transcript:BL79206_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL79206_cuf0
Unique Nametranscript:BL79206_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL79206_cuf0

>transcript:BL79206_cuf0-protein ID=transcript:BL79206_cuf0-protein|Name=transcript:BL79206_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=142bp
MNMPFYDFSFLQLQHYAFDIIDIYFFRSLFMQKWTVSKSQSKNLTLINNV
CLKGNFKKTIPVQXKPSQFKMYTLIALLFFYGYSHLLIVYKSENCNNSGG
QNFDIYYYISLRLRHFTNLKHPLPNYPWKRNHCTTPKWIFPK
Run BLAST on NCBI

mRNA from alignment at Sc0000070:23612..24699-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL79206_cuf0 ID=transcript:BL79206_cuf0|Name=transcript:BL79206_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1088bp|location=Sequence derived from alignment at Sc0000070:23612..24699- (Branchiostoma lanceolatum)
CGTATGTAGCCCGACCTGTAGCGTATGTTATCCGACATATAGCCAGTTTA
GGACGCAGCTACACATGCGCTTTGCGAACAACAGGAGGGCATCGGTACGC
GGTAGACTAACTACCAGAACGAAACAGCGACCCAAAATAGACAGATGTCA
TTACGATCCATCCACCACGTTTTGTGTTCTATCTTTCAAAGTTTGAAAAA
AAATCGGGTCCTGAAGTTCCAGAAAAGCCGCTAATTTTCTGCTGCAGTGT
CATAGAAAGTTAAATCTAATCTTATCATTTCGGGGACTCACAATTGCAAA
GACAATAGACAGATAGTATCCATAATTGACGCAATACAAACAATCTATTA
ATAAATCATCAAGGCAAAATCTGTTAACAAGGAATCTGGATATCATATGA
ATATGCCATTTTATGATTTCAGCTTTTTACAACTGCAACATTATGCCTTT
GACATCATTGATATATATTTCTTTCGATCCCTTTTCATGCAAAAATGGAC
TGTTTCAAAATCCCAGTCCAAAAATTTAACCCTCATTAACAACGTCTGCC
TAAAAGGGAACTTTAAAAAAACCATCCCAGTTCAAAANAAACCATCCCAG
TTCAAAATGTACACACTAATCGCATTATTGTTTTTCTATGGCTATAGCCA
CCTGTTGATTGTGTACAAATCTGAAAACTGTAACAACAGCGGTGGTCAGA
ATTTTGATATCTACTATTATATCAGTTTAAGATTACGTCATTTTACCAAT
TTGAAACATCCTCTTCCAAATTACCCATGGAAAAGGAACCATTGCACCAC
CCCAAAATGGATCTTTCCGAAATGAGTTGAATATTCAGCTACTGACTGTT
CTGATGCAAGTTATCCGGCATGTGGGAAAAACAAGTCTGCGCTATGCCGA
TTTACAATCTGTGTACGTGACTGTTGAAACAAAGCCTCACACAGCAACGG
AAATGATAAAGTATCGAAGTTCCCTACAGCAGTATTGACAACATTTCTAG
TCTAGGATGTTGACCTATTGGCTATATATCCCTGATTTTGATAAACAATA
TTCCAGAATTTTAACTTTTTGCTGGGGTTTTCTTTTTT

Coding sequence (CDS) from alignment at Sc0000070:23612..24699-

>transcript:BL79206_cuf0 ID=transcript:BL79206_cuf0|Name=transcript:BL79206_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=429bp|location=Sequence derived from alignment at Sc0000070:23612..24699- (Branchiostoma lanceolatum)
ATGAATATGCCATTTTATGATTTCAGCTTTTTACAACTGCAACATTATGC
CTTTGACATCATTGATATATATTTCTTTCGATCCCTTTTCATGCAAAAAT
GGACTGTTTCAAAATCCCAGTCCAAAAATTTAACCCTCATTAACAACGTC
TGCCTAAAAGGGAACTTTAAAAAAACCATCCCAGTTCAAAANAAACCATC
CCAGTTCAAAATGTACACACTAATCGCATTATTGTTTTTCTATGGCTATA
GCCACCTGTTGATTGTGTACAAATCTGAAAACTGTAACAACAGCGGTGGT
CAGAATTTTGATATCTACTATTATATCAGTTTAAGATTACGTCATTTTAC
CAATTTGAAACATCCTCTTCCAAATTACCCATGGAAAAGGAACCATTGCA
CCACCCCAAAATGGATCTTTCCGAAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL79206gene:BL79206Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL79206_cuf0-E1BL79206_cuf0-E1-1564476830-262294Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL79206_cuf0transcript:BL79206_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000070genomeSc0000070:23612..24699 -
Properties
Property NameValue
Transcript idBL79206_cuf0
Biotypeprotein_coding