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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL83101_cuf1 >transcript:BL83101_cuf1-protein ID=transcript:BL83101_cuf1-protein|Name=transcript:BL83101_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=249bp
GRAKLAFCFALSLVWSTGMLLVAVTMKNSFLFLLLSATCWADPELQATQT
SHQSPAGCMNNITIMSPPGVQGPPGPPGDYGEPGRPGNQGPPGKLGPQGL
PGAPGSTTDPPVHVAFTAVRTSNFGPNNEETTIPFQVVHTNIGGHFDKDT
GHFTSPARAVYHFSFNFLSRSSDYNLFVILKHNGRKITSTYEGKGRSAGG
SAVLLLEKGDEVWLDLGKNYAIYDNANMYSSFSGFLLFIMEEDDLGKES Run BLAST on NCBI mRNA from alignment at Sc0000287:272511..280218- Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL83101_cuf1 ID=transcript:BL83101_cuf1|Name=transcript:BL83101_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=7708bp|location=Sequence derived from alignment at Sc0000287:272511..280218- (Branchiostoma lanceolatum)
GGCAGGGCTAAGCTTGCTTTTTGCTTCGCTTTGAGTTTGGTCTGGTCTAC
AGGTATGTTACTAGTAGCAGGTGAGTCTCTATTGNTGGATGCAGGCAGGG
CTAAGCTTGCTTTTTGCTTCGCTTTGAGTTTGGTCTGGTCTACAGGTATG
TTACTAGTAGCAGGTGAGTCTCTATTGTACATCATTAGGGGGTATGTATA
CTGAAAATAATGCATTTTTGTGGGAGTTCATTTGACATACAGTGGAAGTT
ACAGTTGAAACAATACTGTAGTTCTGTAGAAAAACATTTGGAAAATTTGC
TGTCAGCGTTAATTCTCCTCCAAAAACTGCAAAAATTAAACCACTGCAAA
AGTTTACAGATTTACATTCTGTAGGAACTGAAGAAGACTCTAGTCTGGGT
GTCTAGGATTATAATAAATCAAATGGATTTTTAAAAATCACCCTGGAATT
ACAGTTGAAGTTCAGTGCTTAAAAGATTGTAAACTTTGTGCAGAAGAGAA
CTACATTTTGTATATTGCAATGAAGTCCTTAACTTACTTGAATCTGCCAG
CAATAGTATCCAAAACAAACTATAAACAAGATTGGCAACATAAAAAGATG
TTGCCATGGCGACGGTGGTCTCTGTTAACGTTTTCGTTTTTAGCCCACAT
GCAAATAAGGACCTCCCATAATAGCGGCATAAATCATATCAGTCGATCAC
CTTCTCTACCAAAATAACACAAGTTGTCCAATGTATGACAATCTTGTTTT
CACAAAAAAAGATATCGTACCATTTCCTCATAAATTATGTAATTGAGGCC
CTCTATGCAACATTTGTGTCTAATAGTGGCCACATTTACTTAACTTCCAA
ATGGTGCAAAAATGAAATCCCCATCATTTACCACTATGGATTTTTAGCAT
TTTGTCATTAATTATGCAAATTAAGTATCAATATGCATAATTGATATCTA
TCGCCATTTATCTCTTTCTCAGTTACATATGTCATGTGTTTGAGAGTCCT
ATAATAGAATGCAGCTGATTTATCAACTGTCCCCATTAATTATGCAAATC
AGATATTGATTTGCATAATTGGCATATGATTATGTTAATTATCACTTAAG
CTATGTACACATCAAAAACTATGATGATCCGTCATCCCCTTCTTGCGTTA
TTCTCTTTCAAAGTTTGAGTCAAAATCAGCTCCTGCAGTTCCAAAAAAAG
CCGCTAGGGGGTCCAAATCTACAGGACATATTTTCCTAACAAAGAGCTAT
CCACCACTTAAAAATCATGACTANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGAGCTTCAAAATTTAGGGGCATATT
TTCTGAAAGTGCTATGGTCATGATTTTTGTGTGGTAGATAGTTCATGCCA
CAGAAAGTAAGTTCTGTAAATTTTGGCCCCCTAGCGGCTTGTTAAGAACC
GCAGTGGGTGTTTTTGTTTTGACATTCGGACATGAATAACTTGAGAATGG
GTCGACAGATCGTCGTGATGTTTGGTATGTAGAGAGCTCGGATGGTGCTT
TACATAATCAATGACTAATTATGCAAATAAGGAGCTAATTTGCATAATTA
GTAAGGAAAGTTTGTTAACCAACTGCCTTTCAATGGGACATGGGATAGTG
TCAGGTTATGTAAACAGATAGCCTTGCATAAACGTACATGTAGGTCAAAT
AAATAAACTATTCTCCAAGCAGAGGTGTGGAACCTGCTGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNACGAAATGGAACGAAATGGAACGAAAT
GGAACGAACTAAAACATATGTAACATTATGAAATGAAATACCAGTAGATA
GCGAAATATAAGGAACGTTGTAACATTCAGAGTAGACCGGAACAGGAAGT
AAAATACATAATATAACGTGTGTTATTTCTTGAATCTATTTGGTAATACT
AAATACAACGTTTTTGCCGCGTTTTTGTGGCTAGATTCTTCCCTGAAAAA
GAGCTCGGCCGTTCTTCCTTGATTTTACCAATTATCTGCAAATGAACTGC
TGGAAATAGCAGGGAAAACAAGCTAACGGAACTGAGTATCGAAGTTAGGA
CTAGATTATACAGAAGTTGGTGGTAACATTGCATCTCATAATTCACCAAG
AGGGCATGANAGCAAACGGAACTGAGTATCGAAGTAAGGACTAGATTATA
CAGAAGTTGGTGGTAACATTGCATCTCATAATTCACCAAGAGGGCATGAG
GCAAGCGTAATTTCATTATTCATACAGCGTGTTTGCGTGTTGTGTGAACC
GTGAAATACATTTCCTGCTCGTTCACACCCTCCCTTTGTTTTGCCGTGAA
CAAGGAAGCAGAAATGTCTCCAGAGGTAGTTCCCAGTCCACGTCCGTGAT
TGAATGGAGTGTGAAGTGTCACATTGGTGACGCAGCGCAGAGCTGCATTT
GCATATCATTAACGGAGGGGTCCATTCTCCGACAGCCGACCAGCCGAACA
ATTGGGTGTATATAAAATCGTTGTTGCGCATATATGCATATGCTACGTAC
TAGTTATGGACTAAAACCGTATGTAAATAAAACTGAGAAGTCGGAGTTTG
ATTCAACCTGTCGGTAGCACGCCCACGTGCACAGTTACGGTGCGCTGGCA
ACAGTGGCGGTTCATTTGCATGCGGGGCTCCATTTGCAACACGCAAACAC
GCTGTATAAATAATGAAATTACGCTTGCCTCATGCCCTCTTGGTGAATTA
TGAGATGCAATGTTACCACCAACTTCTGTATAATCTAGTCCTTACTTCGA
TATTTGTTTGCTTGTTTTCCCTGCTATTTTTTGCAGTTCATTTGCAGATC
TTTGGTAAAATCAAGGAAGAGCGGCCGAGCCCTTTGCACGCGGCGCCCCC
ATTTTCAGGGAAGAATCTAGCCACACAAACGCGGTAAAACGTTGTATTTA
CTATTATCAAACAGATTAAAGAAATAAAACACGTTATACAGTAGAATCCG
CTTAACTGCACCACGCATTTGTCAGCGTTTTTGGTGCAATTATCCGGCTG
GTGCAATTATGCGAAATACCCAGCTGGACCGTACCACCATGGGCGGGGGG
GTGTATTGTTAGTCAGAAACACTAGCACAAAGAAAATAGACGAAATTATG
CAGTTATTAACTTTATTTACGTATTCAAGGACATGTACCGTACAAAAATC
TGTACAGATTAAACTTAACATTTTTTTGCTTCCTCACAGACAAAATGACA
GATGTTTAAATCAGTAGCTACACGTAACGTTACATGGGAGGCATTCTGAA
ACATCGTCATGGGATAACAGTTTCTGTGTTACATTACGTAGAGTACAGTT
GTCGATTTACGTACATCATGTACCGCAATGAAGCTAGCAATTCAAACTAA
