|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96213_cuf4 >transcript:BL96213_cuf4-protein ID=transcript:BL96213_cuf4-protein|Name=transcript:BL96213_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=138bp
APAKVSEKEETPVRGKATGDNEVEAIVSQASHLQLSPPAATRDSAEPHGN
KLANRKLQLSPEQGRKSSKRERKSRYTSHDNMDISSPKTRGRKRVFSQAN
KDDEFEISCSQDTEHTQTQPTRSSKRRKASVTERAIMV Run BLAST on NCBI mRNA from alignment at Sc0000003:4994054..4996995+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96213_cuf4 ID=transcript:BL96213_cuf4|Name=transcript:BL96213_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=2942bp|location=Sequence derived from alignment at Sc0000003:4994054..4996995+ (Branchiostoma lanceolatum)
TGCTCCTGCCAAGGTGTCGGAGAAGGAGGAGACTCCTGTGAGAGGAAAGG
CCACAGGAGATAATGAGGTAAACCTAAAAACTTTTTGAACAGGTAGTAGG
TGTGTTAGTGGATTCAATCTTCAGCTGACCGACACCTTTCACACCACAGT
CATCCCTCAGTAAGTCATTTGAAGCAGTATAGTTAGCCGTTTAGAACTTT
ATTCAGCCTGTCACCCAGACTGTTTTCCCCAATGTTTTTGAACAGATGCT
TTACCATCTTTCCGTCTTCATTGTAATGCAATGAATTAGCCAATACTCAG
CTCTGTCCTTGGTCTGTACAACATCTGTCCTTGGTGCTGATTGGTCTGCA
CAACTGTCAACATCTGTCCTTGGTGCTGATTGGTCTGCATAGCCTCTGTC
CTTGGTGCTGATTGGTCTGCATAACCTCTCTCCTTGGTGCTGATTGGTCT
GCAAAGCCTCTGTCCTTGGTGCTGATTGGACTGCACAACATCTGTTCTTG
GTGCTGATTGGTCTGCATAACCTCTGTCCTTAGTGCTGATTGGTCTGCAT
AGCATCTGTCCTTGGTGCTGATTGGTGTCTGTGGAGTTGACCAATTAGCA
CACTTGCAAAAGTTGGGAAACTTGGCATTCTAATCCGTGTATTTTGACAC
TTTTCCTTTGAAATAAGAAACATCTATCCTGAAATTCATCTGTTCCAACA
GTATGGATTTGCTGCTTTAGGAAAATGTCTTTTTCTTCATTGTTTTTTTT
AATATAGACCTGCTGAAATGAAGAAATTCACCCTTGTTGTTTGTCCTGGG
TATTTAGATGAAATAAAGCTACATTTCCTGCCCTACAGGTTGATGTGTTT
AGTTTTCTAGGTTGATGTAGTGTTAGAACATTCCATATTCAAAACAAGTT
TGATAAAGACTAATTTTTTTTAAATCTAGCCCTGGGGTATTGCAAAATTT
ACTTTGTTTTTATCCTCACTGTCGGAAACTATAAGCCTGTGTTTACTGCA
TTTTCCCCACAGGTTGAAGCGATAGTGTCGCAGGCATCCCACCTGCAGCT
GTCTCCCCCTGCTGCCACCAGGGACTCAGCAGAGCCGCACGGGAACAAAC
TGGCCAACCGCAAACTGCAGCTCAGCCCGGTACGTTTATCCCTTCCCACT
CTTACCGACATGGGAGTATCAAATACAAACTTAGGACTGCATTCTATATC
TGATAATTGTTTAGCGTCTTATTATTGTAGCTTGTACATACATACGTGAC
