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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88618_cuf1 >transcript:BL88618_cuf1-protein ID=transcript:BL88618_cuf1-protein|Name=transcript:BL88618_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=100bp
VSGPAAEVERIEEDEETVDWINTLKEAWKQRSLRTYSAERWSSNANYAIS
TVTSRKTGARVYALPEDLELSSVCIVIKGNSSKCKMFPQHLAGTDLISLA Run BLAST on NCBI mRNA from alignment at Sc0000103:578604..582912+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88618_cuf1 ID=transcript:BL88618_cuf1|Name=transcript:BL88618_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4309bp|location=Sequence derived from alignment at Sc0000103:578604..582912+ (Branchiostoma lanceolatum)
GTGAGTGGCCCTGCTGCAGAAGTTGAACGGATTGAAGAGGATGAGGAGAC
TGTTGACTGGATTAACACGGTACCGTGAGTAGAATCTGTACAACTTACTC
CAACTTGAGTCGATGACCGTGACATAACTTTTTTAGTCTCTACCAGACTA
ACTACGCCAGGGTTGCACTTGCAGGCTCCGTTAGTCTGTCATATGTTGGT
AGGAAGAAAGGCAATAAAATCAATCTGGTCATTTTCTGAACAAAGGCAGT
AGCTTTGGCGTTGAGATCATTAGGCCATAAATCAATTAGAGTGCGACCAG
CAGACTGCAGCTTTTTCAGTTACTCTGAGCAGACTAACTATTCTACCAAA
AACGTATAAAAAATCTTGTTAAACTACAGTTAATAGTAGAAACATTGTCT
ATCGCTGATCACGGTCTCGCCATGTGGTTTGGGTGCCATTTTGAAAAGTT
ACAGCCCGAATTCTGCCTTGTCAGACCTTGTCAATATAAAGTGAAGGATA
GCAAACCTTGTAACAAGTTCTTCAAGGTATGACTATTGTACATATCCCAA
TGAGATTTGTATTTTTCTGTTGCCAACCCAATGTGTTGATAGTGTTCTTA
TGATGAACAAAACAAACTTTAGTGATTGACAAGGCACTTCCTGTTACATG
TCCTGGGCTTGTCTGTTCTGTCACGGTCTGCTCGCAGAGCAACAAAAGGA
TCATTCAGCTATTTGGCACCTATTAGATAGTAATTACTGGACATCAAAGA
ACCTACCTGACATGTCACAGGCCCTAAACGGGCGAAATGTGATCTTCACT
GTGGACTGACTCTACTGGCTAATTACCAGTATTCCTTTTTCTGCCGAATT
GTACGATTCATACGCCCATAAGAGGGCTTGGTGGAGGCTATAACTTTTTG
TTCAGGCCAGTGACACCATTTTTGAACTGAGTTTACCCAAGCCAGTTCCA
CCAATTTTGACTGGTCAAGTCCTGATTGCCAACAGTTTGACCTGAGTTTT
AGATATCTTTCAACTTCTGCATGACTTCGGTCCCCATTTCCACTCCTGGC
AGAACAGAAAGCATCCTAGTGCCTTCGTAGCGTTTGGAGTTGAACAAAGC
GAGATGTTTGGTGGCTGTTTTGTTCTAATTCCTTTGTGTGTTTGACTTTC
TTGTTACAGCTAAAAGAAGCTTGGAAGCAGAGATCTCTAAGGACTTATTC
TGCTGAGAGGTGGTCGTCCAACGCCAACTACGCCATCTCCACGGTGACAT
CCAGAAAGACCGGTGCTCGTGTGTACGCCCTGCCAGAGGACCTGGAATTG
TCAAGTGTTTGCATCGTCATCAAGGGAAACAGTTCGAAGTGCAAAATGTT
