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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96190_cuf1 >transcript:BL96190_cuf1-protein ID=transcript:BL96190_cuf1-protein|Name=transcript:BL96190_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=232bp
SISTVIHEGLGSALDSALSQSPTKTTWGPQTYGAAEQTRAQAVMGYFFAT
TEISLRTLLHNTTTSSPPAVIRSAAATVIYQRHATDRVQEGEFSRQRSEG
FVTVPEPDIVFQSSGNNADVVDSRFMAFSRNPFIWDNDTDTRSSVVSLDF
YDDAGQPLPVEDTQEPLQFFVQNYDTPGTPEVVFMNDSVVASNGLSYHRM
DVGNISMSTAIVVMVLPPPHVIGYQVYMQYNE Run BLAST on NCBI mRNA from alignment at Sc0000086:1159055..1161841+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96190_cuf1 ID=transcript:BL96190_cuf1|Name=transcript:BL96190_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2787bp|location=Sequence derived from alignment at Sc0000086:1159055..1161841+ (Branchiostoma lanceolatum)
TATCTATATCAACAGGTTTGTTGTGCATTTTCAACATATTCAAATTTTGT
ATCATAGTAATCTAGACATCTACTTTGGCATGCATTTGCCTAAATTTGGC
AGGGTGACTTCTTAAAATATTAAGGAAGAATATCGAATTTGTATGTAAGA
GATTGTGTCAATCATAACATCTCTTGCTCCTTTTTTCTGTTGCCGTTCAT
TGTAGTTATCCACGAAGGACTAGGTTCGGCTCTGGACAGCGCTCTTAGTC
AGTCACCGACGAAAACGACTTGGGGGCCTCAGACGTATGGGGCAGCCGAG
CAGACAAGGGTACGGACTATCTCTTTATGTCTTTTCACGCAAGACGAAAC
ATGTATCTGTATTGTGTACCGGAAAGGAGGACACAGGGTTGTACAAGGTG
GGGGAAGGCCCTTCAACACCAAGGGAAGGGACGGTACAGGATAGTACAGG
GTGAAAGCCCTTCAACATCAAGGGAAGTTAGGGTAAAAGATAGTTCAGGG
TGGGTAATGGTCCTTCAGCACCAAGGAAAGGGAGGGTACAGGATAGTACA
GGGCGGGGGAAGGCCCTTCAGCACCAAGGGAAGTGAGAGTACATGATAAA
TAGTACTGGGTGAAGGCCCTTCAGCACCAAGGAAGGGGAGGGTACAGGAT
AGTACAGGGTGGGGAAGGCCCTTCAGCACCAAGGGAAAGGAGAGTACATG
ATAGTAAAGGGGAAGGTCTTCAGCACCAAGGGAAGGGAGAGTACAGGATA
GTACAGGGTGAAGGCCCTTCAACACCAAGGGAGGGGATGGTACAGGATGG
TACAAGGTGGGGAATTCGGCTTAATCTCTATTGTGACAACAATATGTAAA
TAACACTTTTTAACGCACATTGGCGCATCTAGAACTCTAAAGACTTCTCT
CAACTATGTGTGTTTCTTTAACAAAGGCTTTATATATTAAGCTCCCCAGG
TTTGTGGTTTATCAAAAGAAGGAACGTTGAAGAATTAAGACAATAAGAGA
AATCTTAGATATTAGAATATCAAGTGTGTTTTCTTCTCAATCTAGGCTCA
GGCAGTCATGGGCTATTTCTTCGCCACGACGGAAATATCCCTCCGCACAC
TTCTTCATAACACCACGACCAGCTCCCCTCCTGCGGTCATCAGGTCTGCG
GCTGCAACAGTCATCTACCAGCGACATGCCACGGACCGTGTGCAAGAGGG
CGAGTTCAGTCGGCAAAGATCGGAAGGCTTCGTTACCGTACCCGAACCGG