TGGTATACATACATACTGAAGACTTCAGGAAAGTAGCCAGGAAGAGATTT
TAATTCTACATGAAACTGGAAGAAAGGACTGAAGAGTCTGAATGTCCAGA
ACTTTGTTCAAGGACCAATTTTCGTATCAGATACTCACAGAGTTCATATT
AACATTCAGCATGCTAAGGTAGCTGTTTGGCACCAAATACGTATTTGCTA
ATGCTATGGGGTTATTCAGCAGGAAGTAGGTTAAGGTTGATAAAACTGTC
AGTTCTATTCAAAGAAGCTTAGCTAGAGAAACTTTCAATAAGTCGTGAAG
AACTTGTGGTTTCAAAATTGAACATGTTGATGATTGTGTTGTGTTCTACA
GGAACAAGGTAGAAAGTCCAGTAAAAGGGAGCGAAAGAGCAGATACACCT
CCCACGACAATATGGACATCTCCTCTCCTAAAACACGGGGCAGAAAGAGA
GTCTTCTCCCAGGCCAACAAGGTACTGTGAACTTATTTTGCTTTTGCAGT
ATTTTAAATCAGCAGTTGAAATAATTCTGTAGTACAGCAATCACACTAGG
GAGACACATTCCCAGTGTCAGGACTTCATGGCGAAAACTGAAAAATAAAA
CTGTGGTAAATGTTTCAAGATCGACAGTATTATATGCTCTTGGCTATGAC
CTGTTTGTTGTGGGTTTGTTGCAGTGATGCTGCATTTGTGAAAACCTGTT
TTTGTTGAGAGATCTGTTATGATACAGTTTGTACAAGTCCCTTTGGATCT
GCCATCTCCTCACCAAAAATGATTTGATTCAATATAAATGCCAGGGTATA
ACTTGATAGCCTTTGCCAAGGTAGTAAGGTATTGAATTTGTAAATAAGCA
GCATTTTGATTTTCAAGTTGTTTTGTTGCTTTTGTAGGATGATGAGTTTG
AGATCAGCTGTAGTCAGGACACCGAGCACACCCAGACACAGCCCACAAGG
AGCAGCAAACGACGCAAGGCCAGCGTCACCGAGAGGGCCATCATGGTGTG
ATGCCACCTGGAATAACAGTGAAGAACTGCAGTTTAATAGCACATAAAAG
GCAAAGCCATGCTCCCCTTAATGCCCTTTGGTGGTATGCATAAGCACAGC
CTCTTTGATAAACGCTGGAAGATTGAGATGAATCTTGAAAAACTCTTCAC
ATTGAACATTGTTTGTTGCTGTTTCGTAGCAGTTGTATTGCCATGCTCAT
TCAACTTAGTTGAACAGTCGACAAAGAAGAAATACTCATTTGACATGAAT
TAAGCATAATGACTTAAGATCACTTTGTTAGTAAAGTTTACGTTGAATGC
CTTGCATAGTCTGTTAAGGAAAGAGTTTGTTGTTCATAATCAGTAGCTAC
ACAACATGCCAATACCTCAGTGGAAGGCCCATGCTAAGTTAAACAAGCAC
TTGACCAATTATGTTAATATAATGTTGTAAATATTTCTGTTCTTGGATCT
TCTCGTTCTCGGCGTGGCATGGACCAGTAATCTATTTATTAGTCTAAGAA
TGTTAGCACTTAGCTTTGTAAACATGTTACATGTTGCATTTTAATTTATG
ATGATCTAAACTATCAAGTTGTCCTAACTTATAAAAAAAATCAACATAAA
AGTTGATGATGTAGAAATGATTTTATATTTGAGAAAGGATCGTTAAGCCT
ATGGAAACTTACAAAGTTCTGATTAAAACTGTTTGTTGAAAA Coding sequence (CDS) from alignment at Sc0000003:4994054..4996995+ >transcript:BL96213_cuf4 ID=transcript:BL96213_cuf4|Name=transcript:BL96213_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=1668bp|location=Sequence derived from alignment at Sc0000003:4994054..4996995+ (Branchiostoma lanceolatum)
