Blg00623.17 (mRNA) - B. lanceolatum

Overview
NameBlg00623.17
Unique NameBlg00623.17
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000301:86586..92466-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00623.17 ID=Blg00623.17|Name=Blg00623.17|organism=Branchiostoma lanceolatum|type=mRNA|length=5881bp|location=Sequence derived from alignment at Sc0000301:86586..92466- (Branchiostoma lanceolatum)
AACACTTCATCACACGCACTCATATCATACCAGTAAAGAAAGTTATACTC GTTTTAAAGTTTGAGAACCTGCCCATCCCGAAATGTTACAATGGAACAGT CCGAACAAGGAAGGTCAAAGTTTAGGCGCTTGCTGACTTGAGCACTGCTG CACAGACTGTTTGTTGTTGTTGCTCCAGCATATCCCAGTTCGTTTAAACA CTTTCAAGTAAACCCCAAGTCTTTGGGACGTGTTGCAAAAGAAGCTCTGG AATTCTGACTACAATTTTATACACGTGGGTTCACCCTTGGAGGAGACAGG AGCTCGAAGGATCCAAAATGGCGGAAGCATCATCAGAAGGAGGAGAAGGA GAGAGTCCATCACTCGATCGAAGCCTGCAGATGAACATGTTCGACTGCAG CATCTGTCTGCAGATGTTCACCCGGCCCAAGGTGCTGCCGTGCGGACACA CGTTCTGTAAGGACTGCCTGGTAACGTACGTTAAAGGCGGCTGGTCCTGC AAATGCCCCACATGCAAAAGACCCGCGTACCTAAACGGAAAGAAAGGCTC AGAGGGAGTGGAGAGTTTAACGGATAACATTTCCTTAGGAAATCTTCGTG ACGACTTCGCAAGTCTCACAATCATCAACAAACAGGGCAGGGAGGTTGAA CGTCATGTACAACTGACTAACCAGCAAGTTTGCGTGAAGCATTACGGCAT GGAAGTCAAGTTCTATTGCCCCAGCTGTGAGGAAGTTATTTGTGGAGAGT GTATTGTTGATGAACACAACACACATGGGGTCACCAGGCTTTCCAAGGCT CTAGAGAAGCAAGCCGAAGAAGCCAAAGAACTCATGGGCGAGGGAAAGAG ATGGATTGAACAAGTGAGAGGAAAGATCACAGAAACAGAAGAAGCAAGAA AGATGTTGAAGTTTGAGGAAGAGACACAATGTTTGTTAGTGAACAAAAGT GCAGCCTGTCTGAAAAAGGTGCTAACAGAATCTGTGGATAAACGTGCAAC CGACATTAAGGAAGAGTTGAACGCTTTGTTTGCGTTGAAGCGTGTAGCTC TAACAAACTGTAAGGAAGAACTGGAAACGTTGCTGGCAACCTTGCTAAAT GGTGTGGAGGAAGTTGACCGGTGTATCGCCTCGGAAGAAACCATTCCTTT GATTAGGGGGAGGAAGGTGTTACAGGAAGTGATCCAACCGTTGCCAGGAA GGACATTGTTGTTGGGGGGCGAACAGGACAGCTCACCATTTTTCGCGCCT AGTCTTTTCGATGTGCCAGCAGTTTCGCTTGGAACTGTGCGCAGTGCCAA GAAGCCTGGCACCAGTCCTCCGAAGATGACTGCATATTCATTTGGGGCTG TCCAAAATGCTAGACCATCTAGTACCAGTCCGCCCAACCTGCTTGCATGT CCACTTAGAACAGTCCAAAATGCTCCAAACTCTAGTAACAGTCCTCTCAA TATGTCTGCACGGCCCCGTAGAACAGTCCAAAGTGACATGTTTTCATCTA GAACAGTTCAGAGTGCAAGGAAGCCTGTTGTCTCCAAGTCTCCGGAGACA ACCAGTGCAGTGGAGGAGTTCATACAGAGTGTACAACGACTTAAAGATGT CCAGGCAATGTCTTACTGTCCTATGTAGCAGTTACTTGGCTGAAATTAGA TGTTCTTTTTTTTCTGAATATTTTGATGCACAACTTTCCTTTATTCAGTT ATTGAAACACTAGTAACAACTAGCAAACCTGGCGATAAAGTTTGAAGAAA AAAAATGTTAGCTGAGAGAGCAGTATGTTATCAGAACACACATGAACATG CACACATGAACATGCACACATGAACATGCACACATATACATACACACATA