ACATCGTCTTCCAGTCGTCGGGCAACAACGCCGATGTAGTGGACTCGAGG
GTGAGCATGTTGTTGTTGTTTATGTTGTTGTTGTTGTACGTTGTTGACAA
TGCAGCTTAAAGCACGTGATTATTTACGAACTTGACGTAGATGTTAAAAG
TTGTCGGTAATCTATGGCAGGCACATATATATTCGTACAAACGTTTGTCA
CAAAATGTCTGTATAAGTGGAACGATGCACCATGTACGAAGCCACACACA
TCGTTTACCTGTTGTTCACCAAGTATGTATTTGGTAGTCTGTTGGGTGTA
AAAGTCTGCATTTTACATTCGACCGCTCTATAGCCATGAACTCAAATCTA
TTTGGCTTCTTATGGCTTAGACATGTAATTAGTGTCGAACTTATGGCTGT
ATAATCCCACCTCAGTTCATGGCATTTTCACGAAATCCGTTCATCTGGGA
CAACGACACAGATACACGGTCATCTGTGGTCTCCCTGGACTTCTACGACG
ACGCAGGACAGCCTCTCCCTGTAGAAGACACACAGGAGCCGTTACAGGTA
ACGTTACGTCAAACCCCTCTCACAGTCGCAATATATCATCGTCCGGTTGG
CATTATACTTGATCGCTGGTTATTACTTCCCTATTCTTTTTCTAAGCTAG
GTGTCACCATATTTGTTACTGTTTATTCCCAGACCTAGTCATAAAGACAT
CTCAGCTACAACCTGCAACAAATATTGATTTTGATTTTTCGCGTGCAAGA
TTCTTACTTTAATACTGTATGATTCTCTTCAGCATATAAACATATATCAT
TTATTTGTTGTGTTTTGTGCTATGCTGTGAGAAGAATAGAAAACAGATGT
TGAATGACTTGAAACAAACGTATTCCTATTCTCATGGCCATTCTATTCCA
TTTTTGTCCAGTTTTTCGTCCAGAATTACGACACACCCGGCACGCCTGAG
GTGGTGTTTATGAACGACTCTGTCGTCGCGAGTAACGGCCTGTCGTACCA
CAGGATGGACGTCGGCAACATCTCCATGTCAACAGCCATTGTCGTCATGG
TCCTACCACCTCCTCATGTCATAGGTCAGCATTTCACTTTTATAGAATTA
TGTGCCTCACCTATATTTCGGTGTACTGATATTTCATTTGCAGAGTATGC
CGTTTTGGTTCACTTTGATCAGAAAGTAATGTAAACAGTACGACCAGCCA
AGAAAATACAAGGAAGCCCAGAAGAAAGCTATATCACAAGTTCCATAATG
GCTGGTCAACTTAAAACCTTGACTTAAAAGTTTTGTTTAAAGGTCATATC
ACTTATATGTATGATACGTATTCAACAACAAACGTTTTCTATCTATACAT
ACATCTATTACAGCTTATGATAGATTTCCTGATACTAATCTCATATGAGT
AAGCAACCTAATCAAAAACACGAAAAGGGACAACAAAGAGGGTAAATTAC
ATTTTAAAGATTTATGTAAATTTTGGCCACTTTACCGTACATTTATACTT
ACATCAGGTTACCAGGTATACATGCAGTACAACGAGC Coding sequence (CDS) from alignment at Sc0000086:1159055..1161841+ >transcript:BL96190_cuf1 ID=transcript:BL96190_cuf1|Name=transcript:BL96190_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4176bp|location=Sequence derived from alignment at Sc0000086:1159055..1161841+ (Branchiostoma lanceolatum)
TCTATATCAACAGTTATCCACGAAGGACTAGGTTCGGCTCTGGACAGCGC
TCTTAGTCAGTCACCGACGAAAACGACTTGGGGGCCTCAGACGTATGGGG
CAGCCGAGCAGACAAGGGCTCAGGCAGTCATGGGCTATTTCTTCGCCACG
ACGGAAATATCCCTCCGCACACTTCTTCATAACACCACGACCAGCTCCCC
TCCTGCGGTCATCAGGTCTGCGGCTGCAACAGTCATCTACCAGCGACATG