AACTTGGTTACTGATTACGGTTCAGCCCAGTGTAGTTCCCCCGTCTCATG
TCTGGACAGATTTGACTGTCGGCACCATGGTACTAGTGAATTGTACAGTG
TATCTAGTGGGCAGATATGGTTAGATGACTCAGATCAAGGACAGATCATA
CCCGCGTGTAGAGGCTCGTTCCGGTGAATGCAGGAAGTTTCTAGGACGCG
GATTCAGCCAGATGATCACGTTAGCACCGCACCGCCAAAAGCCACTGTTT
TGTCCGCCTACACGTCTGTAGCCCTTGCCGAGCCTCTATTGTTTCCGACT
AGATGTAACGTTATATAAAGACGCCGGTCTTTTATCATCAGCAGCAGTAT
GTAGCGCTGCCGCAAACCTCAAACCACCGACAACACCCCATGCCATCCTT
AACGCGAAATCAAATCCACGCGAACTTGAATGCATTCACAGTAATAAGAC
AGTAGTACAGGTAGAGACCAATCTTTATTGAGTACAGCTTGCTGTCTGCC
AAAGCGCAATGCCGCCTTTGGTAGGCGTGCGTCTCTTGATGGTGCCGACA
CGCCCTGGACCCGCCCGGGACCTCCCATACGATTCCAATCAACGTGACTG
TCAATGGAGACCGCCTTCTTTTGTAACTCAAAAATAGTTTTAAACATATT
GGTGGTATTGCGCCTTTAAACTGGCAGGTATCGGCTCATTTGTACCGCGT
TTGCCGATTTTTAGCGCACCTTTTTAGTTAACTTGTCGAGGATTTTGGAA
AAAAATTGGTGCAGTTATCCGACATTGGTGACAACTNGTATGGTAAGGTA
AGAGAACATTGGCAAGGGTACAGCAACAAAGATTCTGCCTTGGAATAACA
ACATGCACCCACACTTAACCACTAGCAGCTGATATCATTCTTGGCATCCA
AGGTAATGTCAATATCCTGCCCTTTCTATAGTGACAATGAAGAACTCATT
TCTGTTCCTACTGCTGAGCGCCACCTGCTGGGCTGATCCTGAACTGCAGG
CAACACAAACATCCCACCAGAGCCCGGCAGGCTGTATGAACAACATCACT
ATCATGTCACCCCCAGGGGTACAGGGGCCACCTGGGCCTCCAGGTAATAT
TATCACTTTCCGATTCTGGTACATGAATGTAGATATTGTACCTCCTGTAT
GTAATATGACCATTAACTGTTACTGTAACTGTTGTCAACTTAGCTTAAGG
CCTTTACTTTTAGGTTACATATGTAAATGTATAGCAAATGTGCCTTGTGT
ATGTGATATACCGTAAAATTCCTATTTACATACGCACCCCTCCTAACGTA
CGCAACCCCGATTTGGGGACAATTGCGGGCCTGACTCAGTGAGTTGAAAC
GTTCAGGGGAAAACCCCTCCTAACGTACGCACCCCCTCTCCAGCATTTTG
GTGGATTAAGTTAGAGGTTGACATGATCATCCTTCCGATGATGTTTACCG
ACTGGAAGGGTTACTGAGAAAATGTTTCTGGGTAGAAAATGTCAAACAAT
TTGAATATATGTATTATCTATTCTTTTATTGACTGTATCTCACCGGAGTA
AATCCGGACGAACTATGATGATGATGATGATTGATTGATTGTGTGGTAGC
ATTCCACACTTCCTTTGCATGAAGATGTACCGTACTCTCAAGCTGATATG
CGATTTTTCTGTGGAAGAACCCCTCCTAACGTACGCACCCCGACTTTGGC
GTCGGCCTGGAGCACCTGCTTGCGACTTGAAAAGTTTAAAAAGTGCGTAC
ATAAATAGGAATTTTACGGTAGTTACCTTATCAACTACCAGGGAGTATAG
TACATGTATATGCACATGTGCATGTATACAGTATATACATACAAATGTGC
ATGTACATGTACTATACTACACTGAGTTAGAATGGGACAAAATGTGTACT
ATTATAATATATTACCAGTGCTAACACATGCATAGTTGAATCAACCCTTG
CAATACCACGACTATCCCATAGGAGACTACGGTGAACCGGGACGACCAGG
TAACCAAGGCCCGCCAGGCAAGCTTGGTCCGCAAGGTCTTCCCGGCGCGC
CCGGTTCCACCACCGACCCTCCCGTTCACGTAGCCTTCACCGCTGTTCGC
ACATCCAACTTCGGCCCAAACAACGAGGAGACCACCATCCCCTTTCAAGT
