transcript:BL84351_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL84351_cuf0
Unique Nametranscript:BL84351_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL84351_cuf0

>transcript:BL84351_cuf0-protein ID=transcript:BL84351_cuf0-protein|Name=transcript:BL84351_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=158bp
VFYHQGDTVEPYVRSPYVFDVPQYHIGEVETAGESRAKVEEAISTLTDAC
EHTGRNWEVSDDNTVDNQVPNLNIGSCMNEVKPNTIEPYARSPYVFDVTQ
YHTGEVDTAGEPSPNKQENPNTQTGEGTQEQECHNGQDFDENEIDDVKQW
FDKIMTSG
Run BLAST on NCBI

mRNA from alignment at Sc0000001:2010175..2010650+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL84351_cuf0 ID=transcript:BL84351_cuf0|Name=transcript:BL84351_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=476bp|location=Sequence derived from alignment at Sc0000001:2010175..2010650+ (Branchiostoma lanceolatum)
GTTTTTTATCACCAAGGTGACACAGTTGAACCGTATGTAAGGTCTCCCTA
TGTCTTTGATGTTCCTCAATATCATATTGGAGAAGTTGAAACGGCAGGTG
AATCCAGGGCTAAGGTAGAAGAAGCTATCAGTACTTTAACTGACGCTTGT
GAGCATACAGGCCGCAATTGGGAAGTTTCCGATGACAACACGGTTGATAA
TCAGGTGCCAAATTTAAATATAGGCTCCTGCATGAATGAGGTTAAACCTA
ACACGATCGAACCGTATGCAAGGTCGCCTTACGTTTTTGATGTAACCCAA
TATCATACTGGGGAGGTTGATACGGCAGGTGAACCCAGTCCTAACAAACA
AGAAAATCCGAACACTCAAACCGGGGAAGGGACGCAGGAGCAGGAATGCC
ACAATGGTCAGGATTTCGATGAAAATGAAATTGATGATGTAAAGCAGTGG
TTTGACAAAATTATGACCTCTGGTCT

Coding sequence (CDS) from alignment at Sc0000001:2010175..2010650+

>transcript:BL84351_cuf0 ID=transcript:BL84351_cuf0|Name=transcript:BL84351_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=474bp|location=Sequence derived from alignment at Sc0000001:2010175..2010650+ (Branchiostoma lanceolatum)
GTTTTTTATCACCAAGGTGACACAGTTGAACCGTATGTAAGGTCTCCCTA
TGTCTTTGATGTTCCTCAATATCATATTGGAGAAGTTGAAACGGCAGGTG
AATCCAGGGCTAAGGTAGAAGAAGCTATCAGTACTTTAACTGACGCTTGT
GAGCATACAGGCCGCAATTGGGAAGTTTCCGATGACAACACGGTTGATAA
TCAGGTGCCAAATTTAAATATAGGCTCCTGCATGAATGAGGTTAAACCTA
ACACGATCGAACCGTATGCAAGGTCGCCTTACGTTTTTGATGTAACCCAA
TATCATACTGGGGAGGTTGATACGGCAGGTGAACCCAGTCCTAACAAACA
AGAAAATCCGAACACTCAAACCGGGGAAGGGACGCAGGAGCAGGAATGCC
ACAATGGTCAGGATTTCGATGAAAATGAAATTGATGATGTAAAGCAGTGG
TTTGACAAAATTATGACCTCTGGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL84351gene:BL84351Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL84351_cuf0-E1BL84351_cuf0-E1-1564476830-21884Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL84351_cuf0transcript:BL84351_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:2010175..2010650 +
Properties
Property NameValue
Transcript idBL84351_cuf0
Biotypeprotein_coding