|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96225_cuf4 >transcript:BL96225_cuf4-protein ID=transcript:BL96225_cuf4-protein|Name=transcript:BL96225_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=184bp
NCGDHRDGDRWQRDSCTTCTCVSGVEDCVTQRCPPAPCQYPRIPAGRCCP
ECKGCEYEGRKLRNGQIFDADRCTSCTCLRGQVECRRRECPVLLCQDQYT
PPGDCCPRCEGGCEYEMMTFDDGTYFTPMSNPCLNCSCLQGLVRCNPVPC
PPAQCSNPVKPLGRCCPICPGSHCVVCPLSPCHG Run BLAST on NCBI mRNA from alignment at Sc0000003:5640751..5643401+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96225_cuf4 ID=transcript:BL96225_cuf4|Name=transcript:BL96225_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=2651bp|location=Sequence derived from alignment at Sc0000003:5640751..5643401+ (Branchiostoma lanceolatum)
AACTGCGGAGACCACAGGGACGGAGACCGATGGCAGCGTGATTCCTGTAC
CACCTGTACCTGTGTGGTAAGGGTTCTTTTGGTTTGGCAGAGTTACCCAA
ACCTGATGTTACTGTTAGTGTGGGGAAAAGTTAGCTCTGATCTTTGTGAC
GAAATGTTTTCTGACATAATGATTTTGAATGACAATTTTGATACAGTCAC
TCATGCTATCATTATGGTGACGTCAAGGTTTCAAAGTGACTTCTTGAGTT
TTTTTGTTCGGGTGTTGGAGATTCCATATGTTTGATGTGTTTCTAAAATG
TCAAGTGAATTGTTTAACCTTCTCCCAGCTGCCCAACTCTGTAACCAATA
GAGAACGGGCTGCCAAACGGCTACTTCAGTTACTTCAGTATGCTAAGTGT
TTTGTGTTGTTGTTCACCTTAGTCTGGAGTTGAAGACTGTGTGACCCAGA
GGTGTCCCCCTGCCCCATGTCAGTATCCCAGGATTCCTGCTGGCAGGTGC
TGCCCAGAGTGCAAAGGTCAGGGTCAACATTGATGTCATCAATGTCCGCT
TAGATTAGTATTTCTTATTCTAGATTTTCAACATTTTTTTGTCTCTTTCT
GTTTATTAATTTTCAAAATTAAAAAAAAGACCATGGAACACAAAATGAAT
GAAACACATGATTTCCAACATTTGTTTCACCAGCTTAGCCCTGTCCTTGG
TGCTGAATCTTCTATTGCCATCACTTTGAAAACTGTTATACAGTCAAACT
TACCAAAGAAGACCAGGGCATTGATAAAAGTCAAGACCACTCAAAGAACT
AATAGAGACTGGTCTATGTGGACAGGTAGTCACCATAAACAGGATTCTCG
ATGCTTGTTTCAATGGAAAAATTATATAAGTGTCCACCAAAAAATGGCCA
CATTGGCCAGGTGGTCCTTATATAGAGGTGGTCACGTGTACAGGTTTGAC
TATATCAGTGACCAGTTGGTCCTTATGTAGATATGGTCAAATGTACAGGT
TTAACTGTACTGTAACATATATGGGCTTGTGTAATTAATAAAAGGGCTTG
TCTGAATTATTCTTTTTAAGAGGTTAATTAGGGATTCCTGATAAGCTCTC
CTCTATAGATGTACTTTTTTTGCTCCCTTTTTTGTCTCATGTCTCAGGTT
GTGAGTATGAAGGCAGGAAGCTTAGGAATGGACAGATCTTTGATGCCGAC
AGATGCACAAGTTGTACCTGTCTGAGGGGTCAGGTGGAATGTCGGAGGAG
GGAATGTCCCGTCCTGCTGTGCCAGGATCAGTACACACCCCCTGGGGACT
GCTGTCCTCGCTGTGAAGGAGGTGGGTTCAATGTCGCAATAAACTTGCTT
GTATAGTACTAGTTGTTTTGATTTAGATTTTGAATAGTGCTAGTCGCTTA
GATTTATGTTAGATTTTGTCACATGTCATACATGTACGCCTAAAGTACGC
AATTCAGCTTCCTGCTGCGCTGAAGACGCTGCCATGTATTTTAGAGATGA
ATGAACAAATCAATAAACTTACTTATATAAACAGAATGTGAAACAAGAAT
GGTATATCAATGCCTTCAAGGATCTGTCAAGAAGTTCTATTTTAGTTCAA
AGTGAAATCGATGCTTCTCAACTTCACACTTAGTTGAAGAGAATATTTTC
