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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96220_cuf1 >transcript:BL96220_cuf1-protein ID=transcript:BL96220_cuf1-protein|Name=transcript:BL96220_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=437bp
DMYPIILQDVIQDLMKEVGNEMAEEEKRIVLIVDELLEEITELMTEEEAT
STVLHAAARVMMEELLLDVTKTTAQEVAKCTVLHAAAGVVMEELLQEVTD
ATTKSIGLEEEKEWRLGQTVPDEYAKEFSYEVSATLTTVQSLDLLAGCNL
SIPPGATDVDTSVISAVLNPHGYDGKLKLREDELLVSDIIEMRPSGMTFS
EPVKLKIPHSLPKFDKEREYFVMTSEDDGRTWRRLKTLSGSDQHHMHVIV
EVTHFSAFAVGAKPLKHHQEVKEGKASTLKSSEQTGVEVSLPKGCVVGDK
KITFTVTPVDRETLACAGMEDSIENMSHVVNFFRGSNLLLNRPATIMLPL
SSEEDDSRIRVLSCNENGDWEDVTSRVEDVVLQGSKVAFKTDRLSSGFVV
LRCNDGTDVSGIVNLVTKNIRARRVRTVIFKKWKEPR Run BLAST on NCBI mRNA from alignment at Sc0000003:5742219..5745389+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96220_cuf1 ID=transcript:BL96220_cuf1|Name=transcript:BL96220_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3171bp|location=Sequence derived from alignment at Sc0000003:5742219..5745389+ (Branchiostoma lanceolatum)
GGACATGTACCCAATCATACTTCAAGACGTCATCCAAGATCTTATGAAGG
AAGTCGGCAATGAAATGGCAGAGGAAGAAAAGCGTATCGTGCTCATTGTT
GACGAGCTTTTGGAAGAAATTACGGAGCTGATGACGGAAGAAGAGGCTAC
AAGTACCGTGCTACATGCCGCGGCAAGGGTAATGATGGAAGAACTCCTGT
TGGACGTCACCAAGACAACGGCACAGGAAGTTGCTAAATGTACCGTGCTA
CATGCCGCGGCAGGAGTAGTGATGGAAGAGCTCCTGCAGGAGGTCACCGA
TGCAACGACAAAGTCGATCGGCTTAGAAGAGGAGAAAGAATGGCGCCTGG
GCCAGACTGTTCCAGATGAATACGCCAAAGAGTTTAGGTAAATGTCAAAA
TTGTGTTTTAACTTCATGGCAGTTTTAGACATACACTTGGGTAGCTAATA
ATAGAGTGCTAAATGTTTATGATTACAAATAAGTTTCATGCAATAGATTT
TAAAGTGATAATTGATTCTCTACAACAGCTACGAAGTATCGGCAACCCTG
ACCACCGTGCAGTCCTTGGACCTCCTTGCCGGCTGCAACCTGAGCATCCC
GCCCGGAGCAACAGATGTAGATACATCCGTCATCTCAGCAGTGCTGAACC
CACACGGGTACGACGGGAAACTCAAGCTACGAGAAGACGAACTTCTAGTC
AGCGACATCATCGAGATGAGACCATCGGGAATGACGTTCTCCGAGCCCGT
AAAACTGAAGATCCCCCACTCCCTACCCAAGTTCGACAAAGAACGGGAAT
ACTTTGTGATGACGTCTGAAGATGACGGGAGAACTTGGAGGAGATTGAAG
ACACTGAGTGGATCAGATCAAGTAGGTGATACTTTTTACTATAGAAGTCT
CTGTACTAGATTTTGTTTATATTTCATGATTGAAAACATGGAGGCCCAAA
TATGGAATAGCTAAGTTTTCACGTGTTTGTCAACAAACTCAACATGTACT
TCTCATGCCTCTCCAGCACCATATGCATGTGATCGTTGAAGTAACACACT
TCTCCGCGTTCGCCGTTGGTGCGAAGCCATTGAAGCACCATCAAGAGGTC
