transcript:BL88815_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL88815_cuf0
Unique Nametranscript:BL88815_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL88815_cuf0

>transcript:BL88815_cuf0-protein ID=transcript:BL88815_cuf0-protein|Name=transcript:BL88815_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=109bp
MQRKGRNNCERKRPLSGSFSLPKHKRGEVSPLLCKPSLKVTEGCRKGRNN
CEGKRPLSGSFSLPKHKSGLCKQNLYATEGYLKDRNNCEGKRPLSGSFSL
PKHKRGEIP
Run BLAST on NCBI

mRNA from alignment at Sc0000177:79486..80084-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL88815_cuf0 ID=transcript:BL88815_cuf0|Name=transcript:BL88815_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=599bp|location=Sequence derived from alignment at Sc0000177:79486..80084- (Branchiostoma lanceolatum)
TGCCCGCCGACCTATAGATTTTCAATCCGGGGGAGTTGTTAGCTCAATGT
TCCGCGTTGTTTTCTAAAACTGAGAGCACCGTCAACCCAGCCTAAAGGTA
ACAGAAGGTTAACGGAAAGGTAAAAATAACGGCGAGGATAAACGCTCGCT
TTCAGACAGCTTTTCTCTACCTAAACATAAGAGTTGGTTATGTAAACTGA
GCCTATATGCAACGAAAAGGTAGAAATAACTGCGAGAGAAAACGCCCGCT
TTCCGGCAGCTTTTCTCTACCTAAACATAAAAGGGGGGAGGTCTCCCCCC
TTCTATGTAAACCGAGCCTAAAGGTAACGGAAGGATGTCGGAAAGGTAGA
AATAACTGCGAGGGAAAACGCCCGCTTTCCGGCAGCTTTTCTCTACCTAA
ACATAAGAGTGGGTTATGTAAACAAAACCTATATGCAACGGAAGGATATC
TGAAAGATAGAAATAACTGCGAGGGAAAACGCCCGCTTTCCGGCAGCTTT
TCTCTACCTAAACATAAAAGGGGGGAGATACCTTAGAATATAACTGCTGT
TTTTTGTAAGCTGTAGCATAAACACGGATAAAAGAAGATCAACTCGAAG

Coding sequence (CDS) from alignment at Sc0000177:79486..80084-

>transcript:BL88815_cuf0 ID=transcript:BL88815_cuf0|Name=transcript:BL88815_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=330bp|location=Sequence derived from alignment at Sc0000177:79486..80084- (Branchiostoma lanceolatum)
ATGCAACGAAAAGGTAGAAATAACTGCGAGAGAAAACGCCCGCTTTCCGG
CAGCTTTTCTCTACCTAAACATAAAAGGGGGGAGGTCTCCCCCCTTCTAT
GTAAACCGAGCCTAAAGGTAACGGAAGGATGTCGGAAAGGTAGAAATAAC
TGCGAGGGAAAACGCCCGCTTTCCGGCAGCTTTTCTCTACCTAAACATAA
GAGTGGGTTATGTAAACAAAACCTATATGCAACGGAAGGATATCTGAAAG
ATAGAAATAACTGCGAGGGAAAACGCCCGCTTTCCGGCAGCTTTTCTCTA
CCTAAACATAAAAGGGGGGAGATACCTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL88815gene:BL88815Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL88815_cuf0-E1BL88815_cuf0-E1-1564476830-368801Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL88815_cuf0transcript:BL88815_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000177genomeSc0000177:79486..80084 -
Properties
Property NameValue
Transcript idBL88815_cuf0
Biotypeprotein_coding