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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL88000_cuf0 >transcript:BL88000_cuf0-protein ID=transcript:BL88000_cuf0-protein|Name=transcript:BL88000_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=148bp
MSYCKEQGKDKIIFVTKEDHETPSTADITYNAEEDDDSPGLILPNGEINW
QCPCLGGMASGPCGEPFKEAFSCFHYSPAEPKGSDCIEEFRNMQECMSKY
PELYPYDKDEENDKGADEQTKTTTTTTVEEKTSEEVAVSKESAATRAS Run BLAST on NCBI mRNA from alignment at Sc0000083:233939..241160- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL88000_cuf0 ID=transcript:BL88000_cuf0|Name=transcript:BL88000_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=7222bp|location=Sequence derived from alignment at Sc0000083:233939..241160- (Branchiostoma lanceolatum)
GCGAGATTCCGCGAGTGTTACACAAAATTTCACGCGAGATTTTCCGAGAG
TTACGAAACTGGAAAACCAGACATGCGCAGTGGGTCACCTTGAAGAACAT
GTGTGTATCACTGTGATATAATATTTTCTGGTTTTTAGCAGCCTGGTTTT
TAGATACAGTTTTGTGCAATTTTCTCAAAAAAGCGATCAGAGCTGGGATC
ATGTCTTACTGCAAGGAACAAGGTAAAGACGGCTGGAGTTCTTTTTGTTT
TGTCTGATTGTGTAAAACGTGCTCTGTTGGTCAAAAATCACTTTTCTGCA
CTAGCTGCCCCCCTCCCCCATCTAGCATGTTCCATCACTGTTTTGGTTAT
ATTTGTATGGTTAAGAAATCACATATTTAAGTTTACAGCAGCAGGAGTGA
CTGATTCAAATATCAAATGTGACGTAAACTTTGTTATATGGTTAATATTC
AAATCTTATTCCTGTAAATGCAGATGTTCGCGCTGGATTTATATTTGTGG
ATTTTGCGGCGACCATTTCACCGCTAACTTCCGCAAACATTTTTATCCAA
TACTGTAACATCATGTGACTGTAGCGCTGCTGCGAACTTAAAACCACTGC
AAACACTCCATTTGCGCCTTAACGCGAAATAAAAACCACGCGAACTTGAA
TACATTGTGTGTAAAATCTTGATGAAACCTCCTTGGTAAAATTTACTTTT
TTTGTTGACACCTCGGGGACAGAGGCATAATTTTTTTTCATAATTTTTGG
AGTTTGTTGTCGCAAGTTTTCAGTGACTTTTCGATTGTCGACAATTTGCA
ATACGAACAATCACTATGACATGTGACGTCACAGTCAGTGTTTCCGCCAG
AGGGGCGTCTTCCCGTCAAATGACGGCCTTATGTCGCTTTGGACGGCCTG
AAGTCAGACATAGGCTGTCCTCTTTAAAAAAAGACAAACTAAATCGTAAA
TGCCGAGAAATCGAGAAAAAAATACGAGAGGTCGGCATAATTTCTTTGTT
TTTCTTTGTTACTGCGGGCGTGGGGACGCTCTATATTGTGGACATTGACA
CTCTTTTGTTTGTTGCTATTGTTATGCTTGCGAAGAATCGATGTCGGTGC
CTTTGGCATACGGTGATCTCATTAAAAACCCGTTTTTCAAGACTCAATCG
AAGAAAGTCATTGAAGAAAACAAGGAAAAACGTCAACAAAACAAGAATTT
CGTCGTGATTTGCCATTTTCTGACCATATTCGACGCAATATATATTCCCA