TACATACACATGTAAACACATGTACAAGCATGCACGCACAAATACAAACA TACAGTATGGCCTCCGTCGGTCAGTATTGACCATGGTAAAATCCTACTTC ACAACAGCCCTACAGCATCGACTATGGCTAAACAGCCCTATACGAGAATG GCAGTATGACAAACATACACACCTATGCAAACATGAACACGTACCTACAG AAACATGCGCACACACACACACACACACTGACAGCAATGCGAACATTTGC ACAAACACACACATACACCTACTAGTATGCAAATGCACGCACACAAACAC CTGCAAATGCACACACACATACAGATGCACACACATGTACATGTACATGC ACACATGCGCAAACACACACACCTACTCAAACACTGCCTGCAAAGCTGGT GTGGGGGTTATGCAGATACATATACAGAAGAGCTACATGTATAACTACTT AATAATCATCTATCACTATAGTATTAGTTTGATTTTTCAATACTCTTTGT TCCTGTTTATATACATACTCTTGTTGGTGTAGTCTTCTTCTGACACTAAT AGCTGACTGTCTAAAATGATATCTTACTATTTTGTATTATTCATGTGTTC ACTTTATGTGATTTTGCAGGTCCTGTTACAGGAACGAGCTACTTCTGATG AGGTGCCATCGCCACCATCATGGATGCCAAACCACCCTTCAGCTATAAGG ACACACACACCACAACCACTGGCACAGCCAAAGCCAGCACGGAAGGAAAG GACAGAACAGCAACAGCCAGCTGTCTTCAGGGCACGGCAGGTAATATTAA GGTCAATGTCTCCAGTTTGGAGCTTAGAACCCTACACTTATTGTCTGCAT CTGTATTGCAAAGTTGGTATGATCACCCTTAAGGCAAGTTCAGTGAAGCA CACCAACTTCATGTAATACATGTAGGCATGATCATTGGCCTGCTGTGTTG GACTTCTAAGGGGAAACTTGGTGCTGCATTGTCTATGCAAAGACTACCTT TTCTGGAACTGTACACAGTTTCTTTGTGTGTGTGGGGGGGGGGGGGCAAG CAATGCAACAATATACAGTACTATCTCCTTTATGTAATCTCAAAAAGGAT GTCTCTGCACAGATATTGTACATCTTTGAGACATGTCTATGTTTTTGAGT AACAAGCTTTACAATTGGCCTTTTGTACAATGGTCAATTTTTCCTGCAAA AAATGTTCAAGAGCAGGCCTTTGATTTACACTATATGTTGTTGTATTCGA CCATCCTTTCATGTGGTTGTCCTAGGAATTGTCTACACTGTTTAATTTAC ACTAACGTATCATGACCTATTTACGTGCAGAACCTATTTACGTCCGGTTT GGCTCATGTCCACATGTCGCGGTGTATTATGCCAAAGCCTGTTCTCANTA ACGTAACATGACCTATTTACGTGCAGAACCTATTTACGTCCGGTTTGGCT CATGTCCACATGTCGCGGTGTATTATGCCAAAGCCTGTTCTCATGAGCAA TAAAGAACATCATAAGTATGATCCTTAGCCATCTCTTTAATTTTTGCACA GCAAAACATAATGGCCATGCGTTTACCACGTGAACGCCACGTGCCGCGCA TGTGGGGGAAATTTACAGATAAACATTGTTTTTTTCCATCGCGTTAAGCA AGTGGCCGGACAGACATAGTGATTTTACTATCATTTGTCTGCAGACTACT TTGGACAGTCACTGTGCATTTTTTTCTGGTCAATGTTCTTCAAGCATAGC GCTAGAAGGGAAAAGATTCAGAAGTGGACGATAATGGGTTACCCTAGCAC AATTCTTCATCATATACCTCAGTATAAATACATGCTCGCACGGCATTAAA CAGGCGGAGAAAAACTTACAGACCATGCATTTTCTTTTTAGAAGAGCTGA TATTTCTGCCCATGGGTTTGAAATTTGGCTCTGTCCGCGCGGTTTTAAGA TAAATACGTTTTGAATAAATTGGACGTTAACTGGTCACCTTACGTTATAT GTTGTTGTATTTGACCATCCTTTCATGTGGTTGTCCTAGGAATTGTCTAC ACTGTTGCAGGGGCAAGGGCCGCGCCGTCAGCTACATGTTAAGAGAGGTA CCAAGAAGGTCGTCAAGCCCAAGGACGCCGTCGCAAAGAGCCTCATTTCC GAGGTTCCTCGTAGGGGTAACGGAAATGGAGGCAGTGAACCCATCCCACC CAACTCAGACAGTTCTGATGCCAGCAACTCCCAGGTTGGTACTCACTTAT