AGTGCATACCAACATTGGCGGCCACTTTGACAAAGACACAGGACATTTCA
CATCCCCAGCAAGGGCTGTGTACCATTTTAGCTTTAACTTCTTGAGTAGA
TCTTCTGACTACAACCTGTTTGTGATCCTGAAGCACAACGGTCGTAAGAT
AACGTCTACGTACGAAGGGAAGGGAAGAAGTGCGGGAGGGAGCGCTGTAC
TGTTGTTAGAGAAGGGGGACGAGGTTTGGCTGGACCTGGGGAAGAATTAT
GCCATCTACGACAATGCCAACATGTACAGTTCCTTCTCTGGCTTCCTCCT
CTTTATTATGGAGGAGGATGATTTGGGAAAGGAATCGTAAGGCAGTTGTG
TGAAAGTTGAAATGAAGAATTGCTTACAACAATCAGTGTGATAAAAAGAC
AAGATGGCGGAAAAAAATGTGCACAAAAACTGAACTGTAAACGACACACT
CTTTTTATCAGTTTTAGAAGTTTTCATTATTTCTGGTGGTTTTTAAAACC
ATCAATGAGAATCAGAAAATAAGAGCAATTTGATTGCAATATATAACAAC
TTTACTCACTACATTTTGTAATTCTACATGTATAGGACTAGTCTAGACAT
TATATTTTGATAATTTGTTTGCCCTTATAAGCAATGATAACACTCTAATA
AACTCACCCTAACAAACGCAGCAGTTTTCCTGGAGTGGTTGCCCTTCACC
ACCTTGTGTGTCTCCATGGAAAGTTGGTTCACTCGCTGGAACACAAAAGA
GATCCTTGGAAACTAAAACATTATGCAAGCACACAAAAAACTATGCTAAA
ATTATGCAAAGACAGACAGACACACACAGACACACACAGACACACACATG
ATCAATGTGTTGCTTGTATCATATCTATCAGTTACATGTACATGTCAGTC
CCAGTCACATATTCAGGAGCTGACCCCACGACTTTGCTTACAAACACTCC
CCAACCAAGGTTGGCACTGGATTGGAAGTAGCCTAGAATGCATCCTATCA
ATATTCTAGCTCCACTTTGTTCCTCTAATCGCATTCAGAAGAAAATGACT
TTCCCTGCTATTTCTGAATGGAATTCAAAGTCTGCTGGCTGCTCGCCAAT
CAAGTCTCAACCACAGATGACCTTGCTCTTGACCATAGTGCAAGTTTGGC
AGAGGTCTGGAGGCTATGTGTGACAGGGGCTTTAGCAGGAAACTTTTAAA
GAAAAACATATCTAAAGCACCCACCTGCACCAGCTCAATCAACACTGGCT
CAAGGTTACTGAAGGTCGCCCTTGCTTCCACGTAGAAACTCAGCTGTTGT
TCAAAGTCTCTTCCAAAGGAAATCTGATTAAAAACAGACCAATCAGGAGT
CACAGTTAGGAACTCTTCCACGAAAAACTATAGGGGATAAATGATTGACA
GATAAGCACCTTGAACTTTTTACTCACCCTTCTGATGAAACCACAGATAA
GATTGGAG Coding sequence (CDS) from alignment at Sc0000287:272511..280218- >transcript:BL83101_cuf1 ID=transcript:BL83101_cuf1|Name=transcript:BL83101_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2250bp|location=Sequence derived from alignment at Sc0000287:272511..280218- (Branchiostoma lanceolatum)
GGCAGGGCTAAGCTTGCTTTTTGCTTCGCTTTGAGTTTGGTCTGGTCTAC
AGGTATGTTACTAGTAGCAGTGACAATGAAGAACTCATTTCTGTTCCTAC
TGCTGAGCGCCACCTGCTGGGCTGATCCTGAACTGCAGGCAACACAAACA
TCCCACCAGAGCCCGGCAGGCTGTATGAACAACATCACTATCATGTCACC
CCCAGGGGTACAGGGGCCACCTGGGCCTCCAGGAGACTACGGTGAACCGG
GACGACCAGGTAACCAAGGCCCGCCAGGCAAGCTTGGTCCGCAAGGTCTT
CCCGGCGCGCCCGGTTCCACCACCGACCCTCCCGTTCACGTAGCCTTCAC