CTGATATATTCCTTTGAATGTTTTTCCGTGAAAATTCTCCATATGTACCG
TAGATAAACCGTATTTTCGCTATGAATTCACATAAGTCATGAAGCTCGCT
CGAGTCGCAACCTGCCCCGTCCCGGGCCGTCCGCCATGTTTTTAAGTCAT
TGATATGCAAGGTTCTAAGCGCTGATTGGTCCGCGTCATAAAACCTGTGC
TCTGATTGGTTGACGGCAAGATGTCACGTGACCACAGGGCGGGAAAACCC
CTTTACACTTCAGGTGTTTCTGGTCAATATAGATAGCATTTTGTGACGAT
TGAAGCAGTATTATAGCGACCTTCGTAACGAATTGATTTTGAAAAATTAA
CAAAGTCTTTTCTGATCACAACATTCAGTTGCTTTTCCTGGTCAATTTAT
TTTCGGGGTATGGTCAATTAATTTTCGCGGTACGGTCAATTAATTTTCGC
GGTACGACCCTCCCCAAGTGGACGGCCTCTCAGTCGCGGTCTGGCGGAAA
CACTGGTCACAGTGGTTGGCAAAAAGCAGGTGCTAGGCAAAATATTAATT
TTCATGTTGATTGGTAATCTCAGTGTTCTCGCCAGGTATTTTTCACAGCA
TCGGGGCAGGGGTTCGGGGGCTGCCTTAAGCCCCCGACGGGGTCCAGGGG
CAGAGCCCCGGTGGGGGGACCAGGGGGGGCGAAGCCCCCCGGAAGCTCTT
GCATTTTAGGGTATTGAGAAGGCTTTTTTTCCAGTTTTGAGGGTCATATT
TATGACAATCGACATACAATACTTCTGGTGAAAGACAACTTGAAACTCAG
AAACAACAATATCAATAGTTTATTTAGCTACTCAACAATATCAATAGTCG
ATACCAGTTTTCCTTTTTTTGGCTGTGTCCGGCTGTCCTAAGTCGAAGCG
CAACAATCGTCGCTGTCAGAAGTTTTCTTCGGTGCGAAATTGGAAGCGAT
ATTCCTGGTATAGTACGCTTCGACGCCGGCATGTTTCCAGAAAAATCGCC
GCCGAGGTGATCTTCCCTCGGCGGTCGGCGGCGAAAATCCTAATACGAAA
GTCCCTTGCCGCGGCCCTTGGCCCGTCTAAGAAATCGCGTCACCCCTCTC
CCCCAAGTACATACGCCGCCGGCCCGTTCCAGGAAGCCGAAACCGCTGTT
CTGCGTCTTACAGATAACGTGGAACTTCCGTCTAATAAAAACTTTGTACA
AGCATCGCTGTGGGAAAGTTAAGGGAACGTAAAATCGTCAGAGGTTCGCT
GTTGACTGGCACACGGAGATCCAACTCGCGCGTTTTCCCACAAAGTTGCC
GCTGATTGACAGTCGGCAGCCTTTGATGACAGTCGCGACCATGGCGACGT
CGGCGGCAGAAAGTCTGCTAAAAGGAAAGTCGGCGGTTTGTGGGCGGTGC
CACAAATTTGCAGTAGCCGAATCGTCCAATCATGGCGAAGCTTCTAAATA
AGTTGAAACTTTATCTTCCTCTCTTTGTAAAAATGAATTTTCTGTGCATT
AATTCGCTGTTATGGATGGGAAAATGACGTAACCTTGCTCTGGAAATTTG
TCAGAAATACCGTTAAGAATTAATTCTATCCCCGCGCTGACAGAGAAAGG
AATCTTTTACAAAGAACAGCTTCTGTATTGGTCAACCGCGGACTGTTAAC
TTCCAAATAAGGAGATTCCCCGGGAATCTGATACATTTACGGCTGTTCTG
ATAGTCGGGAACCGCCCCGCAGATTGTGCACATGGAGACCTACTCGGTTA
TTGTTTACGTTTTCGCGCGATGCTGCCAGCGGCACACGAGCCGCTAAGGG
CTTTTCCCGGGTTGGAGGGGCGGCGAGACAAGATCGGAGCGGTAGGGCGG
GGTGCTAATTTAGTAATTGGCACCTCCCTTGGAGCCGATAACTGGATGGC
TTCCTGCGAAACAGGGGAGGCGCGTGCCTTTGCATTTTTACTACGGTATT
