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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90973_cuf3 >transcript:BL90973_cuf3-protein ID=transcript:BL90973_cuf3-protein|Name=transcript:BL90973_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=632bp
MAQLAALTQLLLKISDSLSEEEVKSLRAILASEGLGAKRVEQATPHEMFN
MLEADNRIGKGNLGFLVQVLMSLKKGKLAEEAEQLEQEQRREEVEKVAAK
YKAMVEAAISKITQKVEALKSEITATAENCEQVEKEIQQHYKRLISKLQL
EEQEMVTRAQKVNRDRGGELTQEKEKMETELRKTKEAEISVQKMLDCKDD
TEALALRQDMEERFKKLSLQETDNSSGEGPTKVTFQPCSLSQVSGGSLSV
FAGFSIDVQEPAVESLPCSVTVTTNKADLTGGDVAPQIEVTSPQGKTTLI
QTTAHTSPPLAAGKGQTSRVRRVWGAEWRPQTSGKHSLGVCMGGKKDLGS
LTVDVGSNNPVLRFGQKGSQQGQFDTPIDVAVRGDRLYVGDYATRRVQVF
DLSGNFCSSFSTTADPIGIAVQADGTIVVKSGYEVKKFSLSGDLLHKFPL
GEYCTVPYGLAVQRDGRVVVADIGKHSIFLFEADGTLVKQVGGQGQGEGQ
FNEPHFVCVDKEDNIIVADKENHCVQVFNKNLNFKHKFGQKGTQPQDMFG
PNGVSADSRGNIVLANRGDNSDVGGVEHGGKLQVFRTDGTWVATIGSVGD
KLHGPIGVAVTEDGHVFVTDFLDNCIRKYRYM Run BLAST on NCBI mRNA from alignment at Sc0000001:1756660..1760081+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90973_cuf3 ID=transcript:BL90973_cuf3|Name=transcript:BL90973_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3422bp|location=Sequence derived from alignment at Sc0000001:1756660..1760081+ (Branchiostoma lanceolatum)
GTTGAACTTCCTGTTGAAAGAACAGTCCAAGTTCCACACTCAACATCAAG
ACTAGGAAAGGTTGGTTTTTGTGATGATTGTAAAAACAGTTATCAATTTC
CTTCACTATATATAATGCTAGTGACTGACTAATTTGCGATTATCATAACA
TTCTTCACTCATGTTGCAGTAGCTTCTAATTAAAACAGTTTGTAGTGAAG
ATAAACAAACACAATATGGTTAAGGCCAAAGGTCTCTTTGCTTTAAATTT
TTGCCAGTAATTTTGCTTTTAAGTCAGCTTTTTCTGGCCATTCTGTTAAA
AGTACAACAGTTATTGCCCTTGTCAGAGTTAAACCACTGAGTTGTCATGA
ATGAGGCTATAACATGTTAAGTAAAAACAGTGGCAGTAAAATAAAGTAAA
ATGCAATAACCATGCAATATGATAGTGCAATTGTCCCAAGACCTATAAGT
GTATTTCTCTCTCTCTCTTGGTTCTCCCGTCGTTGCGTCGTTGCTTCTGA
AGTATATCATTTGTATTTCATAGAATGGACATGCCATACTGGGCAAGTGT
GTCTCTGATCTTATCTCATAGCTCAAACTGTAATTATATAATCTGAAATA
TAAATCAAACTTATCTTTAAAATTTCTACTCTCAGACTCCTGACTTGCTG
TCAACAGCGGCCCAACCATGGCTCAGCTCGCAGCCCTCACTCAGCTGCTC
CTCAAGATTTCTGACAGCTTGTCAGAAGAAGAAGTGAAAAGTTTACGGGC
CATTCTGGCTAGTGAAGGTCTCGGGGCAAAAAGAGTAGAACAAGCAACAC
CTCATGAGATGTTCAACATGCTGGAGGCTGACAACAGGATCGGCAAGGGC
AACCTCGGCTTTCTCGTGCAGGTCTTAATGAGTCTGAAGAAAGGGAAACT
AGCAGAAGAAGCAGAACAGCTCGAACAAGAGCAGAGGAGGGAAGGTAGGT
CTGAATGATTTTGTAACATCGGACAGGTGTAGAATTTGTATAGTCTGTGG
TAATGATGTGCTGTGACATGGTGGCTTGCAATTGGTTCACTATCAATGAC
