transcript:BL87943_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL87943_cuf0
Unique Nametranscript:BL87943_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL87943_cuf0

>transcript:BL87943_cuf0-protein ID=transcript:BL87943_cuf0-protein|Name=transcript:BL87943_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=116bp
WSYVGAGVPQGSVLGPLLFLVFINDMVDGLVTCPFLFADDSSLLDIVEDP
NVTADRLNTDLRKISFWSSTWLMNLNPLKTEEMCFSKKSNPPDHPPLLLD
NCVIKSVKTHKHIGTF
Run BLAST on NCBI

mRNA from alignment at Sc0000059:1689373..1689723-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL87943_cuf0 ID=transcript:BL87943_cuf0|Name=transcript:BL87943_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=351bp|location=Sequence derived from alignment at Sc0000059:1689373..1689723- (Branchiostoma lanceolatum)
ATTGGAGTTATGTTGGCGCAGGTGTACCTCAGGGTTCAGTTTTAGGGCCT
CTCTTATTCCTTGTCTTCATTAATGACATGGTGGACGGTCTAGTTACATG
CCCCTTTTTATTTGCTGACGATAGTTCATTATTGGACATTGTGGAAGATC
CTAACGTTACAGCTGATCGACTCAATACTGATCTTAGGAAGATATCATTT
TGGTCTTCAACATGGCTTATGAACCTAAACCCTTTAAAGACTGAAGAAAT
GTGTTTTTCTAAGAAATCAAATCCTCCCGACCACCCCCCTCTTCTTCTTG
ATAACTGTGTTATCAAATCAGTCAAAACCCACAAGCATATAGGGACTTTT
C

Coding sequence (CDS) from alignment at Sc0000059:1689373..1689723-

>transcript:BL87943_cuf0 ID=transcript:BL87943_cuf0|Name=transcript:BL87943_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=348bp|location=Sequence derived from alignment at Sc0000059:1689373..1689723- (Branchiostoma lanceolatum)
TGGAGTTATGTTGGCGCAGGTGTACCTCAGGGTTCAGTTTTAGGGCCTCT
CTTATTCCTTGTCTTCATTAATGACATGGTGGACGGTCTAGTTACATGCC
CCTTTTTATTTGCTGACGATAGTTCATTATTGGACATTGTGGAAGATCCT
AACGTTACAGCTGATCGACTCAATACTGATCTTAGGAAGATATCATTTTG
GTCTTCAACATGGCTTATGAACCTAAACCCTTTAAAGACTGAAGAAATGT
GTTTTTCTAAGAAATCAAATCCTCCCGACCACCCCCCTCTTCTTCTTGAT
AACTGTGTTATCAAATCAGTCAAAACCCACAAGCATATAGGGACTTTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL87943gene:BL87943Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL87943_cuf0-E1BL87943_cuf0-E1-1564476830-244144Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL87943_cuf0transcript:BL87943_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000059genomeSc0000059:1689373..1689723 -
Properties
Property NameValue
Transcript idBL87943_cuf0
Biotypeprotein_coding