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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96193_cuf5 >transcript:BL96193_cuf5-protein ID=transcript:BL96193_cuf5-protein|Name=transcript:BL96193_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=206bp
FRSMAVYSDVFASFLAILVFVMTLQFLQLLGFNRLIGALFHTLSNAGRKI
AMFALLIFILITAYSTAGALLFGRWNRDYSSFPSAVRSQLLMIFQTVSYH
RIILSHPVVGRLFFFSYVVIAMTIVLNVFVSILDDELRTSKRDPCGLGGD
TDMGEFMIDRFLQFLGVETRQRATKVDDKTHTDYIDVQLKELEEKLDLVL
EKAGSI Run BLAST on NCBI mRNA from alignment at Sc0000086:1171752..1174072+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96193_cuf5 ID=transcript:BL96193_cuf5|Name=transcript:BL96193_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=2321bp|location=Sequence derived from alignment at Sc0000086:1171752..1174072+ (Branchiostoma lanceolatum)
GCTTCCGTTCCATGGCCGTCTACTCGGACGTTTTCGCTTCGTTCCTGGCC
ATCCTCGTGTTCGTCATGACCTTACAGTTCCTGCAGCTGCTGGGCTTCAA
CCGTCTCATCGGAGCCCTGTTCCACACACTGAGCAACGCAGGCAGGAAGA
TCGCGATGTTTGCTTTACTCATATTCATTCTGATCACCGGTAAGCATCCT
TGATAATCATTTGATTTAAATGGACAGGTTTTCTTTGGCATGAGTTCTAA
ACGGAGAAGAACCGTGATTCGTCAGCAGACCATTTACGGAGCGGTCGAAA
AGGGACACTGACGGTCCGAGAAACAGAGGAAGGTTGATTACTAGTCTTCA
GCTTGACACTGCATTTCGCACTCTGGTTCTTTTGCAACGCATTTCTTTGT
TAATGTTGTCTATACTTGGCAAGCGGTGCCACTGGATTCTTTCTTTTCCG
ATTTTGTTTGTACGTTGTCTTGGTTCTGTTTTCTGACATTTTTGCTATGT
ATTTCTTCGTTGACGTAGTCTATATCTAGCAAGCAGTACAATTGGAGTTC
TTCTTTTCCAATGTTTGAAGCGACAAAACCTTAAAGTTTTCAGCTTGACA
CTGTTTTTTCTGGACTCTGGCTACCTTTGCTGTATATGTCTGCACCTAGC
ATACAGTACCGCTGGAGCCCTCCTTTTCGGACGTTGGAACCGCGACTACA
GCAGCTTTCCCTCAGCCGTCCGCTCACAGCTGCTCATGATCTTCCAGACC
GTCTCCTACCACAGGATCATCTTAAGTCATCCTGTCGTGGGACGACTGTT
CTTCTTCAGGTAATGAAAACGTTTACTGACTGACAAAATGAATATGAATG
AAATCAACAGAATATTGCTTATCTATCTATCTATCGATTCATTCAGGCAT
ATGGTTTTCATTTCTTAGTAACCCCTTGGCACTATGATAGTCTAACTTGA
AATAAAGCACATTTTCCACTGGATTTAAACCGTTGAGCGACACAAACTAC
GTTTTCATGACCTATGATTTTATATAATGAACTTAATTCATGATATACAA
GTATGGGCTTTTTTAACACAAAAAAATTACAAAATACACTTCTTTATTAA
TAAGATTTGCTTAAAATATTAATGAGATTTTTGGTCGCTCAATGTTCACG
GCTCAGTAAGTGGGTATATTGTAGAAAATAAACTCACGGGAACATGGTTA
CTGGTTGTGCCTTCTGCAAATAGTTTCTTCGGTTTAGATTGGTTAATACT