TTTGTCTTTTTTCGCCGCTACGCTGGGTAAAAAAACAGCATAGCGGGTGA
TTTACAGCGTCGGTTTGTCGGCCCACAGCGTAGCGGCCCGCTATGCTCAA
AAGGCCTGGCGAGAACACTGAATCTGATCTGCTAATTTGCATATTAATCA
GTAATTTGATCAACTGTAAAATACCCTTGCCTAAACAAAAAAGTGACTAC
TCATATGGTAGAAGCAGTATTTAGTCTGGTACACATGTACCAACATTACT
TGAAATGAATGATATGAAATGTGACCCACATCCTTGAAGAGACGTCGGGT
ATTTATCTCGGGCTGTTCGTGCAACTGCACCACGGCCTCGCCACAGCATG
CATTTTTGGCCAAGCACATCAGGTCACCCCTACATGTACCTCTCTCGATA
AGTGCGTTGGGTTCTTTTACGTGCAGAGGTTTGACGCTTGAGGCTTATTG
CCGAAGCTCCCTCATACACGGGGCCGCCGGCTTTACATCACCATCCGAAA
TGACAAATGCAATCCTTTACAACATGTCCGAGCTGAAGTTGACCCTAGGA
TCTAACTCGGGTCCCAGGATCTACGGAATTTGATCCAGATGTCGAAGCAG
CGGGGTTGTGTTACCGCTTGCACCATGGGGACATGTTTTTGGTGATCTTT
TGAACATTTCTGGACAACAGGACAATATCCATCAATGTGCTTAGATAGCA
ACCATTAAATCAGATTTACATATTATATAGTATATACACAGGTACATGTG
TCTTGGAGAGCTCTCACACCTCAAGAAGGGCATTTTTCTGATCTCCAAGC
AGATGTTGGGTGGAAGATCATAGCTTTTCTGACAGCCAAGCTTCTCTGAC
AGCCTCCTACACAAAGTGCCATGGGAATGACTGTCACAGAAGCCTGGCAG
TTAGAAAACTTCAATATCTGCTTGGAGTAAAGCATTTTTTACGTACCATA
TATGCTGAGTCATGGATCCTTTAGCACATGTATATGGAAGTGCTTGCTCA
ATGAATTAGTGTCTGTGAACATAAAACCACCGCGAACATTTATGCATTTA
CAGTATTGTACACTAGTTAACTTGACACCCGCCATTATATGGACATCTAA
GTATCAGGACAAATGATTATAAGAAACCTTTGTTTTTTTAAGTCAGCTGT
AGAATTTGGGTTCAATGTAATTTTTCAAAGCTCTAACTTAGTTGTGTTCG
CACTGGTACATGCCCACATTGAGTTCCTCGCATCGACTTCCGGATTTTGG
CTTCCAGATTCGACCCTGAACTATGAGAACTTGTGTCGCACACAAATGTA
ACATCACTGTATCCATATCCGCAAGTTTTCTATGTTGCCATGACTACAAA
CAAAAACACTCCTATCTTTTGCGACCTTTGGTATTAAAGTGCTTACCTGA
AATACCATAACACACGTTTTTCTGAAGTCTTAGTGATCCGTTATTGCTTT
GGCATTTATGAAACCTCCTCTAAGTGATTTAAAAAAAGAAGTGATATTTG
ATGTAACATTTACATTGTTCTCTGACTGGGCAAGTCTCAGGTGGTAATTT
TGGTCGAAAGATTGGACGGTTGTGCCCAAGTAGTGTAGATTTGCTGCCTG
ACTTTTTCTTTGTCGATCTTGTAATTCGGCTAAACCACAAAGCGACCCCC
TAAGTCACAGTAAGCGCAAGTTAGTGCTTACGGATTCAGACATGTCAATC
ATTCGCACTCAGCCTTGAAAAGGAGGTTAAACAATCATAACAAATTGGAA
CGGCTTTTCGCGGTGGTTTTTAAGTTCGTTGTAAAGAGTTCACCCCGAAG
ATAAAACCAACCCGAACATTTCTGCATTAAACAGCACTAATTATTAGCTT
GATGAAATTTTTTTTTTCTATTTTCCTCCAGGAAAAGACAAGATCATTTT
TGTCACCAAGGAGGACCACGAGACCCCCTCCACAGCTGACATCACTTACA
ATGCAGAAGAAGATGACGACAGTCCAGGTAAGAAGCTTACATGAATGAGA
