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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96187_cuf3 >transcript:BL96187_cuf3-protein ID=transcript:BL96187_cuf3-protein|Name=transcript:BL96187_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=274bp
KDVVLVVILLFQAVIRTAGDWTSVLNVTRTGREGDVFTERTDTCTEAWNG
YCSQRYANRLSWREPGGRRVCMCQCYTWFNTYLSDEDSCENVPSDSDCEW
TFEDEGPENLYTVTPGAGQTGWIDWGDEDWPGSGVTPNSCSIDWSCDMTS
QTYLEDGEWKDLSCLGGDIPDDVFVLDYEENGRRRNCQRHWFVSWDVTYD
ITRLGGLVIHLDITCTRRRWGNRQYTESQCLRFKTEGTHLYTPGPGCTAY
TQTTPPGKVTTQRSQQSKKIPFDL Run BLAST on NCBI mRNA from alignment at Sc0000086:1039232..1042429- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96187_cuf3 ID=transcript:BL96187_cuf3|Name=transcript:BL96187_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3198bp|location=Sequence derived from alignment at Sc0000086:1039232..1042429- (Branchiostoma lanceolatum)
GAAGGACGTTGTTCTAGTAGTTATCCTGCTGTTTCAAGCAGTCATACGGA
CAGCAGGGGACTGGACTTCGGTCCTTAACGTCACCAGGACCGGCAGAGAA
GGCGACGTCTTCACGGAGAGAACGGACACCTGTACGGAGGCTTGGAATGG
TTACTGCAGCCAAAGATATGCTAATCGTCTCAGCTGGAGAGAGCCAGGTG
GCCGGCGGGTGTGCATGTGCCAGTGTTACACCTGGTTCAACACGTACCTG
TCTGACGAGGATTCGTGTGAGAATGTTCCTTCAGATTCAGGTAAATTTCT
TAAACTTTAACATGGTAGAAAATTTAGTTGTACTTTAAAGTTGATAAATC
AGAAAAAGAGATTTTGTAACGACTTCTATTTGCTGTCTGGAGAGGTTTTT
AAAATAGCCTTTGACCTTGTTTTCTCACTCACTGATTCTGTACACAGTTT
AGAATGTTTTATAGGTATGTCACCTATTTGAGGAAAACATGAAATGAAGG
GGCACAATTTGCATGACAATGAAAAATAAAATTTCACTTCATAAATAACG
TTATATGAAATATGGAAGTATATTTTTCAGCGTTTGGAGCCCAAAACAAA
CAGAATCATTGTAAAAAAAAATGTCCAGGTATTGTGTATACTATTATTAC
CAGCTTTATAATTCTTACTCCCTCCCACATTTTAATTATAAGAAATAGAC
ATTTGTTTGGCTGAAAAATTCTTATGCATGAAGTATGCATCTGCTGTTAA
TCTGAAAATTGACAGTTTTATTTCATTTGACTCACTCCAGATTGCGAGTG
GACCTTTGAAGACGAAGGACCAGAGAACCTGTACACGGTCACACCTGGCG
CCGGTCAAACCGGCTGGATAGACTGGGGGGACGAGGACTGGCCAGGCTCG
GGGGTCACTCCCAACTCCTGTTCCATAGACTGGTCCTGCGACATGACCTC
GCAAACTTACCTGGAAGATGGGGAGTGGAAGGATCTCTCGTGTCTCGGCG
GAGACATTCCGGACGACGTTTTTGTCTTAGACTACGAAGAAAATGGCAGG
AGGAGAAACTGTCAGAGACATTGGTTTGTCTCTGTAAGTATGCGTTTTAT