AGTCTTTAGTGAAGAGAATTAACTCTAAGAGGAATGTCTGAGAAACGCTA
AGTCTGGTTAATTCCCATTGCAGGTTGTGAGTATGAAATGATGACATTTG
ACGACGGCACCTACTTCACCCCCATGTCCAACCCCTGCCTCAACTGTTCC
TGTCTGGTAAGTTATTGCAATTCTCTTCCTTCTGCATTACTTGTTACTTT
TTGAACGTTTGAAAGTACATTTGAGTGCATGTTAGGATATTATTCTAAGC
TGTATAGTCCAATGTCAGAGATTTCTATTTGCATTTGCTATTGTCCGCCT
CCTTTTGCATTCAATTTGGACAGTTTTTTTTGGACATGTGAGAGCTCCAA
TTAGGTGCACGTTGGTATATCATCTTAATTATAATTTTAGTGTTAGAAAA
TCAATGTCTGTATCAAGTAAGCTTCTTTTTTACCATTAAGTTTAAACCAA
GTGTTAGTCTTTACTTAAACAGTTACCTTTTAGATTGAATCAAACTTCTT
GCTTTTTCTCTTGCCCACACAGCAAGGCCTGGTGAGGTGTAACCCAGTCC
CCTGTCCTCCTGCCCAATGTTCAAACCCAGTCAAGCCTCTGGGAAGGTGC
TGCCCCATCTGTCCTGGTAAGACTCATTTGACATGTACATAAATTTCCTT
TTACATGTATCACCATTTATATATATATATATATATATGGCCTCTGTCGG
TCAGTATTGACCATGGTAAAATCCTAATTCACAACAGCCCTACAGCATCG
ACTATGGCTAAACAGCCCTATACGAGAATGGCAGTCTCTGCCACAAAAAT
CACATCTGTAAGCTGACTCAGTTCTATTGCAAAGCTCTTTTCTGCGCACC
ATGTTACCACAATGTTCTTTCTGTATCCTGTCTTTTCCTGTTTCTAATGT
GTATATTGTCTAATGTGTGAATAGATCTAAGTGTAACTTGTTGCTCATTC
TGTGTTCAAGGCTCCCACTGTGTGGTCTGTCCTTTATCTCCATGTCATGG
C Coding sequence (CDS) from alignment at Sc0000003:5640751..5643401+ >transcript:BL96225_cuf4 ID=transcript:BL96225_cuf4|Name=transcript:BL96225_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=3312bp|location=Sequence derived from alignment at Sc0000003:5640751..5643401+ (Branchiostoma lanceolatum)
AACTGCGGAGACCACAGGGACGGAGACCGATGGCAGCGTGATTCCTGTAC
CACCTGTACCTGTGTGTCTGGAGTTGAAGACTGTGTGACCCAGAGGTGTC
CCCCTGCCCCATGTCAGTATCCCAGGATTCCTGCTGGCAGGTGCTGCCCA
GAGTGCAAAGGTTGTGAGTATGAAGGCAGGAAGCTTAGGAATGGACAGAT
CTTTGATGCCGACAGATGCACAAGTTGTACCTGTCTGAGGGGTCAGGTGG
AATGTCGGAGGAGGGAATGTCCCGTCCTGCTGTGCCAGGATCAGTACACA
CCCCCTGGGGACTGCTGTCCTCGCTGTGAAGGAGGTTGTGAGTATGAAAT
GATGACATTTGACGACGGCACCTACTTCACCCCCATGTCCAACCCCTGCC
TCAACTGTTCCTGTCTGCAAGGCCTGGTGAGGTGTAACCCAGTCCCCTGT
CCTCCTGCCCAATGTTCAAACCCAGTCAAGCCTCTGGGAAGGTGCTGCCC
CATCTGTCCTGGCTCCCACTGTGTGGTCTGTCCTTTATCTCCATGTCATG
GCAACTGCGGAGACCACAGGGACGGAGACCGATGGCAGCGTGATTCCTGT
ACCACCTGTACCTGTGTGTCTGGAGTTGAAGACTGTGTGACCCAGAGGTG
TCCCCCTGCCCCATGTCAGTATCCCAGGATTCCTGCTGGCAGGTGCTGCC
CAGAGTGCAAAGGTTGTGAGTATGAAGGCAGGAAGCTTAGGAATGGACAG
ATCTTTGATGCCGACAGATGCACAAGTTGTACCTGTCTGAGGGGTCAGGT
GGAATGTCGGAGGAGGGAATGTCCCGTCCTGCTGTGCCAGGATCAGTACA
CACCCCCTGGGGACTGCTGTCCTCGCTGTGAAGGAGGTTGTGAGTATGAA
ATGATGACATTTGACGACGGCACCTACTTCACCCCCATGTCCAACCCCTG
CCTCAACTGTTCCTGTCTGCAAGGCCTGGTGAGGTGTAACCCAGTCCCCT
GTCCTCCTGCCCAATGTTCAAACCCAGTCAAGCCTCTGGGAAGGTGCTGC
CCCATCTGTCCTGGCTCCCACTGTGTGGTCTGTCCTTTATCTCCATGTCA