AGTCTGTATGACCCAAACTCCAGCTGTCCGGGACTGTAATGGCCCATCTC
CGTTCAAAAGAGCAGGGCTGAGACCAGGAGTGTTTGCCGAGCATTTCCCA
AGCTGGTTTCAGCTTAAAGGCACCCAGAGCATTTTATGAGGCTTAAAAAC
TGGAAGTATTTTAGCTGCTGTAATCTTTATGAAATTGACATTTAATGCCA
CTGTTAAACCTCGATTGCGTGCAGATTTTTTATCAAAAGCGGCACAAAAA
TAAGCTTCATAGTTATCTTTTAGTTTCACGCGCCTAGTGTAAATAGACCG
ATACCATAGCTCCGCCCACCTCCGTCAAAACGTAGAAATGCAAAATTAAA
ACATAGAAATGCAAATATTTGACGGACATGCAGTCACTCTCTCATTGGTC
GAACCGCTAATTGTGATGGACAGTCAGGATCAGTCTATAAGGGCTTGGAT
TTTCTATCAGTTCTCACAACACAATGACATCGTATCTAGCTCGATCTTTG
CTCCTTTAATGTCGATATAGAATGGTATAGTGTTTTTGAAGCTTACTATG
TGTAGGAATGACTAGAAATGGCCGTTCTTATATTCAAGTTTCAAGCCTTA
TAAAATGCTCTGGATGCCTTAAGGAGGGTGAAAAGCTGGACTCAAGCCAA
GGCTATGCTTGTACATTTTGTATGTCAGTCACCCTTCTGTTGCAAGCTTA
ATATTATAGTGATTCTTCCCAGTCTTTCAGTTTTAACCTTTGCATAACTA
GCAATATCTACCTTGTGTTAGATGTTATTTTTTTCCATTTTCCAACAGGA
CTGATCCTTCCCAACGGAGAGATCAACTGGCAGTGCCCGTGTTTAGGCGG
CATGGCCAGCGGACCCTGCGGCGAACCCTTCAAGGAGGCGTTCTCGTGTT
TCCACTACAGCCCCGCCGAACCCAAGGGCTCTGACTGCATCGAAGAGTTC
CGCAACATGCAGGAATGCATGTCCAAATACCCCGAGTTGTACCCCTACGA
CAAGGACGAGGAAAACGACAAGGGAGCGGACGAACAAACAAAAACAACAA
CAACAACAACAGTGGAAGAGAAAACAAGCGAGGAGGTAGCAGTGTCAAAG
GAATCCGCGGCTACTCGAGCAAGCTAACCAAAATCCACTTTATTTCTAGC
TTGTATTAAAGAAATCTTTCAACATATATACTATAAAGTTACGCATGTTC
AGTAAGCAATTTGTGATTATACATTGTAGATACTTATGAAACAGATTGAT
CCTCTGCGTTTGTTAATTACCTGTTGAAATATCTATAGAATGAATGAACA
TGTAGGCAGGGCTAATGTCAATTTAAAGACAGACGTTTTTTCCAGCCCAG
AAAACATACACAAACAAAGGTTTACAATTTTGAAAGAAAAGAAAAAAAAT
TGGTAAAAAGAACAATGTTCAACTTCAAGCAAAGAGACCTCAAGATATGC
ATTCTAACATTATGTGTACTTAGGCCACACCAATTTAATTTCAAGGTTAA
CTGATTTTTTTTGTAAGATTTTAGCATGAGGACATCATTAAAACAGAAGG
CTGGGATGAAACTTGCACATGACCCTGTTCACTCCCTGAAACTGTGTGCA
CCAAATTAAAAACTTTTCTGTGAGATCCTGTTTTCATATTGATTTTCCAG
TCTAGCATTTTTTTAAAGATTCCGTTAACCAAGAAATAAAATTGGTGTGG
CCTTATGATATGATGATAACTAGGGATTTTGAGTTCTATATGCTGTTGCT
GTTTTCAAACTGAACCTTTTTCAGAGTCTCGTTATACTGAAAACCAGAGA
ATTGTGTTTCTAATATCAAAGGGTCCAGATTTGCATGTACAAACCTTTAT
TGTAGCGTGATTAAAAAAATTATGTGATGTGTGTTATTGAAAAACAGAAT
CAAAAGAAGGCATAAATTGATGTTCAGCCAGTACCTCAGAGACCAGTGTG