AAAGAAGGGAAAGCTTCAACGCTGAAGTCATCGGAGCAAACAGGGGTTGA
GGTATCCCTACCCAAGGGCTGTGTCGTTGGAGACAAAAAGATCACATTTA
CAGTGAGTTAACATTTAAGTCTTTATTACCTTCGCCGAGAAGTTTATGTT
TTGAACAGCGTTCGCGTGTGTGTGTGTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGTGTGTGTCTGTCTGTCTGCCTGCCTGCCTGTAAAC
AAGAAAACTCGAGAATGCCTGAATGGATTGTCTTCATACTTAGTAGGTGG
GTAGGTTTTGGTGAGACCTCAAGATGATAAAATTTGGCCCCATAGCGGCT
TGCTATAGTGCTGCGGTGGAACGTTGTGATATCTCGTGTTCTGGACATGC
TATGGTCATGATTTTTTTGGGGAAAGATAGCTCTTTGGAGGGAGGGTAAG
TCATGCAGGTTTTGGACCACTGGCGGCTTTTGAAACTGCAGGAGCCGATT
TCGTTTTAAACTTTAAAAGAGAAGAACTCAAGAAGGGGTTGACGAATCTT
CAGGACATTTGGTGTGTAGATAGCTTGAGTAATGATTGACAAAACCATGT
TTATTATGCAAATCCGGAGCTGATTTGTTTATAAATTTGCTGCATTCCAT
TATAGGACTCTCAAACATGTGACATGTGCAAGTGAGAAAGAGAAGAATAT
CGATAGATATCAATTATGCAAATATTATATTATCTATAATTACATGGTGG
TAAATGATGGGGATTTTATTCTTGCATTTCTCAGCATTTCGAAGTTAAGT
AAATGTGGAAATGATCAGACATAAATCATGCAAATGAGGCTCTCATTTAC
ACAATTTAAAAGGAAATGCTTTTTTTGTCCAACAAAGGTCACACCAGTCG
ACAGAGAGACACTTGCCTGTGCTGGGATGGAGGATTCAATAGAAAACATG
AGTCACGTTGTCAACTTCTTCAGAGGCAGCAACCTGCTGTTGAACCGTCC
AGCTACCATTATGCTACCGCTGTCGTCTGAGGAAGACGACAGCCGAATCC
GCGTCCTCAGCTGCAATGAGAACGGGGACTGGGAAGACGTCACAAGTAGA
GTGGAGGATGTCGTCCTACAGGGATCAAAGGTTGCTTTTAAGACAGACCG
GCTCAGTTCCGGGTAAGTAGCTAGACACTATTGAGTCTTCAAAGAAGCCA
TATGTAAATCTAAAAGTAAACGGAAGTGGTTGGCATGCAACTTTGTCTTA
GTCACAGTATTTTGTTGATGACGTTACATTTTAGAGAGAAGTGCCACCTG
GGACAATATACACACTAAACGTAAAATAAGCTAATTGAAGGAACATGATA
AGTGACGTAATAATTCATTCCCTGCCTGGCTATCATTCTTTGCATTCCAG
GTTTGTCGTACTTCGCTGCAATGACGGAACAGATGTTAGCGGAATCGTCA
ACCTGGTTACCAAAAACATCCGTGCCCGACGCGTCAGGACTGTCATCTTC
AAGAAGTGGAAGGAACCCCGG Coding sequence (CDS) from alignment at Sc0000003:5742219..5745389+ >transcript:BL96220_cuf1 ID=transcript:BL96220_cuf1|Name=transcript:BL96220_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=6555bp|location=Sequence derived from alignment at Sc0000003:5742219..5745389+ (Branchiostoma lanceolatum)
GACATGTACCCAATCATACTTCAAGACGTCATCCAAGATCTTATGAAGGA
AGTCGGCAATGAAATGGCAGAGGAAGAAAAGCGTATCGTGCTCATTGTTG
ACGAGCTTTTGGAAGAAATTACGGAGCTGATGACGGAAGAAGAGGCTACA
AGTACCGTGCTACATGCCGCGGCAAGGGTAATGATGGAAGAACTCCTGTT
GGACGTCACCAAGACAACGGCACAGGAAGTTGCTAAATGTACCGTGCTAC
ATGCCGCGGCAGGAGTAGTGATGGAAGAGCTCCTGCAGGAGGTCACCGAT
GCAACGACAAAGTCGATCGGCTTAGAAGAGGAGAAAGAATGGCGCCTGGG