TGGCAACTGCGGAGACCACAGGGACGGAGACCGATGGCAGCGTGATTCCT
GTACCACCTGTACCTGTGTGTCTGGAGTTGAAGACTGTGTGACCCAGAGG
TGTCCCCCTGCCCCATGTCAGTATCCCAGGATTCCTGCTGGCAGGTGCTG
CCCAGAGTGCAAAGGTTGTGAGTATGAAGGCAGGAAGCTTAGGAATGGAC
AGATCTTTGATGCCGACAGATGCACAAGTTGTACCTGTCTGAGGGGTCAG
GTGGAATGTCGGAGGAGGGAATGTCCCGTCCTGCTGTGCCAGGATCAGTA
CACACCCCCTGGGGACTGCTGTCCTCGCTGTGAAGGAGGTTGTGAGTATG
AAATGATGACATTTGACGACGGCACCTACTTCACCCCCATGTCCAACCCC
TGCCTCAACTGTTCCTGTCTGCAAGGCCTGGTGAGGTGTAACCCAGTCCC
CTGTCCTCCTGCCCAATGTTCAAACCCAGTCAAGCCTCTGGGAAGGTGCT
GCCCCATCTGTCCTGGCTCCCACTGTGTGGTCTGTCCTTTATCTCCATGT
CATGGCAACTGCGGAGACCACAGGGACGGAGACCGATGGCAGCGTGATTC
CTGTACCACCTGTACCTGTGTGTCTGGAGTTGAAGACTGTGTGACCCAGA
GGTGTCCCCCTGCCCCATGTCAGTATCCCAGGATTCCTGCTGGCAGGTGC
TGCCCAGAGTGCAAAGGTTGTGAGTATGAAGGCAGGAAGCTTAGGAATGG
ACAGATCTTTGATGCCGACAGATGCACAAGTTGTACCTGTCTGAGGGGTC
AGGTGGAATGTCGGAGGAGGGAATGTCCCGTCCTGCTGTGCCAGGATCAG
TACACACCCCCTGGGGACTGCTGTCCTCGCTGTGAAGGAGGTTGTGAGTA
TGAAATGATGACATTTGACGACGGCACCTACTTCACCCCCATGTCCAACC
CCTGCCTCAACTGTTCCTGTCTGCAAGGCCTGGTGAGGTGTAACCCAGTC
CCCTGTCCTCCTGCCCAATGTTCAAACCCAGTCAAGCCTCTGGGAAGGTG
CTGCCCCATCTGTCCTGGCTCCCACTGTGTGGTCTGTCCTTTATCTCCAT
GTCATGGCAACTGCGGAGACCACAGGGACGGAGACCGATGGCAGCGTGAT
TCCTGTACCACCTGTACCTGTGTGTCTGGAGTTGAAGACTGTGTGACCCA
GAGGTGTCCCCCTGCCCCATGTCAGTATCCCAGGATTCCTGCTGGCAGGT
GCTGCCCAGAGTGCAAAGGTTGTGAGTATGAAGGCAGGAAGCTTAGGAAT
GGACAGATCTTTGATGCCGACAGATGCACAAGTTGTACCTGTCTGAGGGG
TCAGGTGGAATGTCGGAGGAGGGAATGTCCCGTCCTGCTGTGCCAGGATC
AGTACACACCCCCTGGGGACTGCTGTCCTCGCTGTGAAGGAGGTTGTGAG
TATGAAATGATGACATTTGACGACGGCACCTACTTCACCCCCATGTCCAA
CCCCTGCCTCAACTGTTCCTGTCTGCAAGGCCTGGTGAGGTGTAACCCAG
TCCCCTGTCCTCCTGCCCAATGTTCAAACCCAGTCAAGCCTCTGGGAAGG
TGCTGCCCCATCTGTCCTGGCTCCCACTGTGTGGTCTGTCCTTTATCTCC
ATGTCATGGCAACTGCGGAGACCACAGGGACGGAGACCGATGGCAGCGTG
ATTCCTGTACCACCTGTACCTGTGTGTCTGGAGTTGAAGACTGTGTGACC
CAGAGGTGTCCCCCTGCCCCATGTCAGTATCCCAGGATTCCTGCTGGCAG
GTGCTGCCCAGAGTGCAAAGGTTGTGAGTATGAAGGCAGGAAGCTTAGGA
ATGGACAGATCTTTGATGCCGACAGATGCACAAGTTGTACCTGTCTGAGG
GGTCAGGTGGAATGTCGGAGGAGGGAATGTCCCGTCCTGCTGTGCCAGGA
TCAGTACACACCCCCTGGGGACTGCTGTCCTCGCTGTGAAGGAGGTTGTG
AGTATGAAATGATGACATTTGACGACGGCACCTACTTCACCCCCATGTCC
AACCCCTGCCTCAACTGTTCCTGTCTGCAAGGCCTGGTGAGGTGTAACCC
AGTCCCCTGTCCTCCTGCCCAATGTTCAAACCCAGTCAAGCCTCTGGGAA
GGTGCTGCCCCATCTGTCCTGGCTCCCACTGTGTGGTCTGTCCTTTATCT
CCATGTCATGGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000003 | genome | Sc0000003:5640751..5643401 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96225_cuf4 |
| Biotype | protein_coding |
|