TTTATTGGAAAACAATAAAACTTACAGATTTTTGTACAGAAATGTCTCTC
TCTCTCTTTCATACATTTATTG Coding sequence (CDS) from alignment at Sc0000083:233939..241160- >transcript:BL88000_cuf0 ID=transcript:BL88000_cuf0|Name=transcript:BL88000_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1341bp|location=Sequence derived from alignment at Sc0000083:233939..241160- (Branchiostoma lanceolatum)
ATGTCTTACTGCAAGGAACAAGGAAAAGACAAGATCATTTTTGTCACCAA
GGAGGACCACGAGACCCCCTCCACAGCTGACATCACTTACAATGCAGAAG
AAGATGACGACAGTCCAGGACTGATCCTTCCCAACGGAGAGATCAACTGG
CAGTGCCCGTGTTTAGGCGGCATGGCCAGCGGACCCTGCGGCGAACCCTT
CAAGGAGGCGTTCTCGTGTTTCCACTACAGCCCCGCCGAACCCAAGGGCT
CTGACTGCATCGAAGAGTTCCGCAACATGCAGGAATGCATGTCCAAATAC
CCCGAGTTGTACCCCTACGACAAGGACGAGGAAAACGACAAGGGAGCGGA
CGAACAAACAAAAACAACAACAACAACAACAGTGGAAGAGAAAACAAGCG
AGGAGGTAGCAGTGTCAAAGGAATCCGCGGCTACTCGAGCAAGCTAAATG
TCTTACTGCAAGGAACAAGGAAAAGACAAGATCATTTTTGTCACCAAGGA
GGACCACGAGACCCCCTCCACAGCTGACATCACTTACAATGCAGAAGAAG
ATGACGACAGTCCAGGACTGATCCTTCCCAACGGAGAGATCAACTGGCAG
TGCCCGTGTTTAGGCGGCATGGCCAGCGGACCCTGCGGCGAACCCTTCAA
GGAGGCGTTCTCGTGTTTCCACTACAGCCCCGCCGAACCCAAGGGCTCTG
ACTGCATCGAAGAGTTCCGCAACATGCAGGAATGCATGTCCAAATACCCC
GAGTTGTACCCCTACGACAAGGACGAGGAAAACGACAAGGGAGCGGACGA
ACAAACAAAAACAACAACAACAACAACAGTGGAAGAGAAAACAAGCGAGG
AGGTAGCAGTGTCAAAGGAATCCGCGGCTACTCGAGCAAGCTAAATGTCT
TACTGCAAGGAACAAGGAAAAGACAAGATCATTTTTGTCACCAAGGAGGA
CCACGAGACCCCCTCCACAGCTGACATCACTTACAATGCAGAAGAAGATG
ACGACAGTCCAGGACTGATCCTTCCCAACGGAGAGATCAACTGGCAGTGC
CCGTGTTTAGGCGGCATGGCCAGCGGACCCTGCGGCGAACCCTTCAAGGA
GGCGTTCTCGTGTTTCCACTACAGCCCCGCCGAACCCAAGGGCTCTGACT
GCATCGAAGAGTTCCGCAACATGCAGGAATGCATGTCCAAATACCCCGAG
TTGTACCCCTACGACAAGGACGAGGAAAACGACAAGGGAGCGGACGAACA
AACAAAAACAACAACAACAACAACAGTGGAAGAGAAAACAAGCGAGGAGG
TAGCAGTGTCAAAGGAATCCGCGGCTACTCGAGCAAGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000083 | genome | Sc0000083:233939..241160 - |
Properties
| Property Name | Value |
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| Transcript id | BL88000_cuf0 |
| Biotype | protein_coding |
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