ATCAACATTGGCTGTCATGTTGTGTGAAGAAGTTTAAACACATGGACATA
GTCTAAATATGGTTTGGTTGCAGCTACGTGGTCATCGCCATGACCATCGT
CCTGAACGTGTTCGTGTCCATCCTGGACGATGAGCTGCGGACGTCCAAGC
GGGATCCGTGCGGCCTGGGCGGGGACACGGACATGGGGGAGTTCATGATA
GACAGATTCCTCCAGTTCCTGGGAGTCGAAACTCGACAAAGAGCTACTAA
AGGTAACCCTGTGCACATCTGTTTATGTAGTGGGCTATGACATTAGGTCA
TATATTCCATTTATTGTAAGTCATATTTACGTTGTACTTTCGTCTCTACT
TTTGTGGGTCAGTCGTTACCAGCGAGAGCTGCTTTGGATGACCCAGTGTA
ATGAATTGTCTAATTCTCAATAGAACAAAAATATATGATTTTATATTCTA
TTGATTACAATTTGGCAGTTGTTTATTGTTGCTATTTAACCAGCTTTTGA
AAAATACACTTCTTCTCAAGCCGTTGTGCTGGGTTCCAAATTGTTCGCCA
TGTTCACTCTGACGTCAGTGACAATCATAACCAAATATTGGTGCCATACA
GTTCAAGCCTTTATCTAAGAACACTGTCTATTGAGGTATAGTGAATCCCC
TGTCCTATCTGATGAACTATCTTTGGGACCCTGAAAGTAACTATCAACTA
AATGTATACACTGCATCCCATTGACCAAATACCAATTGATTGTTACACCC
CTCTAGTCGATGACAAGACACATACAGACTACATAGATGTGCAGCTGAAA
GAACTGGAGGAAAAACTGGACCTGGTGCTGGAGAAGGCGGGCTCTATATA
GTTTAAGAGGACAACTGGATAACACATAAGTACAAATTAACAAAGTAGGA
ATGGCATGTCCTTTTTCATGGCCAATTCTCCCTCTCATAGCTTACCTTCA
AAACCCATTGATTCTGTATCTCAACTACTTGTAAAAACAGGTGTATTCTA
GTTTCTAGGGTTGGAATTTCTGATAAAAATGTTGTGATCATCCTGTTATT
GTTCTGCAAAATAATCAAAAA Coding sequence (CDS) from alignment at Sc0000086:1171752..1174072+ >transcript:BL96193_cuf5 ID=transcript:BL96193_cuf5|Name=transcript:BL96193_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=2484bp|location=Sequence derived from alignment at Sc0000086:1171752..1174072+ (Branchiostoma lanceolatum)
TTCCGTTCCATGGCCGTCTACTCGGACGTTTTCGCTTCGTTCCTGGCCAT
CCTCGTGTTCGTCATGACCTTACAGTTCCTGCAGCTGCTGGGCTTCAACC
GTCTCATCGGAGCCCTGTTCCACACACTGAGCAACGCAGGCAGGAAGATC
GCGATGTTTGCTTTACTCATATTCATTCTGATCACCGCATACAGTACCGC
TGGAGCCCTCCTTTTCGGACGTTGGAACCGCGACTACAGCAGCTTTCCCT
CAGCCGTCCGCTCACAGCTGCTCATGATCTTCCAGACCGTCTCCTACCAC
AGGATCATCTTAAGTCATCCTGTCGTGGGACGACTGTTCTTCTTCAGCTA
CGTGGTCATCGCCATGACCATCGTCCTGAACGTGTTCGTGTCCATCCTGG
ACGATGAGCTGCGGACGTCCAAGCGGGATCCGTGCGGCCTGGGCGGGGAC
ACGGACATGGGGGAGTTCATGATAGACAGATTCCTCCAGTTCCTGGGAGT
CGAAACTCGACAAAGAGCTACTAAAGTCGATGACAAGACACATACAGACT
ACATAGATGTGCAGCTGAAAGAACTGGAGGAAAAACTGGACCTGGTGCTG
GAGAAGGCGGGCTCTATATAGTTCCGTTCCATGGCCGTCTACTCGGACGT
