATTTGATACTAAACTAGATATTTACAGTGC
TGTACATATTATCAGTATCATTCAGTATCATACAGTAAATATGTAAGAGA
AAAATCATTTTATTCTAACCAATTGCTCGATTTTCCCCCCAGTCCCGCCA
GCCATGGACCTGCAGGGCATCACCTCTGACACCATCATGGTAAAGGAGGG
AACGGACTTCGTGCTGAAGATCCCGTACTCCGGCCAGCCCGTGCCCACGG
TCACCTGGAAGCGCGGCCTCGGCGTCATGCAGCAGACCGCCCGCATCTTC
ACCAAGACCACCCGCGAGCTGACACAGCTCTTCATCAAGCGCGCCATGAA
GGCAGACAGCGGACAGTTCTCCGTCAGTCTGTCCAACGCCGCCGGCAGCC
AGCAAGCAGACTTCCAGGTATGCTTAAAAGAGAAATAGGAAGAAATCTTT
GCTATATCTGTACCAGCCATAGAAGCAGTGAAATAAGTGCTAGTGTTCCA
TGATTTTGCCATTGCTTGATTGTACAAAACAAAAAGAAAGAAAAAACAAA
AAAGCAAACAAAGGAAAAGGTGATATAGGCTGAAACAAAACAATAAGAAT
GAAGATAATGAATCTATTGTAGGTTCCGAATGAATCTAACATTAACATCT
CTGAATATGATATTTCACTAACACTTTTATTTCTATTTTTACTATTTGCA
TAGTGTAAAAGTTAACTTAAATAGATACTTTTAGTTAAGTAGAAAATGTA
CTATTTCATAGTCTTACCAGACTTATGAGTGCCTGCATCTAATGCGTTTA
GAAAAACCCATTACAATCGCCCAGCTCTTGTACAAGTGAAAATGTAACAT
TTGTATCCATCTCAACAGATTAACGTCCTGGGCAAGCCCGGACCACCTGA
AGGACCGGTCGACTTCGAGGACGTGAGCGCCGAGAGCGTCACCATGAACT
GGAAGGCTCCGAACGACGACGGCGGAAGTGAGGTCACCAACTACGTCATC
GAGAAGTCCGACAACCGCGGAGTGGCGTGGGTTTACGTCAGTTCCGGTGT
GAAGAGGACGACCATGAGAGTGACGAAGCTGACCAAGGGGAAGGTGTACG
CCTTCCGCATCAGCGCAGAGAACCGCTTCGGTGTCGGCAGGCCGATCGAG
TCGCCCTACATCACAGCAAAGGATCCATACGGTGAGCACTATTAACGATG
TCGCAAAAGCTTTGTTCGTCCATGTTAGAATGCAACAGACAAAATATGCT
GCAGTTGGAAATCTGCTGAACATTGCAAAGCCTAGCGCTGAAGATACTCA
ATTGTCATAGAAAACGTCTTATGTTTTAAGATGTTCTGGTTTGGCAAATT
ATCTACTGTAATCGCCTTCAGAGTATATGAAACCCAAACAGGCATACACC
CTAGAAATGGTTGCCAGATTGACATTGTGAAATAAATGATACTGTATGGA
CTTAACTACATGTTTGAATGTGCACTTTGTAATAACCTCGACTCTCAAAT
TGTACTGATCTGAAATACATCTAACTGTTAATGTGCCTTCTTCTTCCCCA
GACATCCCCGGGCCGCCCGGTATCCCCGAGACGCATGACGTCACCAGGGA
GCAGATGTGCCTCACGTGGCCGGAGCCCGCCGACGATGGCGGCAGCCCCG
TCACAGGCTACGTCATCGAGCGGAAGGAGATGTTCTCCAACCGCTGGGTG
AAGCTCAA

Coding sequence (CDS) from alignment at Sc0000008:5588836..5590943+

>transcript:BL96395_cuf75 ID=transcript:BL96395_cuf75|Name=transcript:BL96395_cuf75|organism=Branchiostoma lanceolatum|type=CDS|length=3348bp|location=Sequence derived from alignment at Sc0000008:5588836..5590943+ (Branchiostoma lanceolatum)