GACGTTGACTCTCATAATTCCACCGGGTTTCCCACGACTGCCACATTGAA
AAAAAAATGAATTTAAAAATGAATCTACTATTGCCACATTAGTAATCCTC
GACCCCGATGCACACACACTTCAGATATCCAGATGTTCAAGACATTCTTG
AGAAGACCTCAATAACACAGACTTTTTAATGTGGAAGTCTCAGGGCATTA
TGAGAGTTGACCTTACAGTAATTGTTGCTTTCTACTTTATAAGTTAAATT
AATGAGGAATTGTTTGTATTCTGTAATGTAACTTTTGGAACTGTAGTCAA
ACAGCACTGTTGACAGTGACAGTAAATGAAAAAGTTATCCAAGAAAAAAG
GGTAATGTGTACTAATGTACATGTATGTTTGCCACCAATTTCAAAAGAAT
GTTAAGTAAGATAGGCTGCTGTTATTAAGTCAGAAGTGTCACAGGAAGTT
GTGTAGTCTACTTCCTATGTGCTCCCAAAGGAAGTCATGTATGGAATTAT
ACTATGTAATGACAGTTCTAAATTTCATTTATCTCTTACCACCGTCCAAT
TGAAGCACTGTAATCTAATTGAATTACAGTCAAACCTCCTTGTTTTGATG
TAGAATTTTCTAACTAAACCTAATCTGGGCCTATGGGTGATAAATCAACT
TTGTGTCAACACCAGTATGATTTACTGTTTGTGGCCAATGTGTCAACAGG
AAAGAGATTTGTTTGTTGTTTGTTCCAGTGGGATGTTACGTATGACATCA
CACGACTGGGAGGACTGGTGATCCACCTGGACATCACCTGCACACGGCGC
AGGTGGGGGAACAGACAGTACACCGAGTCACAATGTCTCAGGTTCAAGAC
AGAGGGAACTCATCTTTGTGAGTATAGACATGTACATGATTACAAACTAA
TTTTAGAAGTTCTTTGAATCATAACTTCCTAGTCTTTAAAAAATGCTGTG
TTTTATTTTCATGCCATCGTTGTGTTAAAAGCGGTCAAAATACAGTCTAA
CCAAGGAGGTTGTATGTGTATTAACTCCTTGGTCTAACCTGTCTTTAGAA
AAGCGACCAATACAGGGGCTTGAAGAAATTTTTCATAATAGACAGGCAGT
TTTCGCCTCCATTATAAAATTACAAATATGTGATTTTGCGCTACAGTATT
GTTTCAACTGCAACAATGCGAAAGCCTTTTGTCCACTCCTAAAATTGAAT
CCTTGCAAAAATAAGTAAGGTTACAGTAGATAATTAGAAATGTCTTTATA
TTCAATGAATCGCTATCTTTGTTGTGAGCAGACAATTGCGTGCGTAATCA
TAGTTATCATTAATATAATTAATGCAATTTTCAGCACGCCTTGGCTCTGT
TGGCTCTATCTTTTCACACAATTGTTCTTTGAATGCTGACAACTGTCAAC
ACTGAGTTCTTTCACCACGGCTTAAGATTCAAAATGACCTGGTCTGTCAC
ATGTTATTTATAATTCTGTACCCTTGCGTGCTGTAGACACACCAGGGCCA
GGCTGTACCGCGTACACACAGACCACACCCCCAGGCAAGGTCACCACACA
AAGGAGCCAGCAAAGTAAGAAAATACCTTTTGATCTGTAAATCTCTCTGG
AATTTGCTTGTATTTAATTGAATCTGGAGTACATGTTGAATGAACTTTAC
TTGTATTGTTTGGGTTCAAAGACTAAGTCTTGTTATTAAAAACCAGTAGA
AAAACAAACATTGCATACATTTAGTACTGTGAATGTCACTGAAATACCGA
CTGTAACTGTACAATACCCTTTGCTTTTGACTATATGCATGCATATTCTT
GTAAATTCTTTTCTTATACATGTATTTGTTGCTGCAGTGTTCTAATGTTT
AGTTAAAATTTTAGTTTCAATCTGTATGGTATAGATGCATGTTGGTCGTG
ATGTCTACATTCTCTGTACGGTTGTTACCTGGCCTTGTTGTTTGATTACA
CCAAGGAGGTGATTACACTGAGTGTACGCCTGTCTAATTTCAATGTGTCC