CCAGACTGTTCCAGATGAATACGCCAAAGAGTTTAGCTACGAAGTATCGG
CAACCCTGACCACCGTGCAGTCCTTGGACCTCCTTGCCGGCTGCAACCTG
AGCATCCCGCCCGGAGCAACAGATGTAGATACATCCGTCATCTCAGCAGT
GCTGAACCCACACGGGTACGACGGGAAACTCAAGCTACGAGAAGACGAAC
TTCTAGTCAGCGACATCATCGAGATGAGACCATCGGGAATGACGTTCTCC
GAGCCCGTAAAACTGAAGATCCCCCACTCCCTACCCAAGTTCGACAAAGA
ACGGGAATACTTTGTGATGACGTCTGAAGATGACGGGAGAACTTGGAGGA
GATTGAAGACACTGAGTGGATCAGATCAACACCATATGCATGTGATCGTT
GAAGTAACACACTTCTCCGCGTTCGCCGTTGGTGCGAAGCCATTGAAGCA
CCATCAAGAGGTCAAAGAAGGGAAAGCTTCAACGCTGAAGTCATCGGAGC
AAACAGGGGTTGAGGTATCCCTACCCAAGGGCTGTGTCGTTGGAGACAAA
AAGATCACATTTACAGTCACACCAGTCGACAGAGAGACACTTGCCTGTGC
TGGGATGGAGGATTCAATAGAAAACATGAGTCACGTTGTCAACTTCTTCA
GAGGCAGCAACCTGCTGTTGAACCGTCCAGCTACCATTATGCTACCGCTG
TCGTCTGAGGAAGACGACAGCCGAATCCGCGTCCTCAGCTGCAATGAGAA
CGGGGACTGGGAAGACGTCACAAGTAGAGTGGAGGATGTCGTCCTACAGG
GATCAAAGGTTGCTTTTAAGACAGACCGGCTCAGTTCCGGGTTTGTCGTA
CTTCGCTGCAATGACGGAACAGATGTTAGCGGAATCGTCAACCTGGTTAC
CAAAAACATCCGTGCCCGACGCGTCAGGACTGTCATCTTCAAGAAGTGGA
AGGAACCCCGGGACATGTACCCAATCATACTTCAAGACGTCATCCAAGAT
CTTATGAAGGAAGTCGGCAATGAAATGGCAGAGGAAGAAAAGCGTATCGT
GCTCATTGTTGACGAGCTTTTGGAAGAAATTACGGAGCTGATGACGGAAG
AAGAGGCTACAAGTACCGTGCTACATGCCGCGGCAAGGGTAATGATGGAA
GAACTCCTGTTGGACGTCACCAAGACAACGGCACAGGAAGTTGCTAAATG
TACCGTGCTACATGCCGCGGCAGGAGTAGTGATGGAAGAGCTCCTGCAGG
AGGTCACCGATGCAACGACAAAGTCGATCGGCTTAGAAGAGGAGAAAGAA
TGGCGCCTGGGCCAGACTGTTCCAGATGAATACGCCAAAGAGTTTAGCTA
CGAAGTATCGGCAACCCTGACCACCGTGCAGTCCTTGGACCTCCTTGCCG
GCTGCAACCTGAGCATCCCGCCCGGAGCAACAGATGTAGATACATCCGTC
ATCTCAGCAGTGCTGAACCCACACGGGTACGACGGGAAACTCAAGCTACG
AGAAGACGAACTTCTAGTCAGCGACATCATCGAGATGAGACCATCGGGAA
TGACGTTCTCCGAGCCCGTAAAACTGAAGATCCCCCACTCCCTACCCAAG
TTCGACAAAGAACGGGAATACTTTGTGATGACGTCTGAAGATGACGGGAG
AACTTGGAGGAGATTGAAGACACTGAGTGGATCAGATCAACACCATATGC
ATGTGATCGTTGAAGTAACACACTTCTCCGCGTTCGCCGTTGGTGCGAAG
CCATTGAAGCACCATCAAGAGGTCAAAGAAGGGAAAGCTTCAACGCTGAA
GTCATCGGAGCAAACAGGGGTTGAGGTATCCCTACCCAAGGGCTGTGTCG
TTGGAGACAAAAAGATCACATTTACAGTCACACCAGTCGACAGAGAGACA
CTTGCCTGTGCTGGGATGGAGGATTCAATAGAAAACATGAGTCACGTTGT
CAACTTCTTCAGAGGCAGCAACCTGCTGTTGAACCGTCCAGCTACCATTA
TGCTACCGCTGTCGTCTGAGGAAGACGACAGCCGAATCCGCGTCCTCAGC
TGCAATGAGAACGGGGACTGGGAAGACGTCACAAGTAGAGTGGAGGATGT
CGTCCTACAGGGATCAAAGGTTGCTTTTAAGACAGACCGGCTCAGTTCCG