GCTCCTGCCAAGGTGTCGGAGAAGGAGGAGACTCCTGTGAGAGGAAAGGC
CACAGGAGATAATGAGGTTGAAGCGATAGTGTCGCAGGCATCCCACCTGC
AGCTGTCTCCCCCTGCTGCCACCAGGGACTCAGCAGAGCCGCACGGGAAC
AAACTGGCCAACCGCAAACTGCAGCTCAGCCCGGAACAAGGTAGAAAGTC
CAGTAAAAGGGAGCGAAAGAGCAGATACACCTCCCACGACAATATGGACA
TCTCCTCTCCTAAAACACGGGGCAGAAAGAGAGTCTTCTCCCAGGCCAAC
AAGGATGATGAGTTTGAGATCAGCTGTAGTCAGGACACCGAGCACACCCA
GACACAGCCCACAAGGAGCAGCAAACGACGCAAGGCCAGCGTCACCGAGA
GGGCCATCATGGTGTGAGCTCCTGCCAAGGTGTCGGAGAAGGAGGAGACT
CCTGTGAGAGGAAAGGCCACAGGAGATAATGAGGTTGAAGCGATAGTGTC
GCAGGCATCCCACCTGCAGCTGTCTCCCCCTGCTGCCACCAGGGACTCAG
CAGAGCCGCACGGGAACAAACTGGCCAACCGCAAACTGCAGCTCAGCCCG
GAACAAGGTAGAAAGTCCAGTAAAAGGGAGCGAAAGAGCAGATACACCTC
CCACGACAATATGGACATCTCCTCTCCTAAAACACGGGGCAGAAAGAGAG
TCTTCTCCCAGGCCAACAAGGATGATGAGTTTGAGATCAGCTGTAGTCAG
GACACCGAGCACACCCAGACACAGCCCACAAGGAGCAGCAAACGACGCAA
GGCCAGCGTCACCGAGAGGGCCATCATGGTGTGAGCTCCTGCCAAGGTGT
CGGAGAAGGAGGAGACTCCTGTGAGAGGAAAGGCCACAGGAGATAATGAG
GTTGAAGCGATAGTGTCGCAGGCATCCCACCTGCAGCTGTCTCCCCCTGC
TGCCACCAGGGACTCAGCAGAGCCGCACGGGAACAAACTGGCCAACCGCA
AACTGCAGCTCAGCCCGGAACAAGGTAGAAAGTCCAGTAAAAGGGAGCGA
AAGAGCAGATACACCTCCCACGACAATATGGACATCTCCTCTCCTAAAAC
ACGGGGCAGAAAGAGAGTCTTCTCCCAGGCCAACAAGGATGATGAGTTTG
AGATCAGCTGTAGTCAGGACACCGAGCACACCCAGACACAGCCCACAAGG
AGCAGCAAACGACGCAAGGCCAGCGTCACCGAGAGGGCCATCATGGTGTG
AGCTCCTGCCAAGGTGTCGGAGAAGGAGGAGACTCCTGTGAGAGGAAAGG
CCACAGGAGATAATGAGGTTGAAGCGATAGTGTCGCAGGCATCCCACCTG
CAGCTGTCTCCCCCTGCTGCCACCAGGGACTCAGCAGAGCCGCACGGGAA
CAAACTGGCCAACCGCAAACTGCAGCTCAGCCCGGAACAAGGTAGAAAGT
CCAGTAAAAGGGAGCGAAAGAGCAGATACACCTCCCACGACAATATGGAC
ATCTCCTCTCCTAAAACACGGGGCAGAAAGAGAGTCTTCTCCCAGGCCAA
CAAGGATGATGAGTTTGAGATCAGCTGTAGTCAGGACACCGAGCACACCC
AGACACAGCCCACAAGGAGCAGCAAACGACGCAAGGCCAGCGTCACCGAG
AGGGCCATCATGGTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000003 | genome | Sc0000003:4994054..4996995 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96213_cuf4 |
| Biotype | protein_coding |
|