CGCTGTTCGCACATCCAACTTCGGCCCAAACAACGAGGAGACCACCATCC
CCTTTCAAGTAGTGCATACCAACATTGGCGGCCACTTTGACAAAGACACA
GGACATTTCACATCCCCAGCAAGGGCTGTGTACCATTTTAGCTTTAACTT
CTTGAGTAGATCTTCTGACTACAACCTGTTTGTGATCCTGAAGCACAACG
GTCGTAAGATAACGTCTACGTACGAAGGGAAGGGAAGAAGTGCGGGAGGG
AGCGCTGTACTGTTGTTAGAGAAGGGGGACGAGGTTTGGCTGGACCTGGG
GAAGAATTATGCCATCTACGACAATGCCAACATGTACAGTTCCTTCTCTG
GCTTCCTCCTCTTTATTATGGAGGAGGATGATTTGGGAAAGGAATCGTAA
GGCAGGGCTAAGCTTGCTTTTTGCTTCGCTTTGAGTTTGGTCTGGTCTAC
AGGTATGTTACTAGTAGCAGTGACAATGAAGAACTCATTTCTGTTCCTAC
TGCTGAGCGCCACCTGCTGGGCTGATCCTGAACTGCAGGCAACACAAACA
TCCCACCAGAGCCCGGCAGGCTGTATGAACAACATCACTATCATGTCACC
CCCAGGGGTACAGGGGCCACCTGGGCCTCCAGGAGACTACGGTGAACCGG
GACGACCAGGTAACCAAGGCCCGCCAGGCAAGCTTGGTCCGCAAGGTCTT
CCCGGCGCGCCCGGTTCCACCACCGACCCTCCCGTTCACGTAGCCTTCAC
CGCTGTTCGCACATCCAACTTCGGCCCAAACAACGAGGAGACCACCATCC
CCTTTCAAGTAGTGCATACCAACATTGGCGGCCACTTTGACAAAGACACA
GGACATTTCACATCCCCAGCAAGGGCTGTGTACCATTTTAGCTTTAACTT
CTTGAGTAGATCTTCTGACTACAACCTGTTTGTGATCCTGAAGCACAACG
GTCGTAAGATAACGTCTACGTACGAAGGGAAGGGAAGAAGTGCGGGAGGG
AGCGCTGTACTGTTGTTAGAGAAGGGGGACGAGGTTTGGCTGGACCTGGG
GAAGAATTATGCCATCTACGACAATGCCAACATGTACAGTTCCTTCTCTG
GCTTCCTCCTCTTTATTATGGAGGAGGATGATTTGGGAAAGGAATCGTAA
GGCAGGGCTAAGCTTGCTTTTTGCTTCGCTTTGAGTTTGGTCTGGTCTAC
AGGTATGTTACTAGTAGCAGTGACAATGAAGAACTCATTTCTGTTCCTAC
TGCTGAGCGCCACCTGCTGGGCTGATCCTGAACTGCAGGCAACACAAACA
TCCCACCAGAGCCCGGCAGGCTGTATGAACAACATCACTATCATGTCACC
CCCAGGGGTACAGGGGCCACCTGGGCCTCCAGGAGACTACGGTGAACCGG
GACGACCAGGTAACCAAGGCCCGCCAGGCAAGCTTGGTCCGCAAGGTCTT
CCCGGCGCGCCCGGTTCCACCACCGACCCTCCCGTTCACGTAGCCTTCAC
CGCTGTTCGCACATCCAACTTCGGCCCAAACAACGAGGAGACCACCATCC
CCTTTCAAGTAGTGCATACCAACATTGGCGGCCACTTTGACAAAGACACA
GGACATTTCACATCCCCAGCAAGGGCTGTGTACCATTTTAGCTTTAACTT
CTTGAGTAGATCTTCTGACTACAACCTGTTTGTGATCCTGAAGCACAACG
GTCGTAAGATAACGTCTACGTACGAAGGGAAGGGAAGAAGTGCGGGAGGG
AGCGCTGTACTGTTGTTAGAGAAGGGGGACGAGGTTTGGCTGGACCTGGG
GAAGAATTATGCCATCTACGACAATGCCAACATGTACAGTTCCTTCTCTG
GCTTCCTCCTCTTTATTATGGAGGAGGATGATTTGGGAAAGGAATCGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000287 | genome | Sc0000287:272511..280218 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL83101_cuf1 |
| Biotype | protein_coding |
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