CCACGGACCGTGTGCAAGAGGGCGAGTTCAGTCGGCAAAGATCGGAAGGC
TTCGTTACCGTACCCGAACCGGACATCGTCTTCCAGTCGTCGGGCAACAA
CGCCGATGTAGTGGACTCGAGGTTCATGGCATTTTCACGAAATCCGTTCA
TCTGGGACAACGACACAGATACACGGTCATCTGTGGTCTCCCTGGACTTC
TACGACGACGCAGGACAGCCTCTCCCTGTAGAAGACACACAGGAGCCGTT
ACAGTTTTTCGTCCAGAATTACGACACACCCGGCACGCCTGAGGTGGTGT
TTATGAACGACTCTGTCGTCGCGAGTAACGGCCTGTCGTACCACAGGATG
GACGTCGGCAACATCTCCATGTCAACAGCCATTGTCGTCATGGTCCTACC
ACCTCCTCATGTCATAGGTTACCAGGTATACATGCAGTACAACGAGTCTA
TATCAACAGTTATCCACGAAGGACTAGGTTCGGCTCTGGACAGCGCTCTT
AGTCAGTCACCGACGAAAACGACTTGGGGGCCTCAGACGTATGGGGCAGC
CGAGCAGACAAGGGCTCAGGCAGTCATGGGCTATTTCTTCGCCACGACGG
AAATATCCCTCCGCACACTTCTTCATAACACCACGACCAGCTCCCCTCCT
GCGGTCATCAGGTCTGCGGCTGCAACAGTCATCTACCAGCGACATGCCAC
GGACCGTGTGCAAGAGGGCGAGTTCAGTCGGCAAAGATCGGAAGGCTTCG
TTACCGTACCCGAACCGGACATCGTCTTCCAGTCGTCGGGCAACAACGCC
GATGTAGTGGACTCGAGGTTCATGGCATTTTCACGAAATCCGTTCATCTG
GGACAACGACACAGATACACGGTCATCTGTGGTCTCCCTGGACTTCTACG
ACGACGCAGGACAGCCTCTCCCTGTAGAAGACACACAGGAGCCGTTACAG
TTTTTCGTCCAGAATTACGACACACCCGGCACGCCTGAGGTGGTGTTTAT
GAACGACTCTGTCGTCGCGAGTAACGGCCTGTCGTACCACAGGATGGACG
TCGGCAACATCTCCATGTCAACAGCCATTGTCGTCATGGTCCTACCACCT
CCTCATGTCATAGGTTACCAGGTATACATGCAGTACAACGAGTCTATATC
AACAGTTATCCACGAAGGACTAGGTTCGGCTCTGGACAGCGCTCTTAGTC
AGTCACCGACGAAAACGACTTGGGGGCCTCAGACGTATGGGGCAGCCGAG
CAGACAAGGGCTCAGGCAGTCATGGGCTATTTCTTCGCCACGACGGAAAT
ATCCCTCCGCACACTTCTTCATAACACCACGACCAGCTCCCCTCCTGCGG
TCATCAGGTCTGCGGCTGCAACAGTCATCTACCAGCGACATGCCACGGAC
CGTGTGCAAGAGGGCGAGTTCAGTCGGCAAAGATCGGAAGGCTTCGTTAC
CGTACCCGAACCGGACATCGTCTTCCAGTCGTCGGGCAACAACGCCGATG
TAGTGGACTCGAGGTTCATGGCATTTTCACGAAATCCGTTCATCTGGGAC
AACGACACAGATACACGGTCATCTGTGGTCTCCCTGGACTTCTACGACGA
CGCAGGACAGCCTCTCCCTGTAGAAGACACACAGGAGCCGTTACAGTTTT
TCGTCCAGAATTACGACACACCCGGCACGCCTGAGGTGGTGTTTATGAAC
GACTCTGTCGTCGCGAGTAACGGCCTGTCGTACCACAGGATGGACGTCGG
CAACATCTCCATGTCAACAGCCATTGTCGTCATGGTCCTACCACCTCCTC
ATGTCATAGGTTACCAGGTATACATGCAGTACAACGAGTCTATATCAACA
GTTATCCACGAAGGACTAGGTTCGGCTCTGGACAGCGCTCTTAGTCAGTC
ACCGACGAAAACGACTTGGGGGCCTCAGACGTATGGGGCAGCCGAGCAGA
CAAGGGCTCAGGCAGTCATGGGCTATTTCTTCGCCACGACGGAAATATCC
CTCCGCACACTTCTTCATAACACCACGACCAGCTCCCCTCCTGCGGTCAT
CAGGTCTGCGGCTGCAACAGTCATCTACCAGCGACATGCCACGGACCGTG