GAGAAGTACCGCTTCCGCGTCTCCGCGCAGAACTACGGCGCCGTCAGCGA
GCCCGCAGAGCTGCTACAGCCCGTGGTGGCCAAGGAACAGATATTCCCGC
CAGCCATGGACCTGCAGGGCATCACCTCTGACACCATCATGGTAAAGGAG
GGAACGGACTTCGTGCTGAAGATCCCGTACTCCGGCCAGCCCGTGCCCAC
GGTCACCTGGAAGCGCGGCCTCGGCGTCATGCAGCAGACCGCCCGCATCT
TCACCAAGACCACCCGCGAGCTGACACAGCTCTTCATCAAGCGCGCCATG
AAGGCAGACAGCGGACAGTTCTCCGTCAGTCTGTCCAACGCCGCCGGCAG
CCAGCAAGCAGACTTCCAGATTAACGTCCTGGGCAAGCCCGGACCACCTG
AAGGACCGGTCGACTTCGAGGACGTGAGCGCCGAGAGCGTCACCATGAAC
TGGAAGGCTCCGAACGACGACGGCGGAAGTGAGGTCACCAACTACGTCAT
CGAGAAGTCCGACAACCGCGGAGTGGCGTGGGTTTACGTCAGTTCCGGTG
TGAAGAGGACGACCATGAGAGTGACGAAGCTGACCAAGGGGAAGGTGTAC
GCCTTCCGCATCAGCGCAGAGAACCGCTTCGGTGTCGGCAGGCCGATCGA
GTCGCCCTACATCACAGCAAAGGATCCATACGACATCCCCGGGCCGCCCG
GTATCCCCGAGACGCATGACGTCACCAGGGAGCAGATGTGCCTCACGTGG
CCGGAGCCCGCCGACGATGGCGGCAGCCCCGTCACAGGCTACGTCATCGA
GCGGAAGGAGATGTTCTCCAACCGCTGGGTGAAGCTCGAGAAGTACCGCT
TCCGCGTCTCCGCGCAGAACTACGGCGCCGTCAGCGAGCCCGCAGAGCTG
CTACAGCCCGTGGTGGCCAAGGAACAGATATTCCCGCCAGCCATGGACCT
GCAGGGCATCACCTCTGACACCATCATGGTAAAGGAGGGAACGGACTTCG
TGCTGAAGATCCCGTACTCCGGCCAGCCCGTGCCCACGGTCACCTGGAAG
CGCGGCCTCGGCGTCATGCAGCAGACCGCCCGCATCTTCACCAAGACCAC
CCGCGAGCTGACACAGCTCTTCATCAAGCGCGCCATGAAGGCAGACAGCG
GACAGTTCTCCGTCAGTCTGTCCAACGCCGCCGGCAGCCAGCAAGCAGAC
TTCCAGATTAACGTCCTGGGCAAGCCCGGACCACCTGAAGGACCGGTCGA
CTTCGAGGACGTGAGCGCCGAGAGCGTCACCATGAACTGGAAGGCTCCGA
ACGACGACGGCGGAAGTGAGGTCACCAACTACGTCATCGAGAAGTCCGAC
AACCGCGGAGTGGCGTGGGTTTACGTCAGTTCCGGTGTGAAGAGGACGAC
CATGAGAGTGACGAAGCTGACCAAGGGGAAGGTGTACGCCTTCCGCATCA
GCGCAGAGAACCGCTTCGGTGTCGGCAGGCCGATCGAGTCGCCCTACATC
ACAGCAAAGGATCCATACGACATCCCCGGGCCGCCCGGTATCCCCGAGAC
GCATGACGTCACCAGGGAGCAGATGTGCCTCACGTGGCCGGAGCCCGCCG
ACGATGGCGGCAGCCCCGTCACAGGCTACGTCATCGAGCGGAAGGAGATG
TTCTCCAACCGCTGGGTGAAGCTCGAGAAGTACCGCTTCCGCGTCTCCGC
GCAGAACTACGGCGCCGTCAGCGAGCCCGCAGAGCTGCTACAGCCCGTGG
TGGCCAAGGAACAGATATTCCCGCCAGCCATGGACCTGCAGGGCATCACC
TCTGACACCATCATGGTAAAGGAGGGAACGGACTTCGTGCTGAAGATCCC
GTACTCCGGCCAGCCCGTGCCCACGGTCACCTGGAAGCGCGGCCTCGGCG
TCATGCAGCAGACCGCCCGCATCTTCACCAAGACCACCCGCGAGCTGACA
CAGCTCTTCATCAAGCGCGCCATGAAGGCAGACAGCGGACAGTTCTCCGT