TATTAACAATATTGTTTACTAAGCGCATGAAGTATGCAACAAAACTACTT
AGTACATGTATCTGAGACATCATAATTTGCTTTTGTCATTAGAATGTCAT
TTCATTTTGTAGAAACTTCAAGACAAAATTTTTCTAATACAGTCCATCTT
TGTTTTACCACATGATCCCAAAGAAGTGGAAAAAGTAGCAGCAAAGTACA
AAGCTATGGTAGAAGCAGCCATCTCCAAGATCACCCAGAAAGTGGAAGCC
CTGAAAAGTGAAATCACAGCAACAGCAGAGAACTGTGAGCAGGTAGAGAA
GGAAATCCAGCAGCACTACAAACGGCTGATCTCCAAACTGCAGCTGGAAG
AGCAGGAGATGGTCACCAGGGCACAGAAGGTCAACAGGGACAGGGGAGGG
GAGCTCACTCAGGAGAAAGAAAAGATGGAGACAGAACTGAGAAAGACTAA
AGAGGCAGAGATTTCAGTTCAAAAGATGTTAGACTGTAAAGATGACACAG
AAGCTTTGGCCTTGAGGCAAGACATGGAAGAAAGGTTTAAGAAACTCTCC
TTGCAGGAAACAGATAACAGTAGTGGGGAAGGTCCTACAAAAGTGACCTT
CCAACCCTGTAGCTTATCCCAGGTTTCTGGAGGTTCCTTGTCAGTGTTTG
CAGGGTTCAGTATTGATGTACAGGAGCCAGCAGTAGAGAGTCTGCCCTGC
TCTGTCACAGTCACAACCAACAAGGCAGATCTTACAGGTGGGGATGTTGC
ACCACAGATAGAGGTGACCTCCCCCCAGGGAAAAACCACCCTGATACAGA
CTACAGCACACACTAGTCCCCCACTAGCTGCAGGGAAGGGACAAACCAGC
AGAGTTAGGAGGGTCTGGGGTGCAGAGTGGAGACCTCAGACTTCAGGGAA
ACATTCACTGGGGGTCTGTATGGGGGGTAAGAAGGACCTGGGTTCTCTCA
CTGTAGATGTGGGCAGTAACAACCCTGTACTGAGGTTTGGGCAGAAGGGC
AGCCAGCAGGGGCAGTTTGACACTCCTATAGATGTAGCAGTCAGGGGGGA
CAGGCTGTATGTGGGTGATTATGCTACCAGACGTGTTCAGGTGTTTGATC
TGAGTGGGAACTTTTGCTCTTCCTTTTCAACAACAGCTGACCCTATAGGA
ATTGCAGTTCAGGCTGATGGCACCATAGTGGTGAAATCTGGGTATGAAGT
GAAAAAATTTTCCCTGTCAGGAGATCTGCTGCACAAATTCCCTCTGGGTG
AATATTGCACAGTTCCCTATGGCCTGGCAGTACAGAGGGATGGGAGGGTT
GTTGTAGCTGATATTGGCAAACACAGCATCTTCCTGTTTGAGGCAGATGG
GACACTGGTGAAACAGGTGGGAGGGCAGGGACAGGGGGAGGGGCAGTTTA
ATGAGCCACATTTTGTCTGTGTGGATAAAGAAGACAACATCATTGTGGCA
GATAAAGAAAACCACTGTGTTCAGGTGTTTAACAAGAATCTGAATTTCAA
ACATAAGTTTGGTCAGAAGGGTACACAGCCACAGGACATGTTTGGCCCTA
ATGGTGTGTCAGCTGACAGCAGGGGGAACATAGTTCTGGCAAATAGAGGA
GATAACTCTGATGTAGGTGGTGTAGAACATGGCGGGAAGCTTCAGGTGTT
CCGGACAGACGGTACCTGGGTGGCCACCATAGGCAGTGTTGGGGACAAAC
TGCATGGGCCCATTGGGGTGGCTGTGACAGAGGATGGACATGTGTTTGTA
ACTGATTTTCTGGACAACTGTATTAGAAAGTACAGATACATGTAACAATT
ATACTGAATGCCCAGGAACAGGTCTTGATAGCTCTTTTGAACGAAAATGC
CGCTTCTGTTATTTTACACTTTATGATCATGTTTGGATATAGTAGGTGGC
CAATCTGTTTAACTCTGACTAGTTTTCCCTTCTATAGTCATGATAGATTT
TGCTAAGTATCAATCTCAGAAGTTTTGATCCATGTAAAAAAAACTTTTCC
TATTTGAGATATGGAGCTAGATGTGGAGAACTTGTATCTTAAGTAAACAT
TTGTCTAGAACAGCACCTGGCTGGATGACTCACATACTGTAATGTACAGT
AAGTTGATATACTAATACAAACATAATTCTTTAAAAAGAAGCCTTTTTTT
CCATGTGCCTCAAAGGCATGGGAGGTGCTTCTTTTCCATGACAAATTAAT
GTTGAATAGTAAGTTCACCAATGTCAGTTAATATTGCATGAATTATTTGA