TTTCGCTTCGTTCCTGGCCATCCTCGTGTTCGTCATGACCTTACAGTTCC
TGCAGCTGCTGGGCTTCAACCGTCTCATCGGAGCCCTGTTCCACACACTG
AGCAACGCAGGCAGGAAGATCGCGATGTTTGCTTTACTCATATTCATTCT
GATCACCGCATACAGTACCGCTGGAGCCCTCCTTTTCGGACGTTGGAACC
GCGACTACAGCAGCTTTCCCTCAGCCGTCCGCTCACAGCTGCTCATGATC
TTCCAGACCGTCTCCTACCACAGGATCATCTTAAGTCATCCTGTCGTGGG
ACGACTGTTCTTCTTCAGCTACGTGGTCATCGCCATGACCATCGTCCTGA
ACGTGTTCGTGTCCATCCTGGACGATGAGCTGCGGACGTCCAAGCGGGAT
CCGTGCGGCCTGGGCGGGGACACGGACATGGGGGAGTTCATGATAGACAG
ATTCCTCCAGTTCCTGGGAGTCGAAACTCGACAAAGAGCTACTAAAGTCG
ATGACAAGACACATACAGACTACATAGATGTGCAGCTGAAAGAACTGGAG
GAAAAACTGGACCTGGTGCTGGAGAAGGCGGGCTCTATATAGTTCCGTTC
CATGGCCGTCTACTCGGACGTTTTCGCTTCGTTCCTGGCCATCCTCGTGT
TCGTCATGACCTTACAGTTCCTGCAGCTGCTGGGCTTCAACCGTCTCATC
GGAGCCCTGTTCCACACACTGAGCAACGCAGGCAGGAAGATCGCGATGTT
TGCTTTACTCATATTCATTCTGATCACCGCATACAGTACCGCTGGAGCCC
TCCTTTTCGGACGTTGGAACCGCGACTACAGCAGCTTTCCCTCAGCCGTC
CGCTCACAGCTGCTCATGATCTTCCAGACCGTCTCCTACCACAGGATCAT
CTTAAGTCATCCTGTCGTGGGACGACTGTTCTTCTTCAGCTACGTGGTCA
TCGCCATGACCATCGTCCTGAACGTGTTCGTGTCCATCCTGGACGATGAG
CTGCGGACGTCCAAGCGGGATCCGTGCGGCCTGGGCGGGGACACGGACAT
GGGGGAGTTCATGATAGACAGATTCCTCCAGTTCCTGGGAGTCGAAACTC
GACAAAGAGCTACTAAAGTCGATGACAAGACACATACAGACTACATAGAT
GTGCAGCTGAAAGAACTGGAGGAAAAACTGGACCTGGTGCTGGAGAAGGC
GGGCTCTATATAGTTCCGTTCCATGGCCGTCTACTCGGACGTTTTCGCTT
CGTTCCTGGCCATCCTCGTGTTCGTCATGACCTTACAGTTCCTGCAGCTG
CTGGGCTTCAACCGTCTCATCGGAGCCCTGTTCCACACACTGAGCAACGC
AGGCAGGAAGATCGCGATGTTTGCTTTACTCATATTCATTCTGATCACCG
CATACAGTACCGCTGGAGCCCTCCTTTTCGGACGTTGGAACCGCGACTAC
AGCAGCTTTCCCTCAGCCGTCCGCTCACAGCTGCTCATGATCTTCCAGAC
CGTCTCCTACCACAGGATCATCTTAAGTCATCCTGTCGTGGGACGACTGT
TCTTCTTCAGCTACGTGGTCATCGCCATGACCATCGTCCTGAACGTGTTC
GTGTCCATCCTGGACGATGAGCTGCGGACGTCCAAGCGGGATCCGTGCGG
CCTGGGCGGGGACACGGACATGGGGGAGTTCATGATAGACAGATTCCTCC
AGTTCCTGGGAGTCGAAACTCGACAAAGAGCTACTAAAGTCGATGACAAG
ACACATACAGACTACATAGATGTGCAGCTGAAAGAACTGGAGGAAAAACT
GGACCTGGTGCTGGAGAAGGCGGGCTCTATATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000086 | genome | Sc0000086:1171752..1174072 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96193_cuf5 |
| Biotype | protein_coding |
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