CAGTCTGTCCAACGCCGCCGGCAGCCAGCAAGCAGACTTCCAGATTAACG
TCCTGGGCAAGCCCGGACCACCTGAAGGACCGGTCGACTTCGAGGACGTG
AGCGCCGAGAGCGTCACCATGAACTGGAAGGCTCCGAACGACGACGGCGG
AAGTGAGGTCACCAACTACGTCATCGAGAAGTCCGACAACCGCGGAGTGG
CGTGGGTTTACGTCAGTTCCGGTGTGAAGAGGACGACCATGAGAGTGACG
AAGCTGACCAAGGGGAAGGTGTACGCCTTCCGCATCAGCGCAGAGAACCG
CTTCGGTGTCGGCAGGCCGATCGAGTCGCCCTACATCACAGCAAAGGATC
CATACGACATCCCCGGGCCGCCCGGTATCCCCGAGACGCATGACGTCACC
AGGGAGCAGATGTGCCTCACGTGGCCGGAGCCCGCCGACGATGGCGGCAG
CCCCGTCACAGGCTACGTCATCGAGCGGAAGGAGATGTTCTCCAACCGCT
GGGTGAAGCTCGAGAAGTACCGCTTCCGCGTCTCCGCGCAGAACTACGGC
GCCGTCAGCGAGCCCGCAGAGCTGCTACAGCCCGTGGTGGCCAAGGAACA
GATATTCCCGCCAGCCATGGACCTGCAGGGCATCACCTCTGACACCATCA
TGGTAAAGGAGGGAACGGACTTCGTGCTGAAGATCCCGTACTCCGGCCAG
CCCGTGCCCACGGTCACCTGGAAGCGCGGCCTCGGCGTCATGCAGCAGAC
CGCCCGCATCTTCACCAAGACCACCCGCGAGCTGACACAGCTCTTCATCA
AGCGCGCCATGAAGGCAGACAGCGGACAGTTCTCCGTCAGTCTGTCCAAC
GCCGCCGGCAGCCAGCAAGCAGACTTCCAGATTAACGTCCTGGGCAAGCC
CGGACCACCTGAAGGACCGGTCGACTTCGAGGACGTGAGCGCCGAGAGCG
TCACCATGAACTGGAAGGCTCCGAACGACGACGGCGGAAGTGAGGTCACC
AACTACGTCATCGAGAAGTCCGACAACCGCGGAGTGGCGTGGGTTTACGT
CAGTTCCGGTGTGAAGAGGACGACCATGAGAGTGACGAAGCTGACCAAGG
GGAAGGTGTACGCCTTCCGCATCAGCGCAGAGAACCGCTTCGGTGTCGGC
AGGCCGATCGAGTCGCCCTACATCACAGCAAAGGATCCATACGACATCCC
CGGGCCGCCCGGTATCCCCGAGACGCATGACGTCACCAGGGAGCAGATGT
GCCTCACGTGGCCGGAGCCCGCCGACGATGGCGGCAGCCCCGTCACAGGC
TACGTCATCGAGCGGAAGGAGATGTTCTCCAACCGCTGGGTGAAGCTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96395gene:BL96395Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96395_cuf75transcript:BL96395_cuf75-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96395_cuf75-E1BL96395_cuf75-E1-1564476830-87252Branchiostoma lanceolatumexon
BL96395_cuf75-E2BL96395_cuf75-E2-1564476830-87254Branchiostoma lanceolatumexon
BL96395_cuf75-E3BL96395_cuf75-E3-1564476830-87256Branchiostoma lanceolatumexon
BL96395_cuf75-E4BL96395_cuf75-E4-1564476830-87259Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000008genomeSc0000008:5588836..5590943 +
Properties
Property NameValue
Transcript idBL96395_cuf75
Biotypeprotein_coding