transcript:BL95296_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95296_evm1
Unique Nametranscript:BL95296_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95296_evm1

>transcript:BL95296_evm1-protein ID=transcript:BL95296_evm1-protein|Name=transcript:BL95296_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=114bp
MARVLGVGTGLFLLAVIIVLALFLCVAFTKAGGALKNAAVGIVALAVITS
VILIVLPRQPESAADQQVTVITDDMVIPRTVLLSFMVIFTLLSLAFLVVF
DYVEPIYAKPIRTR
Run BLAST on NCBI

mRNA from alignment at Sc0000017:3796462..3797892-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95296_evm1 ID=transcript:BL95296_evm1|Name=transcript:BL95296_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=1431bp|location=Sequence derived from alignment at Sc0000017:3796462..3797892- (Branchiostoma lanceolatum)
ATGGCACGGGTTCTGGGTGTTGGGACTGGTCTCTTCCTGCTTGCTGTCAT CATTGTGCTGGCTTTGTTCCTGTGCGTCGCCTTTACAAAGGCTGGAGGAG CTCTTAAGGTAGATTTTTGTCATTCAAACTATTTTCACCATACATCCATT AATACAAATATTAGATTAGGCCACACCAATTAAATTTTCATCATCATGAT CATCTTCGCCGCTTTTCAGTTCACACAGAGGTGGGCCATCATTGTTTAAT AAAATTTTGGTAGCTTATGACTTTGAAATATGTGCTATTGGTTTTGCTAC CCCCCCCCCCCACCAGATTCTTTTTGGAACTGCAGGAATGTTTTTGTTGG AAACTTTGGGGAAAAAAGGAGATAAATGAAGTCATTCAGTCTGATTGATT TTCATGATTTTTGGTTTGTTTTACATTGCAATCGAAACTTGTGATTTATA GCTATTGTCATTTAGTGTTTCAGAGATTTCTATTTGCTTGTTAGAATTGA GCAGAAGTATTTGTATATATTTTTGTAACCATGCATTCTTCTTGTCCCTA TCAGAATGCGGCTGTTGGTATTGTTGCGCTTGCTGTGATTACATCGGTAA TTCTGATCGTCCTGCCGCGACAGCCTGAGAGTGCAGCAGACCAACAAGTA ACAGTCATAACAGGTAAGGTTTATAACCTGGTCCCAGACTCTTATATAGA GTCAGCATCGGGACTGTCTCCAGGACCCGTCCCCCCTCATTCCGGGACAG AAATTTGCTTGTTGGGACAGACAATAAGTTTACCTAATTCATGAAAAAGT CTGAACTTCATGATGTGAAATTGATGAAAATGTATTTTCGAAGTTCAAAA TGACAGATCATTTAACAATGAAAATGTACAAGAAAATAGATTAGCTCCCA CACAATGAGTGGAACTGAAAAAAATTCAAAGCTGGAGACAGCCCTGGGTT TAGGGTTCTTTAGCCTGTACTAGTAATAGTGGTACATTTCTTTAATGTAG TAGTCTGGTAACCAGCTTAGGTGAGGTTTGGTGGTAGCCTGTCTGCATGG TAAGTATGTGCACCATCACATTTTTAATCATTACAAATATAAAGGTTTTG GTATCACATCACTGCATTGTAATGTATTATGCTGCTTCATTAATCAGTTA TAAGGATTATATGTAGCTATTTGAAGCTGTGATAAAAGTTAGCTTGCGTC TTGGTTAGCATTTCAAACAATAGATCATAAACTGAATAGCAAATGAGTGT AATGAGCAGAAAGATTCTGAACAGTTTTACATGATATTTTTCTACACTTA CAGATGACATGGTGATTCCGAGAACAGTGCTGCTTTCCTTCATGGTCATC TTCACGCTCCTGTCCCTGGCGTTTCTCGTCGTCTTTGATTATGTGGAACC CATCTATGCCAAGCCCATCAGAACTAGATAA

Coding sequence (CDS) from alignment at Sc0000017:3796462..3797892-

>transcript:BL95296_evm1 ID=transcript:BL95296_evm1|Name=transcript:BL95296_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=1035bp|location=Sequence derived from alignment at Sc0000017:3796462..3797892- (Branchiostoma lanceolatum)
ATGGCACGGGTTCTGGGTGTTGGGACTGGTCTCTTCCTGCTTGCTGTCAT
CATTGTGCTGGCTTTGTTCCTGTGCGTCGCCTTTACAAAGGCTGGAGGAG
CTCTTAAGAATGCGGCTGTTGGTATTGTTGCGCTTGCTGTGATTACATCG
GTAATTCTGATCGTCCTGCCGCGACAGCCTGAGAGTGCAGCAGACCAACA
AGTAACAGTCATAACAGATGACATGGTGATTCCGAGAACAGTGCTGCTTT
CCTTCATGGTCATCTTCACGCTCCTGTCCCTGGCGTTTCTCGTCGTCTTT
GATTATGTGGAACCCATCTATGCCAAGCCCATCAGAACTAGATAAATGGC
ACGGGTTCTGGGTGTTGGGACTGGTCTCTTCCTGCTTGCTGTCATCATTG
TGCTGGCTTTGTTCCTGTGCGTCGCCTTTACAAAGGCTGGAGGAGCTCTT
AAGAATGCGGCTGTTGGTATTGTTGCGCTTGCTGTGATTACATCGGTAAT
TCTGATCGTCCTGCCGCGACAGCCTGAGAGTGCAGCAGACCAACAAGTAA
CAGTCATAACAGATGACATGGTGATTCCGAGAACAGTGCTGCTTTCCTTC
ATGGTCATCTTCACGCTCCTGTCCCTGGCGTTTCTCGTCGTCTTTGATTA
TGTGGAACCCATCTATGCCAAGCCCATCAGAACTAGATAAATGGCACGGG
TTCTGGGTGTTGGGACTGGTCTCTTCCTGCTTGCTGTCATCATTGTGCTG
GCTTTGTTCCTGTGCGTCGCCTTTACAAAGGCTGGAGGAGCTCTTAAGAA
TGCGGCTGTTGGTATTGTTGCGCTTGCTGTGATTACATCGGTAATTCTGA
TCGTCCTGCCGCGACAGCCTGAGAGTGCAGCAGACCAACAAGTAACAGTC
ATAACAGATGACATGGTGATTCCGAGAACAGTGCTGCTTTCCTTCATGGT
CATCTTCACGCTCCTGTCCCTGGCGTTTCTCGTCGTCTTTGATTATGTGG
AACCCATCTATGCCAAGCCCATCAGAACTAGATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95296gene:BL95296Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95296_evm1-E1BL95296_evm1-E1-1564476830-135735Branchiostoma lanceolatumexon
BL95296_evm1-E2BL95296_evm1-E2-1564476830-135733Branchiostoma lanceolatumexon
BL95296_evm1-E3BL95296_evm1-E3-1564476830-135731Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95296_evm1transcript:BL95296_evm1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000017genomeSc0000017:3796462..3797892 -
Properties
Property NameValue
Transcript idBL95296_evm1
Biotypeprotein_coding