TCCACAGCATTTGGCTGGGACTGACTTAATATCATTGGCGTGATGGGAAG
TCAATCATTTGTGATGTTGCATTCATAGCTTTAACTGAACGTACGATTCC
CTCTGTATACCCGAGGCGTTGTTGGCAGGGCAAGTCAGAATCTCTTGGTT
GGTGGTAGGGTACTTGATGTGATTTGTTGACATCCTGAGTGATGTTGTTG
CTAGGGGGTTGGGGCACTTTGTGAGTGGTGACTACTTTTGCATGCAGGAC
TTCAGACTGTTTCTGTGGTGTACAATCTCGGTGTGTGATTGGTTTAGTTT
CTGTGGCTGTGTCGATGGCTGAGATTGTTAACGGAGTGGTTGTGAAGTTC
AGTGTTTCAGAGAACGGCGATTTTCCTGGTTCTGTTAGCTTATGACTGCT
TGGAATCTTCTACCATCTGTTGTCCTTTCTGTTTATGTGGTGGTAAGTGG
GTCATCGGGAACCTAGACCACGACATAATTTGCCTTGTGTCATATCTTGG
AGTCCCGACCCTAGACAATGACACAGGGCCAGAAAGGAAGGCAGGTGGTT
GGAGAGCCTGAGTAGTTATGAGCTAACAGAACCAGGGAAATCCCTGTTCT
CTGAAACACTGAATTTTGTAGTCACTCCGAGAGCAATTCTGGCTATCGGC
ATTGTTACAGATACTGAATCTGCCATGGCATCGGGATTGTGTACCACAGA
GATAGGCTGAAGCCCTGTGTGTAGAAGTAGCTATTGCTTTTAAATGTCCT
AACCCTCCACTAGCAATTACTCAGGGTGTAATCAAAATGTGCTCAACACC
TTACCATCCATCAAGAGATCATGATTTTCTCCGCTGATGATGTTTCAGGT
AGACAGGGGATTTTGTACATTTCTAGGTTGAACCTAGAACTGAAATGACA
ATCACAAATCTTAACTTCCTGCTACGCCCCAGCGGTCTGTATATGAGGTC
TTTGTTAATGACCTCTTATAGAATGCAAAGTGTACACTTTTACAACAATC
ATGTATACAAATGCCATGTACTATGTTATGCTAGGGTCACAATTCCAAAG
CTTGCGGGAAAAAGAAATACGATATAAAAGACAGCAAAACACACAAAACT
TTTTTAAAAAGTACTCCTTTAATTGTGTATATTCTTGATACTTATTAGGC
ATTTTTCATTCTTTGTTTTCAAATAGCCTGGTCAGGCCCCGGCTTAGAAA
TGTGACCCTACTCCCTAGCATTAGAGATATATGTAGTTAAGCTATATAGT
TAGCATTAGTTAGCATTTTGAGCTAATATAGTTTTCCATTTTAGTTAAGT
TAGCTAAAAATGCTCACTAAGATAAAAAAATAGCTAAGCTAAAAATGCTT
AGCTTTTTTTATCTTGGTGAGCATTTCTAGCTTAGCATTTAATTAGTTTA
GTTAGTTAATATTTGGCAATTTTATCTCTCTTTTTTCAACGCTCTGCATT
TTTAGCTGGGTCATGAACCACTATTCTCCAAGCAGAGGTTCAGCTTGGCA
ACATAAAGAAAATGGGACAAAAAAAGGAAGTCCGCTAGAGACTCCTAAAA
CCGCGTCAAAAAACAGCCGGAGCCAATCTTTTGCTTGGAGAATAATGAGC
CACTGTCATACTTAAGTGTGTTACCATCTATACCATGTATTATGTTATGC
TAGGCTAGGGTCACAATGCCAAAGCAAAACACACAAACTTTTTTAAAGTA
CTCCTTTAGATTATGTATATTCTTGATAAGGCGCCTATCAAGAAGATACA
TAATAATGCCGGCATTTTTCATTCTTTGTTTTCAAACAGCCTGGTTTGCT
GAGAAATGTGACCCTACTCCCTAGCATTAGAGATATATGTAGTTAAGGGG
CCTTAAGTTAAGCTTATAATGTGTTAGGTAGGGTCAAGTTTAATTTTTGA
TTTTCTAATTTTTGTAGCTTTTTCCTTTTCTGCATTTTTCAAAATTTAGT
GGATGTTGATGATATCCGTGTATGGTACAGAGGTAGTTTGTAGCCTTCTT
AGTCCTATTGAATTTTGGCGAAGGCTGATGTTGGAACACACACTACACAC