TGCAAGAGGGCGAGTTCAGTCGGCAAAGATCGGAAGGCTTCGTTACCGTA
CCCGAACCGGACATCGTCTTCCAGTCGTCGGGCAACAACGCCGATGTAGT
GGACTCGAGGTTCATGGCATTTTCACGAAATCCGTTCATCTGGGACAACG
ACACAGATACACGGTCATCTGTGGTCTCCCTGGACTTCTACGACGACGCA
GGACAGCCTCTCCCTGTAGAAGACACACAGGAGCCGTTACAGTTTTTCGT
CCAGAATTACGACACACCCGGCACGCCTGAGGTGGTGTTTATGAACGACT
CTGTCGTCGCGAGTAACGGCCTGTCGTACCACAGGATGGACGTCGGCAAC
ATCTCCATGTCAACAGCCATTGTCGTCATGGTCCTACCACCTCCTCATGT
CATAGGTTACCAGGTATACATGCAGTACAACGAGTCTATATCAACAGTTA
TCCACGAAGGACTAGGTTCGGCTCTGGACAGCGCTCTTAGTCAGTCACCG
ACGAAAACGACTTGGGGGCCTCAGACGTATGGGGCAGCCGAGCAGACAAG
GGCTCAGGCAGTCATGGGCTATTTCTTCGCCACGACGGAAATATCCCTCC
GCACACTTCTTCATAACACCACGACCAGCTCCCCTCCTGCGGTCATCAGG
TCTGCGGCTGCAACAGTCATCTACCAGCGACATGCCACGGACCGTGTGCA
AGAGGGCGAGTTCAGTCGGCAAAGATCGGAAGGCTTCGTTACCGTACCCG
AACCGGACATCGTCTTCCAGTCGTCGGGCAACAACGCCGATGTAGTGGAC
TCGAGGTTCATGGCATTTTCACGAAATCCGTTCATCTGGGACAACGACAC
AGATACACGGTCATCTGTGGTCTCCCTGGACTTCTACGACGACGCAGGAC
AGCCTCTCCCTGTAGAAGACACACAGGAGCCGTTACAGTTTTTCGTCCAG
AATTACGACACACCCGGCACGCCTGAGGTGGTGTTTATGAACGACTCTGT
CGTCGCGAGTAACGGCCTGTCGTACCACAGGATGGACGTCGGCAACATCT
CCATGTCAACAGCCATTGTCGTCATGGTCCTACCACCTCCTCATGTCATA
GGTTACCAGGTATACATGCAGTACAACGAGTCTATATCAACAGTTATCCA
CGAAGGACTAGGTTCGGCTCTGGACAGCGCTCTTAGTCAGTCACCGACGA
AAACGACTTGGGGGCCTCAGACGTATGGGGCAGCCGAGCAGACAAGGGCT
CAGGCAGTCATGGGCTATTTCTTCGCCACGACGGAAATATCCCTCCGCAC
ACTTCTTCATAACACCACGACCAGCTCCCCTCCTGCGGTCATCAGGTCTG
CGGCTGCAACAGTCATCTACCAGCGACATGCCACGGACCGTGTGCAAGAG
GGCGAGTTCAGTCGGCAAAGATCGGAAGGCTTCGTTACCGTACCCGAACC
GGACATCGTCTTCCAGTCGTCGGGCAACAACGCCGATGTAGTGGACTCGA
GGTTCATGGCATTTTCACGAAATCCGTTCATCTGGGACAACGACACAGAT
ACACGGTCATCTGTGGTCTCCCTGGACTTCTACGACGACGCAGGACAGCC
TCTCCCTGTAGAAGACACACAGGAGCCGTTACAGTTTTTCGTCCAGAATT
ACGACACACCCGGCACGCCTGAGGTGGTGTTTATGAACGACTCTGTCGTC
GCGAGTAACGGCCTGTCGTACCACAGGATGGACGTCGGCAACATCTCCAT
GTCAACAGCCATTGTCGTCATGGTCCTACCACCTCCTCATGTCATAGGTT
ACCAGGTATACATGCAGTACAACGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000086 | genome | Sc0000086:1159055..1161841 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96190_cuf1 |
| Biotype | protein_coding |
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