TTTAACAAGCTACAGGTAGTGCACCTGAGACACCTGATGCAGGTATTACT
AAAGCACCTGGTGTGGAGACAACACATTCCAACACAACTTCTGGAAAT Coding sequence (CDS) from alignment at Sc0000086:1039232..1042429- >transcript:BL96187_cuf3 ID=transcript:BL96187_cuf3|Name=transcript:BL96187_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=3300bp|location=Sequence derived from alignment at Sc0000086:1039232..1042429- (Branchiostoma lanceolatum)
AAGGACGTTGTTCTAGTAGTTATCCTGCTGTTTCAAGCAGTCATACGGAC
AGCAGGGGACTGGACTTCGGTCCTTAACGTCACCAGGACCGGCAGAGAAG
GCGACGTCTTCACGGAGAGAACGGACACCTGTACGGAGGCTTGGAATGGT
TACTGCAGCCAAAGATATGCTAATCGTCTCAGCTGGAGAGAGCCAGGTGG
CCGGCGGGTGTGCATGTGCCAGTGTTACACCTGGTTCAACACGTACCTGT
CTGACGAGGATTCGTGTGAGAATGTTCCTTCAGATTCAGATTGCGAGTGG
ACCTTTGAAGACGAAGGACCAGAGAACCTGTACACGGTCACACCTGGCGC
CGGTCAAACCGGCTGGATAGACTGGGGGGACGAGGACTGGCCAGGCTCGG
GGGTCACTCCCAACTCCTGTTCCATAGACTGGTCCTGCGACATGACCTCG
CAAACTTACCTGGAAGATGGGGAGTGGAAGGATCTCTCGTGTCTCGGCGG
AGACATTCCGGACGACGTTTTTGTCTTAGACTACGAAGAAAATGGCAGGA
GGAGAAACTGTCAGAGACATTGGTTTGTCTCTTGGGATGTTACGTATGAC
ATCACACGACTGGGAGGACTGGTGATCCACCTGGACATCACCTGCACACG
GCGCAGGTGGGGGAACAGACAGTACACCGAGTCACAATGTCTCAGGTTCA
AGACAGAGGGAACTCATCTTTACACACCAGGGCCAGGCTGTACCGCGTAC
ACACAGACCACACCCCCAGGCAAGGTCACCACACAAAGGAGCCAGCAAAG
TAAGAAAATACCTTTTGATCTGTAAAAGGACGTTGTTCTAGTAGTTATCC
TGCTGTTTCAAGCAGTCATACGGACAGCAGGGGACTGGACTTCGGTCCTT
AACGTCACCAGGACCGGCAGAGAAGGCGACGTCTTCACGGAGAGAACGGA
CACCTGTACGGAGGCTTGGAATGGTTACTGCAGCCAAAGATATGCTAATC
GTCTCAGCTGGAGAGAGCCAGGTGGCCGGCGGGTGTGCATGTGCCAGTGT
TACACCTGGTTCAACACGTACCTGTCTGACGAGGATTCGTGTGAGAATGT
TCCTTCAGATTCAGATTGCGAGTGGACCTTTGAAGACGAAGGACCAGAGA
ACCTGTACACGGTCACACCTGGCGCCGGTCAAACCGGCTGGATAGACTGG
GGGGACGAGGACTGGCCAGGCTCGGGGGTCACTCCCAACTCCTGTTCCAT
AGACTGGTCCTGCGACATGACCTCGCAAACTTACCTGGAAGATGGGGAGT
GGAAGGATCTCTCGTGTCTCGGCGGAGACATTCCGGACGACGTTTTTGTC
TTAGACTACGAAGAAAATGGCAGGAGGAGAAACTGTCAGAGACATTGGTT
TGTCTCTTGGGATGTTACGTATGACATCACACGACTGGGAGGACTGGTGA
TCCACCTGGACATCACCTGCACACGGCGCAGGTGGGGGAACAGACAGTAC
ACCGAGTCACAATGTCTCAGGTTCAAGACAGAGGGAACTCATCTTTACAC