AAACTGACAAACTAACGCGCACACACACAGACTCAACACACTAATCCAAA
CACTATCTGACAGAAGCCGCAAAACAACTTTCAAAAACAATCCAAAAAGT
TTCCTCTGTACCATGCATTGACTTATCAGCATTTACTGCATTTCTAACTT
AGTTAGCATCTTTAGCTTAGCTTTTCTTAGCTTAGTCACGAGCCACTATT
CTCCAAGCAGAGGTTCAGCCTGGCAACATAAGAAAACGGGACACAAAAAA
AAGTCCGATAGAGACACCTAAAACCGCGTCAAAAAACAGCCGGAGCCGAA
CTTTTGCCTGGAGAGTAATGGGCCACTGTCACACTTAATGACAGATGTTA
ATTTAGTTTTCATTTTTAGTTAACTAAAAGTGCTAACTTAAGTTGGCATC
TGTCAGCATTTTTAGCTTAGCTTTTTCTAGCTTAGTTAATATTTGGCATT
TTACCTTTTTTTTTTTCAATGCTCAGCATTTTCAGCTGAGTCACGAGCCA
CTATTCTCCAAGCAGAGGTTCGGCTTGGCAACATGAAGTACAAGTAAACG
GGACAAAAAAGAAAGTCCAATAGCAACGCCTAAAACCGCGTCATAAAACA
GCCGGAGCCGAATTTTTGCTTCGACAGTAATGACCCGCTGCCATACTCAA
TGAATGTTTACAACAGGGAGTGTGTTCATAAGATAAGCATGTCCTTTGTT
GTTATACATTCTTTGCAAAAAGGTGTTGTTCACACTTAGCCTTGTAATCA
ATAGGTTTAGTGCTATTTGTACCTTTTTGTAACACATTGTACACTTTGCA
TTCCTCCATTTTGTGAAGAACTGTTATCAAATAAACAGTTTGAAACTAGG
TGTGTAGTTTATATTTCACATTAGATTGTCAGGAAAATTGATGCTTTCTC
CCTCCCCAC Coding sequence (CDS) from alignment at Sc0000103:578604..582912+ >transcript:BL88618_cuf1 ID=transcript:BL88618_cuf1|Name=transcript:BL88618_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=606bp|location=Sequence derived from alignment at Sc0000103:578604..582912+ (Branchiostoma lanceolatum)
GTGAGTGGCCCTGCTGCAGAAGTTGAACGGATTGAAGAGGATGAGGAGAC
TGTTGACTGGATTAACACGCTAAAAGAAGCTTGGAAGCAGAGATCTCTAA
GGACTTATTCTGCTGAGAGGTGGTCGTCCAACGCCAACTACGCCATCTCC
ACGGTGACATCCAGAAAGACCGGTGCTCGTGTGTACGCCCTGCCAGAGGA
CCTGGAATTGTCAAGTGTTTGCATCGTCATCAAGGGAAACAGTTCGAAGT
GCAAAATGTTTCCACAGCATTTGGCTGGGACTGACTTAATATCATTGGCG
TGAGTGAGTGGCCCTGCTGCAGAAGTTGAACGGATTGAAGAGGATGAGGA
GACTGTTGACTGGATTAACACGCTAAAAGAAGCTTGGAAGCAGAGATCTC
TAAGGACTTATTCTGCTGAGAGGTGGTCGTCCAACGCCAACTACGCCATC
TCCACGGTGACATCCAGAAAGACCGGTGCTCGTGTGTACGCCCTGCCAGA
GGACCTGGAATTGTCAAGTGTTTGCATCGTCATCAAGGGAAACAGTTCGA
AGTGCAAAATGTTTCCACAGCATTTGGCTGGGACTGACTTAATATCATTG
GCGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000103 | genome | Sc0000103:578604..582912 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL88618_cuf1 |
| Biotype | protein_coding |
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