GGTTTGTCGTACTTCGCTGCAATGACGGAACAGATGTTAGCGGAATCGTC
AACCTGGTTACCAAAAACATCCGTGCCCGACGCGTCAGGACTGTCATCTT
CAAGAAGTGGAAGGAACCCCGGGACATGTACCCAATCATACTTCAAGACG
TCATCCAAGATCTTATGAAGGAAGTCGGCAATGAAATGGCAGAGGAAGAA
AAGCGTATCGTGCTCATTGTTGACGAGCTTTTGGAAGAAATTACGGAGCT
GATGACGGAAGAAGAGGCTACAAGTACCGTGCTACATGCCGCGGCAAGGG
TAATGATGGAAGAACTCCTGTTGGACGTCACCAAGACAACGGCACAGGAA
GTTGCTAAATGTACCGTGCTACATGCCGCGGCAGGAGTAGTGATGGAAGA
GCTCCTGCAGGAGGTCACCGATGCAACGACAAAGTCGATCGGCTTAGAAG
AGGAGAAAGAATGGCGCCTGGGCCAGACTGTTCCAGATGAATACGCCAAA
GAGTTTAGCTACGAAGTATCGGCAACCCTGACCACCGTGCAGTCCTTGGA
CCTCCTTGCCGGCTGCAACCTGAGCATCCCGCCCGGAGCAACAGATGTAG
ATACATCCGTCATCTCAGCAGTGCTGAACCCACACGGGTACGACGGGAAA
CTCAAGCTACGAGAAGACGAACTTCTAGTCAGCGACATCATCGAGATGAG
ACCATCGGGAATGACGTTCTCCGAGCCCGTAAAACTGAAGATCCCCCACT
CCCTACCCAAGTTCGACAAAGAACGGGAATACTTTGTGATGACGTCTGAA
GATGACGGGAGAACTTGGAGGAGATTGAAGACACTGAGTGGATCAGATCA
ACACCATATGCATGTGATCGTTGAAGTAACACACTTCTCCGCGTTCGCCG
TTGGTGCGAAGCCATTGAAGCACCATCAAGAGGTCAAAGAAGGGAAAGCT
TCAACGCTGAAGTCATCGGAGCAAACAGGGGTTGAGGTATCCCTACCCAA
GGGCTGTGTCGTTGGAGACAAAAAGATCACATTTACAGTCACACCAGTCG
ACAGAGAGACACTTGCCTGTGCTGGGATGGAGGATTCAATAGAAAACATG
AGTCACGTTGTCAACTTCTTCAGAGGCAGCAACCTGCTGTTGAACCGTCC
AGCTACCATTATGCTACCGCTGTCGTCTGAGGAAGACGACAGCCGAATCC
GCGTCCTCAGCTGCAATGAGAACGGGGACTGGGAAGACGTCACAAGTAGA
GTGGAGGATGTCGTCCTACAGGGATCAAAGGTTGCTTTTAAGACAGACCG
GCTCAGTTCCGGGTTTGTCGTACTTCGCTGCAATGACGGAACAGATGTTA
GCGGAATCGTCAACCTGGTTACCAAAAACATCCGTGCCCGACGCGTCAGG
ACTGTCATCTTCAAGAAGTGGAAGGAACCCCGGGACATGTACCCAATCAT
ACTTCAAGACGTCATCCAAGATCTTATGAAGGAAGTCGGCAATGAAATGG
CAGAGGAAGAAAAGCGTATCGTGCTCATTGTTGACGAGCTTTTGGAAGAA
ATTACGGAGCTGATGACGGAAGAAGAGGCTACAAGTACCGTGCTACATGC
CGCGGCAAGGGTAATGATGGAAGAACTCCTGTTGGACGTCACCAAGACAA
CGGCACAGGAAGTTGCTAAATGTACCGTGCTACATGCCGCGGCAGGAGTA
GTGATGGAAGAGCTCCTGCAGGAGGTCACCGATGCAACGACAAAGTCGAT
CGGCTTAGAAGAGGAGAAAGAATGGCGCCTGGGCCAGACTGTTCCAGATG
AATACGCCAAAGAGTTTAGCTACGAAGTATCGGCAACCCTGACCACCGTG
CAGTCCTTGGACCTCCTTGCCGGCTGCAACCTGAGCATCCCGCCCGGAGC
AACAGATGTAGATACATCCGTCATCTCAGCAGTGCTGAACCCACACGGGT
ACGACGGGAAACTCAAGCTACGAGAAGACGAACTTCTAGTCAGCGACATC
ATCGAGATGAGACCATCGGGAATGACGTTCTCCGAGCCCGTAAAACTGAA
GATCCCCCACTCCCTACCCAAGTTCGACAAAGAACGGGAATACTTTGTGA
TGACGTCTGAAGATGACGGGAGAACTTGGAGGAGATTGAAGACACTGAGT