TTTGATTACTCATTAGAGAATGAATGGTATTAAGCTGGGATGATTACATA
TATTATTGAAAACTATCTTCTGAAGAACAACATCCTAAAATCTTGTAGTA
CTACATACAATCTACTATCATG Coding sequence (CDS) from alignment at Sc0000001:1756660..1760081+ >transcript:BL90973_cuf3 ID=transcript:BL90973_cuf3|Name=transcript:BL90973_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=3798bp|location=Sequence derived from alignment at Sc0000001:1756660..1760081+ (Branchiostoma lanceolatum)
ATGGCTCAGCTCGCAGCCCTCACTCAGCTGCTCCTCAAGATTTCTGACAG
CTTGTCAGAAGAAGAAGTGAAAAGTTTACGGGCCATTCTGGCTAGTGAAG
GTCTCGGGGCAAAAAGAGTAGAACAAGCAACACCTCATGAGATGTTCAAC
ATGCTGGAGGCTGACAACAGGATCGGCAAGGGCAACCTCGGCTTTCTCGT
GCAGGTCTTAATGAGTCTGAAGAAAGGGAAACTAGCAGAAGAAGCAGAAC
AGCTCGAACAAGAGCAGAGGAGGGAAGAAGTGGAAAAAGTAGCAGCAAAG
TACAAAGCTATGGTAGAAGCAGCCATCTCCAAGATCACCCAGAAAGTGGA
AGCCCTGAAAAGTGAAATCACAGCAACAGCAGAGAACTGTGAGCAGGTAG
AGAAGGAAATCCAGCAGCACTACAAACGGCTGATCTCCAAACTGCAGCTG
GAAGAGCAGGAGATGGTCACCAGGGCACAGAAGGTCAACAGGGACAGGGG
AGGGGAGCTCACTCAGGAGAAAGAAAAGATGGAGACAGAACTGAGAAAGA
CTAAAGAGGCAGAGATTTCAGTTCAAAAGATGTTAGACTGTAAAGATGAC
ACAGAAGCTTTGGCCTTGAGGCAAGACATGGAAGAAAGGTTTAAGAAACT
CTCCTTGCAGGAAACAGATAACAGTAGTGGGGAAGGTCCTACAAAAGTGA
CCTTCCAACCCTGTAGCTTATCCCAGGTTTCTGGAGGTTCCTTGTCAGTG
TTTGCAGGGTTCAGTATTGATGTACAGGAGCCAGCAGTAGAGAGTCTGCC
CTGCTCTGTCACAGTCACAACCAACAAGGCAGATCTTACAGGTGGGGATG
TTGCACCACAGATAGAGGTGACCTCCCCCCAGGGAAAAACCACCCTGATA
CAGACTACAGCACACACTAGTCCCCCACTAGCTGCAGGGAAGGGACAAAC
CAGCAGAGTTAGGAGGGTCTGGGGTGCAGAGTGGAGACCTCAGACTTCAG
GGAAACATTCACTGGGGGTCTGTATGGGGGGTAAGAAGGACCTGGGTTCT
CTCACTGTAGATGTGGGCAGTAACAACCCTGTACTGAGGTTTGGGCAGAA
GGGCAGCCAGCAGGGGCAGTTTGACACTCCTATAGATGTAGCAGTCAGGG
GGGACAGGCTGTATGTGGGTGATTATGCTACCAGACGTGTTCAGGTGTTT
GATCTGAGTGGGAACTTTTGCTCTTCCTTTTCAACAACAGCTGACCCTAT
AGGAATTGCAGTTCAGGCTGATGGCACCATAGTGGTGAAATCTGGGTATG
AAGTGAAAAAATTTTCCCTGTCAGGAGATCTGCTGCACAAATTCCCTCTG
GGTGAATATTGCACAGTTCCCTATGGCCTGGCAGTACAGAGGGATGGGAG
GGTTGTTGTAGCTGATATTGGCAAACACAGCATCTTCCTGTTTGAGGCAG
ATGGGACACTGGTGAAACAGGTGGGAGGGCAGGGACAGGGGGAGGGGCAG
TTTAATGAGCCACATTTTGTCTGTGTGGATAAAGAAGACAACATCATTGT
GGCAGATAAAGAAAACCACTGTGTTCAGGTGTTTAACAAGAATCTGAATT
TCAAACATAAGTTTGGTCAGAAGGGTACACAGCCACAGGACATGTTTGGC
CCTAATGGTGTGTCAGCTGACAGCAGGGGGAACATAGTTCTGGCAAATAG
AGGAGATAACTCTGATGTAGGTGGTGTAGAACATGGCGGGAAGCTTCAGG
TGTTCCGGACAGACGGTACCTGGGTGGCCACCATAGGCAGTGTTGGGGAC
AAACTGCATGGGCCCATTGGGGTGGCTGTGACAGAGGATGGACATGTGTT
