transcript:BL12348_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL12348_evm0
Unique Nametranscript:BL12348_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL12348_evm0

>transcript:BL12348_evm0-protein ID=transcript:BL12348_evm0-protein|Name=transcript:BL12348_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=123bp
MACRICRRILVACFPSVAAVNLGPEELARPPGTHPPQQTLFTTAKRVRAA
VNCEDLVVTSLATSGGADESNKRQILVRSGGPRSGGSTNRDVAPLKALLA
RRQAEAGRRKRAADGDNGPEREK
Run BLAST on NCBI

mRNA from alignment at Sc0000007:5127106..5127745-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL12348_evm0 ID=transcript:BL12348_evm0|Name=transcript:BL12348_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=640bp|location=Sequence derived from alignment at Sc0000007:5127106..5127745- (Branchiostoma lanceolatum)
ATGGCTTGCCGCATCTGTCGCCGTATCCTGGTGGCCTGTTTCCCCTCAGT
GGCCGCCGTTAATCTCGGTCCAGAAGAACTTGCCCGGCCGCCCGGCACAC
ATCCCCCGCAACAAACACTCTTCACAACGGCAAAACGCGTTCGTGCAGCC
GTGAACTGCGAGGACCTGGTCGTGACTTCACTCGCGACCTCCGGCGGCGC
GGACGAATCCAACAAGAGGCAGATACTAGGTGAACTTCCGCTGTACTTAT
ATGGTAGTGAGAATCATGTGATTCAGGATCATCCAATCAGCGCGCAGTGA
AGATAGAGAAAGTATCTTACCAGGACACTTGGTCGGTAATAGGAGTGCCC
ATTCGTCTATGGCCGACCAAATTTTCTGATGAAATGTTTCTCCTATTTTG
GCCGATTTTTTTTACTGTTTTTCAGCTGGCGAAGAGGTCTGGTAGAAACT
AGCCTTCGGGTTGAAATGTACATGTTACCGACATTGTTTGACGTCAGTCC
GTAGTGGAGGGCCCCGTAGTGGAGGGTCCACCAACCGTGACGTGGCGCCC
CTCAAGGCGCTGCTGGCCCGCCGCCAAGCCGAGGCCGGACGTCGTAAGAG
GGCCGCGGATGGGGATAACGGACCGGAACGAGAGAAATGA

Coding sequence (CDS) from alignment at Sc0000007:5127106..5127745-

>transcript:BL12348_evm0 ID=transcript:BL12348_evm0|Name=transcript:BL12348_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=744bp|location=Sequence derived from alignment at Sc0000007:5127106..5127745- (Branchiostoma lanceolatum)
ATGGCTTGCCGCATCTGTCGCCGTATCCTGGTGGCCTGTTTCCCCTCAGT
GGCCGCCGTTAATCTCGGTCCAGAAGAACTTGCCCGGCCGCCCGGCACAC
ATCCCCCGCAACAAACACTCTTCACAACGGCAAAACGCGTTCGTGCAGCC
GTGAACTGCGAGGACCTGGTCGTGACTTCACTCGCGACCTCCGGCGGCGC
GGACGAATCCAACAAGAGGCAGATACTAGTCCGTAGTGGAGGGCCCCGTA
GTGGAGGGTCCACCAACCGTGACGTGGCGCCCCTCAAGGCGCTGCTGGCC
CGCCGCCAAGCCGAGGCCGGACGTCGTAAGAGGGCCGCGGATGGGGATAA
CGGACCGGAACGAGAGAAATGAATGGCTTGCCGCATCTGTCGCCGTATCC
TGGTGGCCTGTTTCCCCTCAGTGGCCGCCGTTAATCTCGGTCCAGAAGAA
CTTGCCCGGCCGCCCGGCACACATCCCCCGCAACAAACACTCTTCACAAC
GGCAAAACGCGTTCGTGCAGCCGTGAACTGCGAGGACCTGGTCGTGACTT
CACTCGCGACCTCCGGCGGCGCGGACGAATCCAACAAGAGGCAGATACTA
GTCCGTAGTGGAGGGCCCCGTAGTGGAGGGTCCACCAACCGTGACGTGGC
GCCCCTCAAGGCGCTGCTGGCCCGCCGCCAAGCCGAGGCCGGACGTCGTA
AGAGGGCCGCGGATGGGGATAACGGACCGGAACGAGAGAAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL12348gene:BL12348Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL12348_evm0-E1BL12348_evm0-E1-1564476830-78162Branchiostoma lanceolatumexon
BL12348_evm0-E2BL12348_evm0-E2-1564476830-78160Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL12348_evm0transcript:BL12348_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000007genomeSc0000007:5127106..5127745 -
Properties
Property NameValue
Transcript idBL12348_evm0
Biotypeprotein_coding