TTTCACCTCAGTGCATGGAGGCTTTGTTTTCGGGGTGTCAGTTTGATACG TTGATGAAGGTTAGACATCCAGGTAGTAAGATACACCAAAAATAGTTACT GGATAAAATTTCGAAACAGTCAGACTCTTCAGACAGCATCCGCTATCTTT CGTCAGTGACTAATATATCTTTGTCTGTTTGTTTGTTAGTTTGTGTGTCC GTAGTTACAAATGGCAGGAACATGGTGTCACCACAGACTGACGGGAAGTG AAGGTCAAAATTGGAAGTCAAAATACCCCCCCCCCCCTGATAAGGTTTGC TTGCAACTTTTGAACACATGTCAACATGATGCTGAAGGAGATCATGTATA ACCAACCCCCACCCACCCCTGTGACACAAGCAGCTTGGTGGTTTGCAAAA CTATGAAGTTGTCTACTGATGTGTTACTTAAATTTTAAAGAAGGTCTAGG ACATGCACTGCAAAGAAACTGTTAAATGCCAATTTAAAGCATCAAAATTG GTATCACAGCCAACAAGTCTTTTATTCCTATGTTCTAGAAAGCGACACTA GTGTGGTAGCCTATTATCACTGCAACTACATTTGTACACTTAAGGCTGCC ACACTGGTGTCACTTCTACAACTGCTGAATTAGTTTCACTTCTACAACTA CATTCCTGGCTACTACACAAGATATTTTCCCATATTTCTGAACATAGCCG AAGGAGAACAAAATTTTTTATTTTTTTAAGCCAGCCGAAAATTAATGCGT GTAAGATATCATTGATAGATTGTACTTGCTGTGGCCTAACCTGTGCTTTT TTATCTTTTATGTTTAGACCGATGCAATGCCTATCGTTGCTGAGAGTTCT GTTCAGGACTCAAGCGCCAGTGCTAAAGTGTCTGCTTCTTCTGAGGGTGC TGCAGCTACGTTCAAATTCGATGATGCCAATGGAAACAGTAGTGATTTGG ATATCTAGCCTTCGTTCCCTGATGTCTTAACCTGTCAGTTGTCAGACTCT TTGCTAGATAACACTAAGAACTAATTAGGTAATTAAGGGTCCTTCTCCTC ATGCATACTTAGTTCAAATTGTGAACTGCCTTATAAGCTTATTATGGTGC CATGCATTGATCCAAATATGAGTGTGATACTTTTCTACATACTTGGTCCC TTGATCATTTGTTGCTTCTCTTTACAATATACAAGTAATATACAAGAGAT TATACTTATAAATACTATATATGACATTTACCTGCCATATTACATATATC TGCCACTTTGAAAACCAGTTGGTTAAGATCTCTAATGCAGCACCCCCCCT CAAAGTATGCACAGTTTAGATATACAGGACTTAATTATTCTCAGGGACCT TGCATTGGAGATCACTTTAGACAGTTTTCCAGTTGCTGGGTGTATGTGAG CTTGTGAAATCATATATGTTAGTACACATTTACAGTGAAATAACAAATCT GGACACTGTTCAAGAGTTCTATGATTTATGAAGTCGTTGGATATTTGATG TTTTACACATTATATAGCAATCATCATCAGAAGATCATAATTAGTCATGT TCATGTTATTCCACACAAATTAAAATTCTATTCTTGTTACATGTCTTGAT CATGATGTATCTGTTTGCGTTTATGTGGTATATGAAATTGAAGAAACAAG ATTTCCTATGTGTGATATATAGCTATGTTCAGGCGTGAGTATGCTACAAA GGGCATTTTTTTATGTCCTTGATGACACTAGCTACTGCATGGTGTGAAAA CAAGCCAAAATGTTGGTAACAGCATAGTTAA

Coding sequence (CDS) from alignment at Sc0000301:86586..92466-

>Blg00623.17 ID=Blg00623.17|Name=Blg00623.17|organism=Branchiostoma lanceolatum|type=CDS|length=1749bp|location=Sequence derived from alignment at Sc0000301:86586..92466- (Branchiostoma lanceolatum)
ATGGCGGAAGCATCATCAGAAGGAGGAGAAGGAGAGAGTCCATCACTCGA
TCGAAGCCTGCAGATGAACATGTTCGACTGCAGCATCTGTCTGCAGATGT
TCACCCGGCCCAAGGTGCTGCCGTGCGGACACACGTTCTGTAAGGACTGC
CTGGTAACGTACGTTAAAGGCGGCTGGTCCTGCAAATGCCCCACATGCAA