TGTAACTGATTTTCTGGACAACTGTATTAGAAAGTACAGATACATGTAAA
TGGCTCAGCTCGCAGCCCTCACTCAGCTGCTCCTCAAGATTTCTGACAGC
TTGTCAGAAGAAGAAGTGAAAAGTTTACGGGCCATTCTGGCTAGTGAAGG
TCTCGGGGCAAAAAGAGTAGAACAAGCAACACCTCATGAGATGTTCAACA
TGCTGGAGGCTGACAACAGGATCGGCAAGGGCAACCTCGGCTTTCTCGTG
CAGGTCTTAATGAGTCTGAAGAAAGGGAAACTAGCAGAAGAAGCAGAACA
GCTCGAACAAGAGCAGAGGAGGGAAGAAGTGGAAAAAGTAGCAGCAAAGT
ACAAAGCTATGGTAGAAGCAGCCATCTCCAAGATCACCCAGAAAGTGGAA
GCCCTGAAAAGTGAAATCACAGCAACAGCAGAGAACTGTGAGCAGGTAGA
GAAGGAAATCCAGCAGCACTACAAACGGCTGATCTCCAAACTGCAGCTGG
AAGAGCAGGAGATGGTCACCAGGGCACAGAAGGTCAACAGGGACAGGGGA
GGGGAGCTCACTCAGGAGAAAGAAAAGATGGAGACAGAACTGAGAAAGAC
TAAAGAGGCAGAGATTTCAGTTCAAAAGATGTTAGACTGTAAAGATGACA
CAGAAGCTTTGGCCTTGAGGCAAGACATGGAAGAAAGGTTTAAGAAACTC
TCCTTGCAGGAAACAGATAACAGTAGTGGGGAAGGTCCTACAAAAGTGAC
CTTCCAACCCTGTAGCTTATCCCAGGTTTCTGGAGGTTCCTTGTCAGTGT
TTGCAGGGTTCAGTATTGATGTACAGGAGCCAGCAGTAGAGAGTCTGCCC
TGCTCTGTCACAGTCACAACCAACAAGGCAGATCTTACAGGTGGGGATGT
TGCACCACAGATAGAGGTGACCTCCCCCCAGGGAAAAACCACCCTGATAC
AGACTACAGCACACACTAGTCCCCCACTAGCTGCAGGGAAGGGACAAACC
AGCAGAGTTAGGAGGGTCTGGGGTGCAGAGTGGAGACCTCAGACTTCAGG
GAAACATTCACTGGGGGTCTGTATGGGGGGTAAGAAGGACCTGGGTTCTC
TCACTGTAGATGTGGGCAGTAACAACCCTGTACTGAGGTTTGGGCAGAAG
GGCAGCCAGCAGGGGCAGTTTGACACTCCTATAGATGTAGCAGTCAGGGG
GGACAGGCTGTATGTGGGTGATTATGCTACCAGACGTGTTCAGGTGTTTG
ATCTGAGTGGGAACTTTTGCTCTTCCTTTTCAACAACAGCTGACCCTATA
GGAATTGCAGTTCAGGCTGATGGCACCATAGTGGTGAAATCTGGGTATGA
AGTGAAAAAATTTTCCCTGTCAGGAGATCTGCTGCACAAATTCCCTCTGG
GTGAATATTGCACAGTTCCCTATGGCCTGGCAGTACAGAGGGATGGGAGG
GTTGTTGTAGCTGATATTGGCAAACACAGCATCTTCCTGTTTGAGGCAGA
TGGGACACTGGTGAAACAGGTGGGAGGGCAGGGACAGGGGGAGGGGCAGT
TTAATGAGCCACATTTTGTCTGTGTGGATAAAGAAGACAACATCATTGTG
GCAGATAAAGAAAACCACTGTGTTCAGGTGTTTAACAAGAATCTGAATTT
CAAACATAAGTTTGGTCAGAAGGGTACACAGCCACAGGACATGTTTGGCC
CTAATGGTGTGTCAGCTGACAGCAGGGGGAACATAGTTCTGGCAAATAGA
GGAGATAACTCTGATGTAGGTGGTGTAGAACATGGCGGGAAGCTTCAGGT
GTTCCGGACAGACGGTACCTGGGTGGCCACCATAGGCAGTGTTGGGGACA
AACTGCATGGGCCCATTGGGGTGGCTGTGACAGAGGATGGACATGTGTTT
GTAACTGATTTTCTGGACAACTGTATTAGAAAGTACAGATACATGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000001 | genome | Sc0000001:1756660..1760081 + |
Properties
| Property Name | Value |
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| Transcript id | BL90973_cuf3 |
| Biotype | protein_coding |
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