ACCAGGGCCAGGCTGTACCGCGTACACACAGACCACACCCCCAGGCAAGG
TCACCACACAAAGGAGCCAGCAAAGTAAGAAAATACCTTTTGATCTGTAA
AAGGACGTTGTTCTAGTAGTTATCCTGCTGTTTCAAGCAGTCATACGGAC
AGCAGGGGACTGGACTTCGGTCCTTAACGTCACCAGGACCGGCAGAGAAG
GCGACGTCTTCACGGAGAGAACGGACACCTGTACGGAGGCTTGGAATGGT
TACTGCAGCCAAAGATATGCTAATCGTCTCAGCTGGAGAGAGCCAGGTGG
CCGGCGGGTGTGCATGTGCCAGTGTTACACCTGGTTCAACACGTACCTGT
CTGACGAGGATTCGTGTGAGAATGTTCCTTCAGATTCAGATTGCGAGTGG
ACCTTTGAAGACGAAGGACCAGAGAACCTGTACACGGTCACACCTGGCGC
CGGTCAAACCGGCTGGATAGACTGGGGGGACGAGGACTGGCCAGGCTCGG
GGGTCACTCCCAACTCCTGTTCCATAGACTGGTCCTGCGACATGACCTCG
CAAACTTACCTGGAAGATGGGGAGTGGAAGGATCTCTCGTGTCTCGGCGG
AGACATTCCGGACGACGTTTTTGTCTTAGACTACGAAGAAAATGGCAGGA
GGAGAAACTGTCAGAGACATTGGTTTGTCTCTTGGGATGTTACGTATGAC
ATCACACGACTGGGAGGACTGGTGATCCACCTGGACATCACCTGCACACG
GCGCAGGTGGGGGAACAGACAGTACACCGAGTCACAATGTCTCAGGTTCA
AGACAGAGGGAACTCATCTTTACACACCAGGGCCAGGCTGTACCGCGTAC
ACACAGACCACACCCCCAGGCAAGGTCACCACACAAAGGAGCCAGCAAAG
TAAGAAAATACCTTTTGATCTGTAAAAGGACGTTGTTCTAGTAGTTATCC
TGCTGTTTCAAGCAGTCATACGGACAGCAGGGGACTGGACTTCGGTCCTT
AACGTCACCAGGACCGGCAGAGAAGGCGACGTCTTCACGGAGAGAACGGA
CACCTGTACGGAGGCTTGGAATGGTTACTGCAGCCAAAGATATGCTAATC
GTCTCAGCTGGAGAGAGCCAGGTGGCCGGCGGGTGTGCATGTGCCAGTGT
TACACCTGGTTCAACACGTACCTGTCTGACGAGGATTCGTGTGAGAATGT
TCCTTCAGATTCAGATTGCGAGTGGACCTTTGAAGACGAAGGACCAGAGA
ACCTGTACACGGTCACACCTGGCGCCGGTCAAACCGGCTGGATAGACTGG
GGGGACGAGGACTGGCCAGGCTCGGGGGTCACTCCCAACTCCTGTTCCAT
AGACTGGTCCTGCGACATGACCTCGCAAACTTACCTGGAAGATGGGGAGT
GGAAGGATCTCTCGTGTCTCGGCGGAGACATTCCGGACGACGTTTTTGTC
TTAGACTACGAAGAAAATGGCAGGAGGAGAAACTGTCAGAGACATTGGTT
TGTCTCTTGGGATGTTACGTATGACATCACACGACTGGGAGGACTGGTGA
TCCACCTGGACATCACCTGCACACGGCGCAGGTGGGGGAACAGACAGTAC
ACCGAGTCACAATGTCTCAGGTTCAAGACAGAGGGAACTCATCTTTACAC
ACCAGGGCCAGGCTGTACCGCGTACACACAGACCACACCCCCAGGCAAGG
TCACCACACAAAGGAGCCAGCAAAGTAAGAAAATACCTTTTGATCTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000086 | genome | Sc0000086:1039232..1042429 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96187_cuf3 |
| Biotype | protein_coding |
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