GGATCAGATCAACACCATATGCATGTGATCGTTGAAGTAACACACTTCTC
CGCGTTCGCCGTTGGTGCGAAGCCATTGAAGCACCATCAAGAGGTCAAAG
AAGGGAAAGCTTCAACGCTGAAGTCATCGGAGCAAACAGGGGTTGAGGTA
TCCCTACCCAAGGGCTGTGTCGTTGGAGACAAAAAGATCACATTTACAGT
CACACCAGTCGACAGAGAGACACTTGCCTGTGCTGGGATGGAGGATTCAA
TAGAAAACATGAGTCACGTTGTCAACTTCTTCAGAGGCAGCAACCTGCTG
TTGAACCGTCCAGCTACCATTATGCTACCGCTGTCGTCTGAGGAAGACGA
CAGCCGAATCCGCGTCCTCAGCTGCAATGAGAACGGGGACTGGGAAGACG
TCACAAGTAGAGTGGAGGATGTCGTCCTACAGGGATCAAAGGTTGCTTTT
AAGACAGACCGGCTCAGTTCCGGGTTTGTCGTACTTCGCTGCAATGACGG
AACAGATGTTAGCGGAATCGTCAACCTGGTTACCAAAAACATCCGTGCCC
GACGCGTCAGGACTGTCATCTTCAAGAAGTGGAAGGAACCCCGGGACATG
TACCCAATCATACTTCAAGACGTCATCCAAGATCTTATGAAGGAAGTCGG
CAATGAAATGGCAGAGGAAGAAAAGCGTATCGTGCTCATTGTTGACGAGC
TTTTGGAAGAAATTACGGAGCTGATGACGGAAGAAGAGGCTACAAGTACC
GTGCTACATGCCGCGGCAAGGGTAATGATGGAAGAACTCCTGTTGGACGT
CACCAAGACAACGGCACAGGAAGTTGCTAAATGTACCGTGCTACATGCCG
CGGCAGGAGTAGTGATGGAAGAGCTCCTGCAGGAGGTCACCGATGCAACG
ACAAAGTCGATCGGCTTAGAAGAGGAGAAAGAATGGCGCCTGGGCCAGAC
TGTTCCAGATGAATACGCCAAAGAGTTTAGCTACGAAGTATCGGCAACCC
TGACCACCGTGCAGTCCTTGGACCTCCTTGCCGGCTGCAACCTGAGCATC
CCGCCCGGAGCAACAGATGTAGATACATCCGTCATCTCAGCAGTGCTGAA
CCCACACGGGTACGACGGGAAACTCAAGCTACGAGAAGACGAACTTCTAG
TCAGCGACATCATCGAGATGAGACCATCGGGAATGACGTTCTCCGAGCCC
GTAAAACTGAAGATCCCCCACTCCCTACCCAAGTTCGACAAAGAACGGGA
ATACTTTGTGATGACGTCTGAAGATGACGGGAGAACTTGGAGGAGATTGA
AGACACTGAGTGGATCAGATCAACACCATATGCATGTGATCGTTGAAGTA
ACACACTTCTCCGCGTTCGCCGTTGGTGCGAAGCCATTGAAGCACCATCA
AGAGGTCAAAGAAGGGAAAGCTTCAACGCTGAAGTCATCGGAGCAAACAG
GGGTTGAGGTATCCCTACCCAAGGGCTGTGTCGTTGGAGACAAAAAGATC
ACATTTACAGTCACACCAGTCGACAGAGAGACACTTGCCTGTGCTGGGAT
GGAGGATTCAATAGAAAACATGAGTCACGTTGTCAACTTCTTCAGAGGCA
GCAACCTGCTGTTGAACCGTCCAGCTACCATTATGCTACCGCTGTCGTCT
GAGGAAGACGACAGCCGAATCCGCGTCCTCAGCTGCAATGAGAACGGGGA
CTGGGAAGACGTCACAAGTAGAGTGGAGGATGTCGTCCTACAGGGATCAA
AGGTTGCTTTTAAGACAGACCGGCTCAGTTCCGGGTTTGTCGTACTTCGC
TGCAATGACGGAACAGATGTTAGCGGAATCGTCAACCTGGTTACCAAAAA
CATCCGTGCCCGACGCGTCAGGACTGTCATCTTCAAGAAGTGGAAGGAAC
CCCGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000003 | genome | Sc0000003:5742219..5745389 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96220_cuf1 |
| Biotype | protein_coding |
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