AAGACCCGCGTACCTAAACGGAAAGAAAGGCTCAGAGGGAGTGGAGAGTT
TAACGGATAACATTTCCTTAGGAAATCTTCGTGACGACTTCGCAAGTCTC
ACAATCATCAACAAACAGGGCAGGGAGGTTGAACGTCATGTACAACTGAC
TAACCAGCAAGTTTGCGTGAAGCATTACGGCATGGAAGTCAAGTTCTATT
GCCCCAGCTGTGAGGAAGTTATTTGTGGAGAGTGTATTGTTGATGAACAC
AACACACATGGGGTCACCAGGCTTTCCAAGGCTCTAGAGAAGCAAGCCGA
AGAAGCCAAAGAACTCATGGGCGAGGGAAAGAGATGGATTGAACAAGTGA
GAGGAAAGATCACAGAAACAGAAGAAGCAAGAAAGATGTTGAAGTTTGAG
GAAGAGACACAATGTTTGTTAGTGAACAAAAGTGCAGCCTGTCTGAAAAA
GGTGCTAACAGAATCTGTGGATAAACGTGCAACCGACATTAAGGAAGAGT
TGAACGCTTTGTTTGCGTTGAAGCGTGTAGCTCTAACAAACTGTAAGGAA
GAACTGGAAACGTTGCTGGCAACCTTGCTAAATGGTGTGGAGGAAGTTGA
CCGGTGTATCGCCTCGGAAGAAACCATTCCTTTGATTAGGGGGAGGAAGG
TGTTACAGGAAGTGATCCAACCGTTGCCAGGAAGGACATTGTTGTTGGGG
GGCGAACAGGACAGCTCACCATTTTTCGCGCCTAGTCTTTTCGATGTGCC
AGCAGTTTCGCTTGGAACTGTGCGCAGTGCCAAGAAGCCTGGCACCAGTC
CTCCGAAGATGACTGCATATTCATTTGGGGCTGTCCAAAATGCTAGACCA
TCTAGTACCAGTCCGCCCAACCTGCTTGCATGTCCACTTAGAACAGTCCA
AAATGCTCCAAACTCTAGTAACAGTCCTCTCAATATGTCTGCACGGCCCC
GTAGAACAGTCCAAAGTGACATGTTTTCATCTAGAACAGTTCAGAGTGCA
AGGAAGCCTGTTGTCTCCAAGTCTCCGGAGACAACCAGTGCAGTGGAGGA
GTTCATACAGAGTGTCCTGTTACAGGAACGAGCTACTTCTGATGAGGTGC
CATCGCCACCATCATGGATGCCAAACCACCCTTCAGCTATAAGGACACAC
ACACCACAACCACTGGCACAGCCAAAGCCAGCACGGAAGGAAAGGACAGA
ACAGCAACAGCCAGCTGTCTTCAGGGCACGGCAGGGGCAAGGGCCGCGCC
GTCAGCTACATGTTAAGAGAGGTACCAAGAAGGTCGTCAAGCCCAAGGAC
GCCGTCGCAAAGAGCCTCATTTCCGAGGTTCCTCGTAGGGGTAACGGAAA
TGGAGGCAGTGAACCCATCCCACCCAACTCAGACAGTTCTGATGCCAGCA
ACTCCCAGACCGATGCAATGCCTATCGTTGCTGAGAGTTCTGTTCAGGAC
TCAAGCGCCAGTGCTAAAGTGTCTGCTTCTTCTGAGGGTGCTGCAGCTAC
GTTCAAATTCGATGATGCCAATGGAAACAGTAGTGATTTGGATATCTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00623.17Blg00623.17-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00623.17-exon-Sc0000301-1570713199:90887..92466Blg00623.17-exon-Sc0000301-1570713199:90887..92466Branchiostoma lanceolatumexon
Blg00623.17-exon-Sc0000301-1570713199:89827..89997Blg00623.17-exon-Sc0000301-1570713199:89827..89997Branchiostoma lanceolatumexon
Blg00623.17-exon-Sc0000301-1570713199:88383..88556Blg00623.17-exon-Sc0000301-1570713199:88383..88556Branchiostoma lanceolatumexon
Blg00623.17-exon-Sc0000301-1570713199:86586..87549Blg00623.17-exon-Sc0000301-1570713199:86586..87549Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000301genomeSc0000301:86586..92466 -
Properties
Property NameValue
GeneIDBlg00623